BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC129091.14 + phase: 0
(439 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A4GT_PANTR (Q9N291) Lactosylceramide 4-alpha-galactosyltransfera... 112 1e-24
A4GT_HUMAN (Q9NPC4) Lactosylceramide 4-alpha-galactosyltransfera... 112 1e-24
A4GT_GORGO (Q9N290) Lactosylceramide 4-alpha-galactosyltransfera... 110 5e-24
A4GT_PONPY (Q9N289) Lactosylceramide 4-alpha-galactosyltransfera... 105 3e-22
A4GC_HUMAN (Q9UNA3) Alpha-1,4-N-acetylglucosaminyltransferase (E... 77 1e-13
YD6B_SCHPO (Q10323) Hypothetical protein C17G8.11c in chromosome I 37 0.13
CRB3_SCHPO (Q10272) WD-repeat protein crb3 35 0.29
VP40_BHV1C (P54817) Capsid protein P40 [Contains: Assemblin (Pro... 34 0.85
CYB_OCHHI (Q9GBY6) Cytochrome b 34 0.85
PDRC_YEAST (Q02785) ATP-dependent permease PDR12 33 1.5
CYB_NAPIN (Q8W9F5) Cytochrome b 32 2.5
CYB_MOSMO (O47583) Cytochrome b 32 2.5
MODB_BPT4 (P39421) NAD--protein ADP-ribosyltransferase modB (EC ... 32 3.2
CYB_GLAVO (Q9TF34) Cytochrome b 32 3.2
CYB_CRIEM (Q9T7N2) Cytochrome b 32 3.2
CYB_CORCU (Q9ZZD4) Cytochrome b 32 3.2
CYB_SPEER (Q9TF74) Cytochrome b 32 4.2
CYB_GLASA (O48372) Cytochrome b 32 4.2
CYB_SPERE (Q9TF73) Cytochrome b 31 5.5
CYB_SPEMA (Q9TF49) Cytochrome b 31 5.5
>A4GT_PANTR (Q9N291) Lactosylceramide 4-alpha-galactosyltransferase
(EC 2.4.1.228) (Alpha-1,4-galactosyltransferase)
(UDP-galactose:beta-D-galactosyl-beta1-R
4-alpha-D-galactosyltransferase)
(Alpha-1,4-N-acetylglucosaminyltransferase)
(Globotriaosylcerami
Length = 353
Score = 112 bits (281), Expect = 1e-24
Identities = 72/250 (28%), Positives = 124/250 (48%), Gaps = 37/250 (14%)
Query: 179 LLSVESLFKSHPKACLVIVSK-------SMDSDKGTQILRPFVKNGFRVIAIEPDFNYIF 231
+ SVES ++HP++ ++++ K S+ G +L F V + D +F
Sbjct: 95 MCSVESAARTHPESHVLVLMKGLPGGNASLPRHLGISLLSCFPN----VQMLPLDLRELF 150
Query: 232 KNTHAESWFNRLIQGNVNPGEISLGQNLSNLLRLSLLYKFGGIYIDADIIIMKSFSKFRN 291
++T W+ +QG P + + LS+ R++L++KFGGIY+D D I++K+ N
Sbjct: 151 QDTPLADWY-AAVQGRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKNLRNLTN 206
Query: 292 TIGAQNIDVKTKKWSRLNNAVLIFDKKHPLLLKFIEEFALTFDGNKWGHNGPYLISRVV- 350
+G Q+ V LN A L F+++H + + +F ++G WGH GP L++RV
Sbjct: 207 VLGTQSRYV-------LNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFK 259
Query: 351 ------SRVSGREGYNFSVVPPSAFYPVDWRGIKSLFRGPGDEIHSKWLVKKMVQIRKES 404
S R + +PP AFYP+ W+ K F E ++ ++ +
Sbjct: 260 KWCSIRSLAESRSCRGVTTLPPEAFYPIPWQDWKKYFEDINPE--------ELPRLLSAT 311
