BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC130807.4 - phase: 0
(329 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 149 1e-35
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 149 1e-35
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 149 1e-35
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 67 6e-11
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 63 9e-10
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 63 1e-09
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 62 2e-09
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 58 4e-08
POL_SMSAV (P03359) Pol polyprotein [Contains: Reverse transcript... 57 5e-08
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 57 6e-08
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 56 1e-07
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 53 9e-07
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 2e-06
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 2e-06
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 2e-06
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 3e-06
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 3e-06
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 52 3e-06
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 5e-06
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 51 5e-06
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 149 bits (375), Expect = 1e-35
Identities = 90/275 (32%), Positives = 143/275 (51%), Gaps = 8/275 (2%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ +LP ++ G+++++VVVDR K A +P Q A ++ ++ G P I
Sbjct: 989 MDFITALPESS-GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1047
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
++D D FTS+ WK ++ S Y PQTDGQ++RT Q++E LLR W
Sbjct: 1048 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1107
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
H+ L++ +YNN+ HS+ M PF+ ++ R L E + ET + +
Sbjct: 1108 VDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQVFQ 1165
Query: 181 MIRKKMKASQSRQKSYHD-KRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPY 239
+++ + + + K Y D K ++ EFQ GD V ++ T TG H KS KL P F GP+
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT-KTGFLH--KSNKLAPSFAGPF 1222
Query: 240 QISERVGTVAYRVGLPPHLSNL-HDVFHVSQLRKY 273
+ ++ G Y + LP + ++ FHVS L KY
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 149 bits (375), Expect = 1e-35
Identities = 90/275 (32%), Positives = 143/275 (51%), Gaps = 8/275 (2%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ +LP ++ G+++++VVVDR K A +P Q A ++ ++ G P I
Sbjct: 989 MDFITALPESS-GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1047
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
++D D FTS+ WK ++ S Y PQTDGQ++RT Q++E LLR W
Sbjct: 1048 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1107
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
H+ L++ +YNN+ HS+ M PF+ ++ R L E + ET + +
Sbjct: 1108 VDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQVFQ 1165
Query: 181 MIRKKMKASQSRQKSYHD-KRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPY 239
+++ + + + K Y D K ++ EFQ GD V ++ T TG H KS KL P F GP+
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT-KTGFLH--KSNKLAPSFAGPF 1222
Query: 240 QISERVGTVAYRVGLPPHLSNL-HDVFHVSQLRKY 273
+ ++ G Y + LP + ++ FHVS L KY
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 149 bits (375), Expect = 1e-35
Identities = 90/275 (32%), Positives = 143/275 (51%), Gaps = 8/275 (2%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
MDF+ +LP ++ G+++++VVVDR K A +P Q A ++ ++ G P I
Sbjct: 989 MDFITALPESS-GYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1047
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
++D D FTS+ WK ++ S Y PQTDGQ++RT Q++E LLR W
Sbjct: 1048 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1107
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVK 180
H+ L++ +YNN+ HS+ M PF+ ++ R L E + ET + +
Sbjct: 1108 VDHISLVQQSYNNAIHSATQMTPFEIVH--RYSPALSPLELPSFSDKTDENSQETIQVFQ 1165
Query: 181 MIRKKMKASQSRQKSYHD-KRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPKFIGPY 239
+++ + + + K Y D K ++ EFQ GD V ++ T TG H KS KL P F GP+
Sbjct: 1166 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT-KTGFLH--KSNKLAPSFAGPF 1222
Query: 240 QISERVGTVAYRVGLPPHLSNL-HDVFHVSQLRKY 273
+ ++ G Y + LP + ++ FHVS L KY
Sbjct: 1223 YVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 67.0 bits (162), Expect = 6e-11
Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 17/252 (6%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
+D + LP + G++ ++ L K IPI K +A+ + + +G +
