BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130807.9 + phase: 0 /pseudo
(311 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 82 2e-15
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 70 7e-12
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 70 9e-12
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 69 1e-11
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 68 3e-11
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 67 6e-11
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 67 7e-11
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 64 5e-10
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 62 2e-09
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 60 9e-09
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 59 2e-08
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 58 3e-08
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 57 8e-08
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 57 8e-08
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 57 8e-08
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 53 1e-06
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 51 4e-06
PK11_HUMAN (P87893) HERV-K_22q11.21 provirus ancestral Pol prote... 50 9e-06
POK9_HUMAN (P63134) HERV-K_5q13.3 provirus ancestral Pol protein... 49 1e-05
POK5_HUMAN (P63132) HERV-K_19p13.11 provirus ancestral Pol prote... 49 2e-05
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 81.6 bits (200), Expect = 2e-15
Identities = 40/108 (37%), Positives = 62/108 (57%)
Query: 201 VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKPVSMAPYRMSASELAELKKRLEDLLEN 260
V+ F +V ++ E I+L +P+ P + + E++K ++ +L
Sbjct: 909 VIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQ 968
Query: 261 KFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQLNKVTIKNRYPLPRID 308
K +R S SPW +PV LV KKDGS+R+CIDYR++NKV N +PLP I+
Sbjct: 969 KVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIE 1016
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 70.1 bits (170), Expect = 7e-12
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 20/128 (15%)
Query: 204 DFPEVLPDEIPDMPPKREVEFSIDLVPRT--------------KPVSMAPYRMSASELAE 249
+FPE+ ++ ++ + F+++ P T +PV YR S++ E
Sbjct: 270 NFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVEE 329
Query: 250 LKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDG------SMRLCIDYRQLNKVTIKNRYP 303
++ +++ L+++K V PSVS + +P+ LV KK RL IDYRQ+NK + +++P
Sbjct: 330 IQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFP 389
Query: 304 LPRIDDLM 311
LPRIDD++
Sbjct: 390 LPRIDDIL 397
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 69.7 bits (169), Expect = 9e-12
Identities = 79/311 (25%), Positives = 136/311 (43%), Gaps = 54/311 (17%)
Query: 46 IRGTCYINNTPLVAI---IDTGATHCFIAFDCVSALGLDLSDMNGE--MVVETPTKGSVT 100
I+G Y + + +DTGA+ C + + + +N E ++V+ S+T
Sbjct: 26 IKGRLYFKGYKKIELHCFVDTGASLCIASKFVIP----EEHWVNAERPIMVKIADGSSIT 81
Query: 101 TSLVCLRCPLSMFGHDFEMDLVCLHLSGMDVILGMNWLEYNH------------------ 142
S VC L + G F++ V SG+D I+G N+ +
Sbjct: 82 ISKVCKDIDLIIAGEIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFTDRVIFTKNKSYP 141
Query: 143 -----------VHINCFSKSVCFSSAEEESGA*FLSTKQLKQ-MERDGILMFSLMAS--- 187
V I F +S+ S ++ +ST +++ +E IL S
Sbjct: 142 VHITKLTRAVRVGIEGFLESMKKRSKTQQPEPVNISTNKIENPLEEIAILSEGRRLSEEK 201