Query: 405 YAVHLWNRQS 414
YAVH+WN++S
Sbjct: 312 YAVHVWNKKS 321
>A4GT_HUMAN (Q9NPC4) Lactosylceramide 4-alpha-galactosyltransferase
(EC 2.4.1.228) (Alpha-1,4-galactosyltransferase)
(UDP-galactose:beta-D-galactosyl-beta1-R
4-alpha-D-galactosyltransferase)
(Alpha-1,4-N-acetylglucosaminyltransferase)
(Alpha4Gal-T1) (Glob
Length = 353
Score = 112 bits (281), Expect = 1e-24
Identities = 72/250 (28%), Positives = 124/250 (48%), Gaps = 37/250 (14%)
Query: 179 LLSVESLFKSHPKACLVIVSK-------SMDSDKGTQILRPFVKNGFRVIAIEPDFNYIF 231
+ SVES ++HP++ ++++ K S+ G +L F V + D +F
Sbjct: 95 MCSVESAARTHPESHVLVLMKGLPGGNASLPRHLGISLLSCFPN----VQMLPLDLRELF 150
Query: 232 KNTHAESWFNRLIQGNVNPGEISLGQNLSNLLRLSLLYKFGGIYIDADIIIMKSFSKFRN 291
++T W+ +QG P + + LS+ R++L++KFGGIY+D D I++K+ N
Sbjct: 151 RDTPLADWY-AAVQGRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKNLRNLTN 206
Query: 292 TIGAQNIDVKTKKWSRLNNAVLIFDKKHPLLLKFIEEFALTFDGNKWGHNGPYLISRVV- 350
+G Q+ V LN A L F+++H + + +F ++G WGH GP L++RV
Sbjct: 207 VLGTQSRYV-------LNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFK 259
Query: 351 ------SRVSGREGYNFSVVPPSAFYPVDWRGIKSLFRGPGDEIHSKWLVKKMVQIRKES 404
S R + +PP AFYP+ W+ K F E ++ ++ +
Sbjct: 260 KWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDINPE--------ELPRLLSAT 311
Query: 405 YAVHLWNRQS 414
YAVH+WN++S
Sbjct: 312 YAVHVWNKKS 321
>A4GT_GORGO (Q9N290) Lactosylceramide 4-alpha-galactosyltransferase
(EC 2.4.1.228) (Alpha-1,4-galactosyltransferase)
(UDP-galactose:beta-D-galactosyl-beta1-R
4-alpha-D-galactosyltransferase)
(Alpha-1,4-N-acetylglucosaminyltransferase)
(Globotriaosylcerami
Length = 327
Score = 110 bits (276), Expect = 5e-24
Identities = 72/250 (28%), Positives = 123/250 (48%), Gaps = 37/250 (14%)
Query: 179 LLSVESLFKSHPKACLVIVSK-------SMDSDKGTQILRPFVKNGFRVIAIEPDFNYIF 231
+ SVES ++HP++ ++++ K S+ G +L F V + D +F
Sbjct: 69 MCSVESAARTHPESHVLVLMKGLPGGNASLPRHLGISLLSCFPN----VQMLPLDLRELF 124
Query: 232 KNTHAESWFNRLIQGNVNPGEISLGQNLSNLLRLSLLYKFGGIYIDADIIIMKSFSKFRN 291
++T W+ +QG P + + LS+ R++L++KFGGIY+D D I++K+ N
Sbjct: 125 RDTPLADWY-AAVQGRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKNLRNLTN 180
Query: 292 TIGAQNIDVKTKKWSRLNNAVLIFDKKHPLLLKFIEEFALTFDGNKWGHNGPYLISRVV- 350
+G Q+ V LN A L F++ H + + +F ++G WGH GP L++RV
Sbjct: 181 VLGTQSRYV-------LNGAFLAFERXHEFMALCMXDFVDHYNGWIWGHQGPQLLTRVFK 233
Query: 351 ------SRVSGREGYNFSVVPPSAFYPVDWRGIKSLFRGPGDEIHSKWLVKKMVQIRKES 404
S R + +PP AFYP+ W+ K F E ++ ++ +