Sbjct: 970 VDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANK-SAKTVAKAIFESFILKYGPMKTF 1028
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
++D + + L L K S+A+H QT G +R+ ++L +R + + W
Sbjct: 1029 ITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDW 1088
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCW--FESGESVVLGPDLVHETTEK 178
D L + +N + P++ ++GR P + S E + D E+ +
Sbjct: 1089 DVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESKYR 1148
Query: 179 VKM----IRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVGHALKSRKLTPK 234
+++ RK ++A + + K +D + K +E + GD V LR VGH KL K
Sbjct: 1149 LEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLR----NEVGH-----KLDFK 1199
Query: 235 FIGPYQISERVG 246
+ GPY+I E +G
Sbjct: 1200 YTGPYKI-ESIG 1210
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 63.2 bits (152), Expect = 9e-10
Identities = 43/155 (27%), Positives = 70/155 (44%), Gaps = 4/155 (2%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
+D++ LP + G+ + VVVD + P A + + N++ VP I
Sbjct: 891 IDYIGPLP-PSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKAL---NMLTSIAVPKVI 946
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
SD+ FTS + G +L S+ YHPQ+ G+ +R ++ LL ++ W
Sbjct: 947 HSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKW 1006
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTP 155
LP+++ NNSY S P + L+G TP
Sbjct: 1007 YDLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTP 1041
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 62.8 bits (151), Expect = 1e-09
Identities = 41/155 (26%), Positives = 70/155 (44%), Gaps = 4/155 (2%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
+D++ LP + G+ + VVVD + P A + + N++ +P +
Sbjct: 889 IDYIGPLP-PSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKAL---NMLTSIAIPKVL 944
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
SD+ FTS + G +L S+ YHPQ+ G+ +R ++ LL ++ W
Sbjct: 945 HSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLIGRPAKW 1004
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTP 155
LP+++ NNSY S P + L+G TP
Sbjct: 1005 YDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNTP 1039
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 62.4 bits (150), Expect = 2e-09
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 31/205 (15%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I+ G+P + SD P F ++ + L LG +L AY PQ+ GQ +R ++++
Sbjct: 926 LEEILPRFGIPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIK 985
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESV 165
L LE GG W + LPL N+ G+ P++ LYG P ESGE+
Sbjct: 986 ETLTKLALETGGKDWVTLLPLALLRARNT-PGRFGLTPYEILYG----GPPPILESGET- 1039
Query: 166 VLGPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALE---------FQEGDHVFLRV 216
LGPD + ++ +KA + + D+ ++ + FQ GD V +R
Sbjct: 1040 -LGPD-----DRFLPVLFTHLKALEIVRTQIWDQIKEVYKPGTVTIPHPFQVGDQVLVR- 1092
Query: 217 TPMTGVGHALKSRKLTPKFIGPYQI 241
+ L P++ GPY +
Sbjct: 1093 --------RHRPSSLEPRWKGPYLV 1109
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 57.8 bits (138), Expect = 4e-08
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 4/155 (2%)
Query: 1 MDFVMSLPNTTRGHDSIWVVVDRLRKSAHFIPINIKYPVAQLAEIYIHNIVKLHGVPSSI 60
+D++ LP ++G+ + VVVD + P A + + N++ +P I
Sbjct: 681 IDYIGPLP-PSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSL---NVLTSIAIPKVI 736
Query: 61 VSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAW 120
SD+ FTS + G L S+ YHPQ+ + +R ++ LL ++ W
Sbjct: 737 HSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKW 796
Query: 121 DSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTP 155
LP+++ NN+Y + P + L+G TP
Sbjct: 797 YDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTP 831
>POL_SMSAV (P03359) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 294
Score = 57.4 bits (137), Expect = 5e-08
Identities = 54/196 (27%), Positives = 87/196 (43%), Gaps = 31/196 (15%)
Query: 56 VPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLE 115
+P + SD P F ++ + L LG +L AY PQ+ GQ +R ++++ L LE
Sbjct: 64 IPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALE 123
Query: 116 EGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHE 174
GG W + LPL N+ S G+ P++ LYG P ESG + LGPD
Sbjct: 124 TGGKDWVALLPLALLRAKNT-PSRFGLTPYEILYG----GPPPILESGGT--LGPD---- 172
Query: 175 TTEKVKMIRKKMKASQSRQKSYHDKRRKALE---------FQEGDHVFLRVTPMTGVGHA 225
+ ++ +KA + + D+ ++ + FQ GD V +R
Sbjct: 173 -DNFLPVLFTHLKALEVVRTQIWDQIKEVYKPGTVAIPHPFQVGDQVLVR---------R 222
Query: 226 LKSRKLTPKFIGPYQI 241
+ L P++ GPY +
Sbjct: 223 HRPGSLEPRWKGPYLV 238