Query: 188 LSIENQAMI---DKL*VVCDFPEVLPDEIPDMPPKREVEFSIDLVPRTKPVSMAPYRMSA 244
L I Q M + L VC + P++ K+ ++ SI L +K + + P + S
Sbjct: 202 LFITQQRMQKIEELLEKVCSENPLDPNKT-----KQWMKASIKLSDPSKAIKVKPMKYSP 256
Query: 245 SELAELKKRLEDLLENKFVRPSVSPWGAPVFLV----MKKDGSMRLCIDYRQLNKVTIKN 300
+ E K++++LL+ K ++PS SP AP FLV K+ G R+ ++Y+ +NK TI +
Sbjct: 257 MDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGD 316
Query: 301 RYPLPRIDDLM 311
Y LP D+L+
Sbjct: 317 AYNLPNKDELL 327
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 69.3 bits (168), Expect = 1e-11
Identities = 80/325 (24%), Positives = 143/325 (43%), Gaps = 55/325 (16%)
Query: 37 TQTENEDRL---------IRGTCYINNTPLVAI---IDTGATHCFIAFDCVSALGLDLSD 84
TQT+ E + I+G Y + + +DTGA+ C + + +
Sbjct: 8 TQTQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIP----EEHW 63
Query: 85 MNGE--MVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDLVCLHLSGMDVILGMNWLEYNH 142
+N E ++V+ S+T S VC L + G F + V SG+D I+G N+ +
Sbjct: 64 VNAERPIMVKIADGSSITISKVCKDIDLIIAGEIFRIPTVYQQESGIDFIIGNNFCQLYE 123
Query: 143 VHINCFSKSVCFSS-------------AEEESGA*FLST--KQLKQMERDGILMFSLMAS 187
I F+ V F+ A FL + K+ K + + + + +
Sbjct: 124 PFIQ-FTDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIE 182
Query: 188 LSIENQAMI--------DKL*V-------VCDFPEVLPDEIPDMPPKRE--VEFSIDLVP 230
+E A++ +KL + + + E + E P P K + ++ SI L
Sbjct: 183 NPLEEIAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSD 242
Query: 231 RTKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLV----MKKDGSMRL 286
+K + + P + S + E K++++LL+ K ++PS SP AP FLV K+ G R+
Sbjct: 243 PSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRM 302
Query: 287 CIDYRQLNKVTIKNRYPLPRIDDLM 311
++Y+ +NK T+ + Y LP D+L+
Sbjct: 303 VVNYKAMNKATVGDAYNLPNKDELL 327
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 68.2 bits (165), Expect = 3e-11
Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 39/300 (13%)
Query: 46 IRGTCYINNTPLVAI---IDTGATHCFIAFDCVSALGLDLSDMNGE--MVVETPTKGSVT 100
I+G Y + + +DTGA+ C + + + +N E ++V+ S+T
Sbjct: 28 IKGRLYFKGYKKIELHCFVDTGASLCIASKFVIP----EEHWINAERPIMVKIADGSSIT 83
Query: 101 TSLVCLRCPLSMFGHDFEMDLVCLHLSGMDVILGMNWLEYNHVHINCFSKSVCFSS---- 156
+ VC L + G F + V SG+D I+G N+ + I F+ V F+
Sbjct: 84 INKVCRDIDLIIAGEIFHIPTVYQQESGIDFIIGNNFCQLYEPFIQ-FTDRVIFTKDRTY 142
Query: 157 ---------AEEESGA*FLST--KQLKQMERDGI-LMFSLMASLSIENQAMIDKL*V--- 201
A FL + K+ K + + + + + +A LS + +KL +
Sbjct: 143 PVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGRRLSEEKLFITQQ 202
Query: 202 ----VCDFPEVLPDEIPDMPPKRE--VEFSIDLVPRTKPVSMAPYRMSASELAELKKRLE 255
+ + E + E P P K + ++ SI L +K + + P + S + E K+++
Sbjct: 203 RMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIK 262
Query: 256 DLLENKFVRPSVSPWGAPVFLV----MKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLM 311
+LL+ K ++PS SP AP FLV K+ G R+ ++Y+ +NK T+ + Y P D+L+
Sbjct: 263 ELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELL 322
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 67.0 bits (162), Expect = 6e-11
Identities = 80/325 (24%), Positives = 143/325 (43%), Gaps = 55/325 (16%)
Query: 37 TQTENEDRL---------IRGTCYINNTPLVAI---IDTGATHCFIAFDCVSALGLDLSD 84
TQT+ E + I+G Y + + +DTGA+ C + + +
Sbjct: 8 TQTQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIP----EEHW 63
Query: 85 MNGE--MVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDLVCLHLSGMDVILGMNWLEYNH 142
+N E ++V+ S+T S VC L + F++ V SG+D I+G N+ +