Sbjct: 234 KWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDINPE--------ELPRLFSAT 285
Query: 405 YAVHLWNRQS 414
YAVH+WN++S
Sbjct: 286 YAVHVWNKKS 295
>A4GT_PONPY (Q9N289) Lactosylceramide 4-alpha-galactosyltransferase
(EC 2.4.1.228) (Alpha-1,4-galactosyltransferase)
(UDP-galactose:beta-D-galactosyl-beta1-R
4-alpha-D-galactosyltransferase)
(Alpha-1,4-N-acetylglucosaminyltransferase)
(Globotriaosylcerami
Length = 218
Score = 105 bits (261), Expect = 3e-22
Identities = 60/196 (30%), Positives = 99/196 (49%), Gaps = 26/196 (13%)
Query: 226 DFNYIFKNTHAESWFNRLIQGNVNPGEISLGQNLSNLLRLSLLYKFGGIYIDADIIIMKS 285
D +F++T W+ +QG P + + LS+ R++L++KFGGIY+D D I++K+
Sbjct: 10 DLRELFRDTPLADWYTA-VQGRWEPYLLPV---LSDASRIALMWKFGGIYLDTDFIVLKN 65
Query: 286 FSKFRNTIGAQNIDVKTKKWSRLNNAVLIFDKKHPLLLKFIEEFALTFDGNKWGHNGPYL 345
N +G Q+ V LN A L F ++H + + +F ++G WGH GP L
Sbjct: 66 LRNLTNVLGTQSRYV-------LNGAFLAFQRRHEFMALCMRDFVDHYNGWIWGHQGPQL 118
Query: 346 ISRVV-------SRVSGREGYNFSVVPPSAFYPVDWRGIKSLFRGPGDEIHSKWLVKKMV 398
++RV S R + +PP AFYP+ W+ K F E ++
Sbjct: 119 LTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDISPE--------ELP 170
Query: 399 QIRKESYAVHLWNRQS 414
++ +YAVH+WN++S
Sbjct: 171 RLLNATYAVHVWNKKS 186
>A4GC_HUMAN (Q9UNA3) Alpha-1,4-N-acetylglucosaminyltransferase (EC
2.4.1.-) (Alpha4GnT)
Length = 340
Score = 76.6 bits (187), Expect = 1e-13
Identities = 68/271 (25%), Positives = 122/271 (44%), Gaps = 42/271 (15%)
Query: 181 SVESLFKSHPKACLVIVSKSMDSD-----KGTQILRPFVKNGFRVIAIEPDFNYIFKNTH 235
SVES K +P+ +V K + T F+ V D + ++T
Sbjct: 70 SVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAIDNVFLFPLDMKRLLEDTP 129
Query: 236 AESWFNRLIQGNVNPGEISLGQNLSNLLRLSLLYKFGGIYIDADIIIMKSFSKFRNTIGA 295
SW+N+ I + + + + S RL++++K+GGIY+D D+I ++ + N + A
Sbjct: 130 LFSWYNQ-INASAERNWLHISSDAS---RLAIIWKYGGIYMDTDVISIRPIPE-ENFLAA 184
Query: 296 QNIDVKTKKWSRLNNAVLIFDKKHPLLLKFIEEFALTFDGNKWGHNGPYLISRVV----- 350
Q ++S +N + F HP L + +E F ++ WG+ GP L++R++
Sbjct: 185 Q-----ASRYS--SNGIFGFLPHHPFLWECMENFVEHYNSAIWGNQGPELMTRMLRVWCK 237
Query: 351 ----SRVSGREGYNFSVVPPSAFYPVDWRGIKSLFRGPGDEIHSKWLVKKMVQIRKESYA 406
VS N S + P FYP+ +R + + W + + SYA
Sbjct: 238 LEDFQEVSDLRCLNISFLHPQRFYPISYREWR--------RYYEVWDTEPSFNV---SYA 286
Query: 407 VHLWN--RQSGKLEVVKGS--IIDSIISSCC 433
+HLWN Q G+ V++GS +++++ C
Sbjct: 287 LHLWNHMNQEGR-AVIRGSNTLVENLYRKHC 316
>YD6B_SCHPO (Q10323) Hypothetical protein C17G8.11c in chromosome I
Length = 356
Score = 36.6 bits (83), Expect = 0.13