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 57.0 bits (136), Expect = 6e-08
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 15/198 (7%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I G+P + SD P FTS+ +S+ D LG +L AY PQ+ GQ +R ++++
Sbjct: 959 LEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIK 1018
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESV 165
L L G W LPL + N+ G+ P++ LYG PL F +
Sbjct: 1019 ETLTKLTLAAGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPDMS 1075
Query: 166 VL--GPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVG 223
L P L + R+ K + D+ F+ GD V++R
Sbjct: 1076 ELTNSPSLQAHLQALQTVQREIWKPLAEAYRDQLDQPVIPHPFRIGDSVWVR-------- 1127
Query: 224 HALKSRKLTPKFIGPYQI 241
+++ L P++ GPY +
Sbjct: 1128 -RHQTKNLEPRWKGPYTV 1144
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 56.2 bits (134), Expect = 1e-07
Identities = 47/202 (23%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 19 VVVDRLRKSAHFIPINIKYPVAQLAEI-YIHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQ 77
VVVD K A + + ++ + I + I +HG P +I+SD + TS + +
Sbjct: 867 VVVDAKTKYAE---VKLTRSISAVTTIDLLEEIFSIHGYPETIISDNGTQLTSHLFAQMC 923
Query: 78 DALGSKLRLSSAYHPQTDGQSKRTIQSLEYLLRVCVLEEGGAWDSHLPLIEFTYNNSYHS 137
+ G + + S+ Y+P+++G ++R + +L+ + + EG L +Y N+ HS
Sbjct: 924 QSHGIEHKTSAVYYPRSNGAAERFVDTLKRGI-AKIKGEGSVNQQILNKFLISYRNTPHS 982
Query: 138 SI-GMAPFKALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVKMIRKKMKASQSRQKSY 196
++ G P + +GR+ RT + + V+ P K+ Q K +
Sbjct: 983 ALNGSTPAECHFGRKIRTTMSLLMPTDRVLKVP---------------KLTQYQQNMKHH 1027
Query: 197 HDKRR--KALEFQEGDHVFLRV 216
++ R +A FQ V+++V
Sbjct: 1028 YELRNGARAKAFQVNQKVYVQV 1049
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 53.1 bits (126), Expect = 9e-07
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 16/198 (8%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I G+P + SD P FTS+ +S+ D LG +L AY PQ+ GQ +R ++++
Sbjct: 607 LEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGID-KLHCAYRPQSSGQVERMNRTIK 665
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGESV 165
L L G W LPL + N+ G+ P++ LYG PL F +
Sbjct: 666 ETLTKLTLAAGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPDMS 722
Query: 166 VL--GPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVG 223
L P L + R+ K + D+ F+ GD V++R
Sbjct: 723 ELTNSPSLQAHLQALQTVQREIWKPLAEAYRDQLDQPVIPHPFRIGDSVWVR-------- 774
Query: 224 HALKSRKLTPKFIGPYQI 241
+++ L P++ GPY +
Sbjct: 775 -RHQTKNLEPRWKGPYTV 791
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 52.4 bits (124), Expect = 2e-06
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I G+P + +D P F S+ +++ D LG +L AY PQ+ GQ +R ++++
Sbjct: 964 LEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIK 1023
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGE-- 163
L L G W LPL + N+ G+ P++ LYG PL F +
Sbjct: 1024 ETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMA 1080
Query: 164 SVVLGPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVG 223
V P L + + + + + D+ F+ GD V++R
Sbjct: 1081 KVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVR-------- 1132
Query: 224 HALKSRKLTPKFIGPYQI 241
+++ L P++ GPY +
Sbjct: 1133 -RHQTKNLEPRWKGPYTV 1149
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 52.4 bits (124), Expect = 2e-06
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I G+P + +D P F S+ +++ D LG +L AY PQ+ GQ +R ++++
Sbjct: 964 LEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIK 1023
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGE-- 163
L L G W LPL + N+ G+ P++ LYG PL F +
Sbjct: 1024 ETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMA 1080
Query: 164 SVVLGPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVG 223
V P L + + + + + D+ F+ GD V++R
Sbjct: 1081 KVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVR-------- 1132
Query: 224 HALKSRKLTPKFIGPYQI 241
+++ L P++ GPY +
Sbjct: 1133 -RHQTKNLEPRWKGPYTV 1149
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 52.4 bits (124), Expect = 2e-06
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I G+P + +D P F S+ +++ D LG +L AY PQ+ GQ +R ++++
Sbjct: 964 LEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIK 1023
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGE-- 163
L L G W LPL + N+ G+ P++ LYG PL F +
Sbjct: 1024 ETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMA 1080
Query: 164 SVVLGPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVG 223
V P L + + + + + D+ F+ GD V++R
Sbjct: 1081 KVTHNPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVR-------- 1132
Query: 224 HALKSRKLTPKFIGPYQI 241
+++ L P++ GPY +
Sbjct: 1133 -RHQTKNLEPRWKGPYTV 1149
