BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC127428.4 + phase: 0
(358 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP95_CAEEL (Q09244) Hypothetical protein C28H8.5 in chromosome III 32 3.2
HS74_HUMAN (P34932) Heat shock 70 kDa protein 4 (Heat shock 70-r... 31 4.2
DPOA_DROME (P26019) DNA polymerase alpha catalytic subunit (EC 2... 31 4.2
Z275_HUMAN (Q9NSD4) Zinc finger protein 275 31 5.5
LRP2_RAT (P98158) Low-density lipoprotein receptor-related prote... 30 7.2
BPEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7 (Bul... 30 9.4
BPEA_HUMAN (O94833) Bullous pemphigoid antigen 1, isoforms 6/9/1... 30 9.4
BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/... 30 9.4
>YP95_CAEEL (Q09244) Hypothetical protein C28H8.5 in chromosome III
Length = 302
Score = 31.6 bits (70), Expect = 3.2
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 261 GVWKNRF---AILRSMPKFKYETQVHIVVA--TMAIHNFIRRSAEMDVDFNLYEDENTVI 315
G W++ F A ++PKF Y QV I +A + H + D N+ + + T I
Sbjct: 140 GRWRSEFGGKAFFPTIPKFTYGEQVDITIADNSQDTHTPLLNYTAFAWDINMPDGDPTEI 199
Query: 316 HHDDDHRSTNLNQSQ-----SFNVASSS 338
H ++ + + ++ Q S N A S+
Sbjct: 200 HSENGYIAVEYDKEQEKEYVSLNTAMSN 227
>HS74_HUMAN (P34932) Heat shock 70 kDa protein 4 (Heat shock
70-related protein APG-2) (HSP70RY)
Length = 840
Score = 31.2 bits (69), Expect = 4.2
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 272 SMPKFKYETQVHIVVATMA-----IHNFIRRSAEMDVDFNLYEDENTVIHHDDDHRSTNL 326
S K K VH + + + +H M+ D N E+E + ++ H
Sbjct: 476 SKVKVKVRVNVHGIFSVSSASLVEVHKSEENEEPMETDQNAKEEEKMQVDQEEPHVEEQQ 535
Query: 327 NQSQSFNVASSSEMDHARNSIRDQ 350
Q+ + N A S EM+ ++ +D+
Sbjct: 536 QQTPAENKAESEEMETSQAGSKDK 559
>DPOA_DROME (P26019) DNA polymerase alpha catalytic subunit (EC
2.7.7.7)
Length = 1488
Score = 31.2 bits (69), Expect = 4.2
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 265 NRFAILRSMPKFKYETQVHIVVATMAIHNFIRRSAEMDVDFNLYEDENTVIHHDDDHR-- 322
NRF I R P+ + + + + S +D++F + + ++T +H D R
Sbjct: 590 NRFHIDRPAPQPAFNRHMCALTRPAVV------SWPLDLNFEMAKYKSTTVHKHDSERAL 643
Query: 323 -STNLNQSQSFN---VASSSEMDHARNSIRDQIIAYKL 356
S L Q Q + + + MD N I DQI+A K+
Sbjct: 644 LSWFLAQYQKIDADLIVTFDSMDCQLNVITDQIVALKI 681
>Z275_HUMAN (Q9NSD4) Zinc finger protein 275
Length = 458
Score = 30.8 bits (68), Expect = 5.5
Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Query: 221 PYRCERYHLPEFRRSSGFENHNEVFNYYHSSLRCTIERTFGVWKNRFAILRSMP 274
PY C++ FRRSSG H + + + RC + V+K R A+ + P
Sbjct: 405 PYECDKCG-KAFRRSSGLSRHRRI---HSGARRCECSQCGRVFKRRSALQKHQP 454
>LRP2_RAT (P98158) Low-density lipoprotein receptor-related protein 2
precursor (Megalin) (Glycoprotein 330) (gp330)
Length = 4660
Score = 30.4 bits (67), Expect = 7.2
Identities = 34/160 (21%), Positives = 61/160 (37%), Gaps = 21/160 (13%)