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 221 IAIEPDFNYIFKNTHAES--------WFNRLIQGNVNPGEISLGQNLSNLLRLSLLYKFG 272
I + PD+ Y+ + WF L Q + P I ++++R +LYK+G
Sbjct: 82 IDLHPDYEYVLWTDESMREFIATDYPWF--LTQYDSYPYNIER----ADVVRYFILYKYG 135
Query: 273 GIYIDADIIIMKSFSKFRNTIGAQNIDVKTKKWSRLNNAVLIFDKKHPLLLKFI 326
GIY+D D+ ++ + V+ S ++N V+ F K HP LL+ +
Sbjct: 136 GIYLDLDVGCNRTLDPLLH----YPAWVRRTSPSGISNNVMGFAKGHPFLLQVV 185
>CRB3_SCHPO (Q10272) WD-repeat protein crb3
Length = 446
Score = 35.4 bits (80), Expect = 0.29
Identities = 41/158 (25%), Positives = 69/158 (42%), Gaps = 15/158 (9%)
Query: 268 LYKFGGIYIDADIIIMKSFSKFRNTIGAQNIDVKTKK-----WSRLNNAVLIFDKKH--P 320
++ FG +D II+ + +++ + T+K WS + A++ F + H P
Sbjct: 61 IHNFGKEILDQSIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYFFRAHYQP 120
Query: 321 L-LLKFIEEFALTFDGNKWGHNGPYLISRVVSRVSGREGYNFSVVPPSAFYPVDWRGIKS 379
L +LKF + + F + G +LIS +V + S E N SV S F R I S
Sbjct: 121 LTILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHF-SGHKRSIVS 179
Query: 380 LFRGPGDEIHSKWLVKKMVQIRKESYAVHLWNRQSGKL 417
+ GPG +V + E + +W+ +G L
Sbjct: 180 MEIGPGP------IVSGRLYTASEDNTIRIWDVSTGNL 211
>VP40_BHV1C (P54817) Capsid protein P40 [Contains: Assemblin
(Protease) (EC 3.4.21.97); Capsid assembly protein]
Length = 621
Score = 33.9 bits (76), Expect = 0.85
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 67 PHHYSPHKPLLLPPPSHTKTKLSSSVFFAHKE 98
PHH+SP P PPPSH +KL+S+V +E
Sbjct: 473 PHHHSPPPPH--PPPSHALSKLASAVSSLQQE 502
>CYB_OCHHI (Q9GBY6) Cytochrome b
Length = 379
Score = 33.9 bits (76), Expect = 0.85
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 7 HHHNPFLYFPLLLLHKLHHFLH----NFKKKILSILFKLP---------TSFFALLVLFL 53
H PF+ L+++H L FLH N I+S K+P T F LL+ L
Sbjct: 182 HFILPFIIAALVMVHLL--FLHETGSNNPTGIISDADKIPFHPYYTIKDTLGFLLLISLL 239
Query: 54 LAYNAFTVFCIHIPHHYSPHKPLLLPP 80
LA F+ + P +Y+P PL PP
Sbjct: 240 LALVLFSPDLLGDPDNYTPANPLNTPP 266
>PDRC_YEAST (Q02785) ATP-dependent permease PDR12
Length = 1511
Score = 33.1 bits (74), Expect = 1.5
Identities = 14/47 (29%), Positives = 26/47 (54%)
Query: 10 NPFLYFPLLLLHKLHHFLHNFKKKILSILFKLPTSFFALLVLFLLAY 56
N F P+++ HK + H + + I+ + PT F A+++L L+ Y
Sbjct: 567 NSFSSRPVIVKHKSYSMYHLSAESLQEIITEFPTKFVAIVILCLITY 613
>CYB_NAPIN (Q8W9F5) Cytochrome b
Length = 379
Score = 32.3 bits (72), Expect = 2.5
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 7 HHHNPFLYFPLLLLHKLHHFLH----NFKKKILSILFKLP---------TSFFALLVLFL 53
H PF+ L ++H L FLH N ++S K+P F L+ LFL