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 51.6 bits (122), Expect = 3e-06
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 15/198 (7%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I G+P + +D P F S+ +S+ LG +L AY PQ+ GQ +R ++++
Sbjct: 344 LEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIK 403
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGE-- 163
L L G W LPL + N+ G+ P++ LYG PL F E
Sbjct: 404 ETLTKLTLATGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPEMS 460
Query: 164 SVVLGPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVG 223
P L + R+ K + + D+ F+ GD V++R
Sbjct: 461 KFTNSPSLQAHLQALQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVR-------- 512
Query: 224 HALKSRKLTPKFIGPYQI 241
+++ L P++ GPY +
Sbjct: 513 -RHQTKNLEPRWKGPYTV 529
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 51.6 bits (122), Expect = 3e-06
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 15/198 (7%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I G+P + +D P F S+ +S+ LG +L AY PQ+ GQ +R ++++
Sbjct: 959 LEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIK 1018
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGE-- 163
L L G W LPL + N+ G+ P++ LYG PL F E
Sbjct: 1019 ETLTKLTLATGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPEMS 1075
Query: 164 SVVLGPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVG 223
P L + R+ K + + D+ F+ GD V++R
Sbjct: 1076 KFTNSPSLQAHLQALQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVR-------- 1127
Query: 224 HALKSRKLTPKFIGPYQI 241
+++ L P++ GPY +
Sbjct: 1128 -RHQTKNLEPRWKGPYTV 1144
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 51.6 bits (122), Expect = 3e-06
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 15/198 (7%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I G+P + +D P F S+ +S+ LG +L AY PQ+ GQ +R ++++
Sbjct: 168 LEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIK 227
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGE-- 163
L L G W LPL + N+ G+ P++ LYG PL F E
Sbjct: 228 ETLTKLTLATGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPEMS 284
Query: 164 SVVLGPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVG 223
P L + R+ K + + D+ F+ GD V++R
Sbjct: 285 KFTNSPSLQAHLQALQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVR-------- 336
Query: 224 HALKSRKLTPKFIGPYQI 241
+++ L P++ GPY +
Sbjct: 337 -RHQTKNLEPRWKGPYTV 353
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 50.8 bits (120), Expect = 5e-06
Identities = 47/198 (23%), Positives = 84/198 (41%), Gaps = 15/198 (7%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I G+P + +D P F S+ +++ D LG +L AY PQ+ GQ +R ++++
Sbjct: 959 LEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIK 1018
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGE-- 163
L L G W LPL + N+ G+ P++ LYG PL F +
Sbjct: 1019 ETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMT 1075
Query: 164 SVVLGPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVG 223
V P L + + + + + D+ ++ GD V++R
Sbjct: 1076 RVTNSPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPYRVGDTVWVR-------- 1127
Query: 224 HALKSRKLTPKFIGPYQI 241
+++ L P++ GPY +
Sbjct: 1128 -RHQTKNLEPRWKGPYTV 1144
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 50.8 bits (120), Expect = 5e-06
Identities = 47/198 (23%), Positives = 84/198 (41%), Gaps = 15/198 (7%)
Query: 47 IHNIVKLHGVPSSIVSDRDPRFTSRFWKSLQDALGSKLRLSSAYHPQTDGQSKRTIQSLE 106
+ I G+P + +D P F S+ +++ D LG +L AY PQ+ GQ +R ++++
Sbjct: 45 LEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIK 104
Query: 107 YLLRVCVLEEGGA-WDSHLPLIEFTYNNSYHSSIGMAPFKALYGRRCRTPLCWFESGE-- 163
L L G W LPL + N+ G+ P++ LYG PL F +
Sbjct: 105 ETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFPDPDMT 161
Query: 164 SVVLGPDLVHETTEKVKMIRKKMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVG 223
V P L + + + + + D+ ++ GD V++R
Sbjct: 162 RVTNSPSLQAHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPYRVGDTVWVR-------- 213
Query: 224 HALKSRKLTPKFIGPYQI 241
+++ L P++ GPY +
Sbjct: 214 -RHQTKNLEPRWKGPYTV 230
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,306,887
Number of Sequences: 164201
Number of extensions: 1605663
Number of successful extensions: 3757
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3724
Number of HSP's gapped (non-prelim): 50
length of query: 329
length of database: 59,974,054
effective HSP length: 111
effective length of query: 218
effective length of database: 41,747,743
effective search space: 9101007974
effective search space used: 9101007974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC130807.4