Query: 49 LTGHAWVQEILQGNPTRCYEMFRMEKHIFHKLCHELVEHDLKSSKHMGVEEMVAMFLVVV 108
+TG + ++LQG +F + V HD + V EM+A+
Sbjct: 1477 VTGRVFWSDLLQGKTWS----------VFQNGTDKRVVHD----SGLSVTEMIAV----- 1517
Query: 109 GHGVGNRMIQERFQHSGETVRVIDGTHVSCVVSAS-EQPRFIGRKGYPTQNIMAVCDWNM 167
+G + + V IDG+H + ++S + +PR + N+M DW
Sbjct: 1518 -DWIGRNLYWTDYALETIEVSKIDGSHRTVLISKNVTKPRGLALDPRMGDNVMFWSDWGH 1576
Query: 168 CFTFVLAGWEGTAHDARVFDKALTTANLNFPHPPQGKYYL 207
A +GT V +K L+ +P + Y++
Sbjct: 1577 HPRIERASMDGTMRTVIVQEKIYWPCGLSIDYPNRLIYFM 1616
>BPEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7
(Bullous pemphigoid antigen) (BPA) (Hemidesmosomal
plaque protein) (Dystonia musculorum protein) (Dystonin)
(Fragment)
Length = 3060
Score = 30.0 bits (66), Expect = 9.4
Identities = 18/67 (26%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
Query: 291 IHNFIRRSAEMDVDFNLYEDENTVIHHDDDHRSTNLNQSQSFNVASSSEMDHARNSIRD- 349
+HNF+ R+ + N E+E + +D R+TN+ + + ++ E+D +I+
Sbjct: 375 LHNFVSRATNELIWLNEKEEEE--VAYDWSERNTNIARKKDYHAELMRELDQKEENIKSV 432
Query: 350 QIIAYKL 356
Q IA +L
Sbjct: 433 QEIAEQL 439
>BPEA_HUMAN (O94833) Bullous pemphigoid antigen 1, isoforms 6/9/10
(Trabeculin-beta) (Bullous pemphigoid antigen) (BPA)
(Hemidesmosomal plaque protein) (Dystonia musculorum
protein) (Dystonin)
Length = 5171
Score = 30.0 bits (66), Expect = 9.4
Identities = 18/67 (26%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
Query: 291 IHNFIRRSAEMDVDFNLYEDENTVIHHDDDHRSTNLNQSQSFNVASSSEMDHARNSIRD- 349
+HNF+ R+ + N E+E + +D R+TN+ + + ++ E+D +I+
Sbjct: 375 LHNFVSRATNELIWLNEKEEEE--VAYDWSERNTNIARKKDYHAELMRELDQKEENIKSV 432
Query: 350 QIIAYKL 356
Q IA +L
Sbjct: 433 QEIAEQL 439
>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms
1/2/3/4/5/8 (230 kDa bullous pemphigoid antigen) (BPA)
(Hemidesmosomal plaque protein) (Dystonia musculorum
protein) (Dystonin) (Fragment)
Length = 3214
Score = 30.0 bits (66), Expect = 9.4
Identities = 18/67 (26%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
Query: 291 IHNFIRRSAEMDVDFNLYEDENTVIHHDDDHRSTNLNQSQSFNVASSSEMDHARNSIRD- 349
+HNF+ R+ + N E+E + +D R+TN+ + + ++ E+D +I+
Sbjct: 890 LHNFVSRATNELIWLNEKEEEE--VAYDWSERNTNIARKKDYHAELMRELDQKEENIKSV 947
Query: 350 QIIAYKL 356
Q IA +L
Sbjct: 948 QEIAEQL 954
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,968,883
Number of Sequences: 164201
Number of extensions: 1880376
Number of successful extensions: 4218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4214
Number of HSP's gapped (non-prelim): 12
length of query: 358
length of database: 59,974,054
effective HSP length: 111
effective length of query: 247
effective length of database: 41,747,743
effective search space: 10311692521
effective search space used: 10311692521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Medicago: description of AC127428.4