Sbjct: 182 HFILPFIIAALAIVHLL--FLHETGSNNPTGLISDADKIPFHPHYTIKDALGFLLMSLFL 239
Query: 54 LAYNAFTVFCIHIPHHYSPHKPLLLPP 80
L+ F+ + P +YSP PL PP
Sbjct: 240 LSLVLFSPDLLGDPDNYSPANPLNTPP 266
>CYB_MOSMO (O47583) Cytochrome b
Length = 379
Score = 32.3 bits (72), Expect = 2.5
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 7 HHHNPFLYFPLLLLHKLHHFLH----NFKKKILSILFKLPTSFF---------ALLVLFL 53
H PF+ L ++H L FLH N I S + K+P + LL+L L
Sbjct: 182 HFILPFIIAALAMVHLL--FLHETGSNNPTGITSDMDKIPFHPYYTIKDILGILLLILIL 239
Query: 54 LAYNAFTVFCIHIPHHYSPHKPLLLPP 80
+A FT + P +Y+P PL PP
Sbjct: 240 MALVLFTPDLLGDPDNYTPANPLNTPP 266
>MODB_BPT4 (P39421) NAD--protein ADP-ribosyltransferase modB (EC
2.4.2.-)
Length = 200
Score = 32.0 bits (71), Expect = 3.2
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 199 KSMDSDKGTQILRPFVKNGFRVIAIEPDFNYIFKNTHAESWFNRLIQGNVNPGEISLGQN 258
KSMD+ I + GF + IE + I SW N +I+ + P + L +
Sbjct: 14 KSMDASVRASIREELLSEGFNLSEIELLIHCITNKPDDHSWLNEIIKSRLVPNDKPLWRG 73
Query: 259 LSNLLRLSLLYKFGGIYIDADIIIMKSFSKFRNTIGAQNIDVKTKKWSRLNNAVLIFDKK 318
+ + G I D ++ S+ K A ++ T+ +IF+ K
Sbjct: 74 VP--AETKQVLNQGIDIITFDKVVSASYDKNIALHFASGLEYNTQ---------VIFEFK 122
Query: 319 HPLLLKFIEEFAL 331
P++ F +E+A+
Sbjct: 123 APMVFNF-QEYAI 134
>CYB_GLAVO (Q9TF34) Cytochrome b
Length = 379
Score = 32.0 bits (71), Expect = 3.2
Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 15/87 (17%)
Query: 7 HHHNPFLYFPLLLLHKLHHFLH----NFKKKILSILFKLP---------TSFFALLVLFL 53
H PF+ L ++H L FLH N ++S K+P T F +L+L
Sbjct: 182 HFILPFIIAALAMIHLL--FLHETGSNNPSGLISDSDKIPFHPYFSIKDTLGFLILILIF 239
Query: 54 LAYNAFTVFCIHIPHHYSPHKPLLLPP 80
+ FT + P +Y+P PL PP
Sbjct: 240 MTLVLFTPDLLGDPDNYTPANPLNTPP 266
>CYB_CRIEM (Q9T7N2) Cytochrome b
Length = 380
Score = 32.0 bits (71), Expect = 3.2
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 7 HHHNPFLYFPLLLLHKLHHFLH----NFKKKILSILFKLPTSFF---------ALLVLFL 53
H PF+ L+++H L FLH N + S K+P + LL+LFL
Sbjct: 182 HFILPFIIVALVMVHLL--FLHETGSNNPTGLNSNADKIPFHPYYTTKDILGVLLLILFL 239
Query: 54 LAYNAFTVFCIHIPHHYSPHKPLLLPP 80
++ F + P +Y+P PL+ PP
Sbjct: 240 ISLVLFAPDLLGDPDNYTPANPLITPP 266
>CYB_CORCU (Q9ZZD4) Cytochrome b
Length = 380
Score = 32.0 bits (71), Expect = 3.2
Identities = 26/85 (30%), Positives = 37/85 (42%), Gaps = 11/85 (12%)
Query: 7 HHHNPFLYFPLLLLHK--LHHFLHNFKKKILSILFKLPTS---------FFALLVLFLLA 55
H PF+ L L+H LH N I+S K+P FAL++ L A
Sbjct: 183 HFLLPFMIAGLTLIHLTFLHESGSNNPLGIVSNCDKIPFHPYFSLKDFLGFALMLFLLTA 242