Sbjct: 64 VNAERPIMVKIADGSSITISKVCKDIDLIIAREIFKIPTVYQQESGIDFIIGNNFCQLYE 123
Query: 143 ------------------VHI-----------NCFSKSVCFSSAEEESGA*FLSTKQLKQ 173
VHI F +S+ S ++ +ST +++
Sbjct: 124 PFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIEN 183
Query: 174 MERDGILMFSLMASLSIENQAMID-KL*VVCDFPEVLPDEIPDMPPKRE--VEFSIDLVP 230
++ I + S LS E + ++ + + E + E P P K + ++ SI L
Sbjct: 184 PLKE-IAILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSD 242
Query: 231 RTKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLV----MKKDGSMRL 286
+K + + P + S + E K++++LL+ K ++PS SP AP FLV K+ G R+
Sbjct: 243 PSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRM 302
Query: 287 CIDYRQLNKVTIKNRYPLPRIDDLM 311
++Y+ +NK TI + Y LP D+L+
Sbjct: 303 VVNYKAMNKATIGDAYNLPNKDELL 327
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 66.6 bits (161), Expect = 7e-11
Identities = 82/329 (24%), Positives = 143/329 (42%), Gaps = 63/329 (19%)
Query: 37 TQTENEDRL---------IRGTCYINNTPLVAI---IDTGATHCFIAFDCVSALGLDLSD 84
TQT+ E + I+G Y + + +DTGA+ C + + +
Sbjct: 9 TQTQTEQVMNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIP----EEHW 64
Query: 85 MNGE--MVVETPTKGSVTTSLVCLRCPLSMFGHDFEMDLVCLHLSGMDVILGMNWLEYNH 142
+N E ++V+ S+T S VC L + G F++ V SG+D I+G N+ +
Sbjct: 65 VNAERPIMVKIADGSSITISKVCKDIDLIIVGVIFKIPTVYQQESGIDFIIGNNFCQLYE 124
Query: 143 ------------------VHI-----------NCFSKSVCFSSAEEESGA*FLSTKQLKQ 173
VHI F +S+ S ++ +ST +++
Sbjct: 125 PFIQFTDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIEN 184
Query: 174 -MERDGILMFSLMAS---LSIENQAMI---DKL*VVCDFPEVLPDEIPDMPPKREVEFSI 226
+E IL S L I Q M + L VC + P++ K+ ++ SI
Sbjct: 185 PLEEIAILSEGRRLSEEKLFITQQRMQKTEELLEKVCSENPLDPNKT-----KQWMKASI 239
Query: 227 DLVPRTKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKK----DG 282
L +K + + P + S + E K++++LL+ K ++PS SP AP FLV + G
Sbjct: 240 KLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRG 299
Query: 283 SMRLCIDYRQLNKVTIKNRYPLPRIDDLM 311
+ R+ ++Y+ +NK T+ + Y LP D+L+
Sbjct: 300 NKRMVVNYKAMNKATVGDAYNLPNKDELL 328
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 659
Score = 63.9 bits (154), Expect = 5e-10
Identities = 67/296 (22%), Positives = 131/296 (43%), Gaps = 44/296 (14%)
Query: 51 YINNTPLVAIIDTGATHCFIAFDCV-------SALGLDLSDMNGEMVVETPTKGSVTTSL 103
Y N L +DTG++ C + + + L++ NG+++ T
Sbjct: 23 YQTNLDLHCYVDTGSSLCMASKYVIPEEYWQTAEKPLNIKIANGKIIQLTK--------- 73
Query: 104 VCLRCPLSMFGHDFEMDLVCLHLSGMDVILGMNWLEY--------NHVHINCFSKSVCF- 154
VC + P+ + G F + + SG+D++LG N+ + + ++ + +SV
Sbjct: 74 VCSKLPIRLGGERFLIPTLFQQESGIDLLLGNNFCQLYSPFIQYTDRIYFHLNKQSVIIG 133
Query: 155 --SSAEEESGA*FL-STKQLKQMERDGILMFSLMASLSIEN----------QAMIDKL*V 201
+ A + FL S K+ ++ R + + L +E + I K
Sbjct: 134 KITKAYQYGVKGFLESMKKKSKVNRPEPINITSNQHLFLEEGGNHVDEMLYEIQISKFSA 193
Query: 202 VCDFPEVLPDEIPDMPPKRE--VEFSIDLVPRTKPVSMAPYRMSASELAELKKRLEDLLE 259
+ + E + E P P K + + +I+L+ V + P S S+ E +++++LLE
Sbjct: 194 IEEMLERVSSENPIDPEKSKQWMTATIELIDPKTVVKVKPMSYSPSDREEFDRQIKELLE 253
Query: 260 NKFVRPSVSPWGAPVFLV----MKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLM 311
K ++PS S +P FLV ++ G R+ ++Y+ +NK T + + LP D+L+
Sbjct: 254 LKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELL 309
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 62.0 bits (149), Expect = 2e-09
Identities = 68/274 (24%), Positives = 121/274 (43%), Gaps = 29/274 (10%)
Query: 52 INNTPLVAIIDTGATHCFIAFDCVSALGLDLSDMNGEMVVETPTKGSVTTSLVCLRCPLS 111
I +A IDTGAT CF + ++ E+++ +K + ++ + L
Sbjct: 26 IGKRNFLAYIDTGATLCFGKRKISN--NWEILKQPKEIIIADKSKHYIREAISNVF--LK 81
Query: 112 MFGHDFEMDLVCLHLSGMDVILGMNWLEYNHVHINCFSK-SVCFSSAEEESGA*FLSTKQ 170
+ +F + ++ LH SG+D+I+G N+L+ I + + + + +STK
Sbjct: 82 IENKEFLIPIIYLHDSGLDLIIGNNFLKLYQPFIQRLETIELRWKNLNNPKESQMISTKI 141
Query: 171 LKQMERDGILMFSLMASLSIEN-QAMIDKL*VVCDFPEVLPDEIPDMP-----PKREVEF 224
L + E + LS E ++K E L + + P K +
Sbjct: 142 LTKNE---------VLKLSFEKIHICLEKYLFFKTIEEQLEEVCSEHPLDETKNKNGLLI 192
Query: 225 SIDLVPRTKPVSMA---PYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMK-- 279
I L + +++ PY + ++ E K+ EDLL+ +R S SP AP F V
Sbjct: 193 EIRLKDPLQEINVTNRIPYTIR--DVQEFKEECEDLLKKGLIRESQSPHSAPAFYVENHN 250
Query: 280 --KDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLM 311
K G R+ I+Y+++N+ TI + Y LPR D ++
Sbjct: 251 EIKRGKRRMVINYKKMNEATIGDSYKLPRKDFIL 284
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 59.7 bits (143), Expect = 9e-09
Identities = 26/83 (31%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 234 PVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSM-----RLCI 288
P+ Y ++ + E++ +++++L +R S SP+ +P ++V KK + R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265
Query: 289 DYRQLNKVTIKNRYPLPRIDDLM 311
DYR+LN++TI +RYP+P +D+++
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEIL 288
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 58.9 bits (141), Expect = 2e-08
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 12/113 (10%)
Query: 204 DFPEVLPDEIPDMPPKREVEFSIDLVPRTK---PVSMAPYRMSASELAELKKRLEDLLEN 260
+FP + + M VE ++ RT P+ Y + E+++++++LL++
Sbjct: 94 EFPRIFEPPLSGM----SVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQD 149
Query: 261 KFVRPSVSPWGAPVFLVMKK-----DGSMRLCIDYRQLNKVTIKNRYPLPRID 308
+RPS SP+ +P+++V KK + R+ +D+++LN VTI + YP+P I+
Sbjct: 150 GIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDIN 202
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 57.8 bits (138), Expect = 3e-08
Identities = 23/68 (33%), Positives = 48/68 (69%), Gaps = 5/68 (7%)
Query: 249 ELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGS-----MRLCIDYRQLNKVTIKNRYP 303
E++ +++D+L +R S SP+ +P+++V KK + R+ IDYR+LN++T+ +R+P
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHP 281
Query: 304 LPRIDDLM 311
+P +D+++
Sbjct: 282 IPNMDEIL 289
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 56.6 bits (135), Expect = 8e-08
Identities = 27/94 (28%), Positives = 50/94 (52%)
Query: 218 PKREVEFSIDLVPRTKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLV 277
P + +EF ++L + + Y + ++ + + L++ +R S + PV V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 278 MKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLM 311
KK+G++R+ +DY+ LNK N YPLP I+ L+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLL 489
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 56.6 bits (135), Expect = 8e-08
Identities = 27/94 (28%), Positives = 50/94 (52%)
Query: 218 PKREVEFSIDLVPRTKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLV 277
P + +EF ++L + + Y + ++ + + L++ +R S + PV V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 278 MKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLM 311
KK+G++R+ +DY+ LNK N YPLP I+ L+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLL 489