Query: 56 YNAFTVFCIHIPHHYSPHKPLLLPP 80
FT + P +++P PL+ PP
Sbjct: 243 LALFTPTLLGDPENFTPANPLVTPP 267
>CYB_SPEER (Q9TF74) Cytochrome b
Length = 379
Score = 31.6 bits (70), Expect = 4.2
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 7 HHHNPFLYFPLLLLHKLHHFLH----NFKKKILSILFKLPTSFF---------ALLVLFL 53
H PF+ L+++H L FLH N I+S K+P + LLVL L
Sbjct: 182 HFILPFIIAALVMVHLL--FLHETGSNNPSGIISDSDKIPFHPYYTIKDILGVLLLVLTL 239
Query: 54 LAYNAFTVFCIHIPHHYSPHKPLLLPP 80
+A F+ + P +Y+P PL PP
Sbjct: 240 MALVLFSPDLLGDPDNYTPANPLSTPP 266
>CYB_GLASA (O48372) Cytochrome b
Length = 379
Score = 31.6 bits (70), Expect = 4.2
Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 15/87 (17%)
Query: 7 HHHNPFLYFPLLLLHKLHHFLH----NFKKKILSILFKLP---------TSFFALLVLFL 53
H PF+ L ++H L FLH N ++S K+P T F +L+L
Sbjct: 182 HFVLPFIIAALAMVHLL--FLHETGSNNPSGLISDSDKIPFHPYFSIKDTLGFLILILIF 239
Query: 54 LAYNAFTVFCIHIPHHYSPHKPLLLPP 80
+ FT + P +Y+P PL PP
Sbjct: 240 MTLVLFTPDLLGDPDNYTPANPLNTPP 266
>CYB_SPERE (Q9TF73) Cytochrome b
Length = 379
Score = 31.2 bits (69), Expect = 5.5
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 7 HHHNPFLYFPLLLLHKLHHFLH----NFKKKILSILFKLPTSFF---------ALLVLFL 53
H PF+ L+++H L FLH N ++S K+P + LLVL L
Sbjct: 182 HFILPFIIAALVMVHLL--FLHETGSNNPSGLISDSDKIPFHPYYTIKDILGVLLLVLTL 239
Query: 54 LAYNAFTVFCIHIPHHYSPHKPLLLPP 80
+A F+ + P +Y+P PL PP
Sbjct: 240 MALVLFSPDLLGDPDNYTPANPLTTPP 266
>CYB_SPEMA (Q9TF49) Cytochrome b
Length = 379
Score = 31.2 bits (69), Expect = 5.5
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 7 HHHNPFLYFPLLLLHKLHHFLH----NFKKKILSILFKLPTSFF---------ALLVLFL 53
H PF+ L+++H L FLH N ++S K+P + LLVL L
Sbjct: 182 HFILPFIIVALVMVHLL--FLHETGSNNPSGLISDSDKIPFHPYYTIKDILGVLLLVLTL 239
Query: 54 LAYNAFTVFCIHIPHHYSPHKPLLLPP 80
+A F+ + P +Y+P PL PP
Sbjct: 240 MALVLFSPDLLGDPDNYTPANPLSTPP 266
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.326 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,903,463
Number of Sequences: 164201
Number of extensions: 2283201
Number of successful extensions: 7331
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 7304
Number of HSP's gapped (non-prelim): 41
length of query: 439
length of database: 59,974,054
effective HSP length: 113
effective length of query: 326
effective length of database: 41,419,341
effective search space: 13502705166
effective search space used: 13502705166
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)
Medicago: description of AC129091.14