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 56.6 bits (135), Expect = 8e-08
Identities = 27/94 (28%), Positives = 50/94 (52%)
Query: 218 PKREVEFSIDLVPRTKPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLV 277
P + +EF ++L + + Y + ++ + + L++ +R S + PV V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 278 MKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLM 311
KK+G++R+ +DY+ LNK N YPLP I+ L+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLL 489
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 52.8 bits (125), Expect = 1e-06
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 283 SMRLCIDYRQLNKVTIKNRYPLPRIDDL 310
S+R+CIDYR L KVTIKN+YP+PR+DDL
Sbjct: 5 SLRMCIDYRALTKVTIKNKYPIPRVDDL 32
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 50.8 bits (120), Expect = 4e-06
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 8/75 (10%)
Query: 239 PYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKK------DGSMRLCIDYRQ 292
P M S+ + ++ LL++ +RPS SP+ +P ++V KK + + RL ID+R+
Sbjct: 188 PTLMGVSDF--VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRK 245
Query: 293 LNKVTIKNRYPLPRI 307
LN+ TI +RYP+P I
Sbjct: 246 LNEKTIPDRYPMPSI 260
>PK11_HUMAN (P87893) HERV-K_22q11.21 provirus ancestral Pol protein
(HERV-K101 Pol protein) [Includes: Reverse transcriptase
(RT) (EC 2.7.7.49)]
Length = 254
Score = 49.7 bits (117), Expect = 9e-06
Identities = 23/64 (35%), Positives = 35/64 (53%)
Query: 233 KPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQ 292
KPV + +++ +L L + LE + PS SPW +PVF++ KK G R+ D R
Sbjct: 32 KPVWVNQWQLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRA 91
Query: 293 LNKV 296
+N V
Sbjct: 92 VNAV 95
>POK9_HUMAN (P63134) HERV-K_5q13.3 provirus ancestral Pol protein
(HERV-K104 Pol protein) [Includes: Reverse transcriptase
(RT) (EC 2.7.7.49)]
Length = 483
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 233 KPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQ 292
KPV + + + +L L + LE + PS SPW +PVF++ KK G R+ D R
Sbjct: 32 KPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRA 91
Query: 293 LNKV-----TIKNRYPLP 305
+N + +++R P P
Sbjct: 92 VNAIIQPMGPLQSRLPSP 109
>POK5_HUMAN (P63132) HERV-K_19p13.11 provirus ancestral Pol protein
(HERV-K113 Pol protein) [Includes: Reverse transcriptase
(RT) (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4) (RNase
H); Integrase (IN)]
Length = 956
Score = 48.5 bits (114), Expect = 2e-05
Identities = 23/64 (35%), Positives = 34/64 (52%)
Query: 233 KPVSMAPYRMSASELAELKKRLEDLLENKFVRPSVSPWGAPVFLVMKKDGSMRLCIDYRQ 292
KPV + + + +L L + LE + PS SPW +PVF++ KK G R+ D R
Sbjct: 32 KPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRA 91
Query: 293 LNKV 296
+N V
Sbjct: 92 VNAV 95
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.326 0.140 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,737,304
Number of Sequences: 164201
Number of extensions: 1517219
Number of successful extensions: 4674
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 4415
Number of HSP's gapped (non-prelim): 284
length of query: 311
length of database: 59,974,054
effective HSP length: 110
effective length of query: 201
effective length of database: 41,911,944
effective search space: 8424300744
effective search space used: 8424300744
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)
Medicago: description of AC130807.9