BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127021.6 + phase: 0 /pseudo
         (408 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...    51  5e-06
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog               35  0.45
UDBG_RABIT (O19103) UDP-glucuronosyltransferase 2B16 precursor, ...    33  1.3

>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score = 51.2 bits (121), Expect = 5e-06
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 33  VYTFHIHRWPKIILNEITKIIRNFVWSGDCNQQKICTVAWNTMCRPK-DEGGLAIRDPFM 91
           VY     R  K++  ++T  +  F WS   N++KI  VAW  +C+ K D+GGL  RD   
Sbjct: 5   VYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGW 64

Query: 92  VNNASLLHLTRKFLTSQDQWAQLCRHILLSNAKPKNHYIHSSI 134
            N A L   + + +           H LLS      ++ HSS+
Sbjct: 65  FNQALLAKQSFRIIHQP--------HTLLSRLLRSRYFPHSSM 99


>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score = 34.7 bits (78), Expect = 0.45
 Identities = 22/90 (24%), Positives = 39/90 (42%), Gaps = 7/90 (7%)

Query: 1   DRIKSKLSTWHGRLLSIMGRAQLVNYVISGMLVYTFHI--HRWPKIILNEITKIIRNFVW 58
           + IK   + W     S +GR  +V   I   ++Y F+    + P     E+ K    F+W
Sbjct: 789 NEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIW 848

Query: 59  SGDCNQQKICTVAWNTMCRPKDEGGLAIRD 88
           +     QK   +A +T+ +    GG+ + D
Sbjct: 849 N-----QKRAHIAKSTLSQKNKAGGITLPD 873


>UDBG_RABIT (O19103) UDP-glucuronosyltransferase 2B16 precursor,
           microsomal (EC 2.4.1.17) (UDPGT) (Fragment)
          Length = 523

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 31/158 (19%)

Query: 131 HSSIWIGLKSWVDVVIQHSNLEHW*WKICFILHSALSMSVSDYI--VDGEWNLPTYFHVK 188
           H    +GL  + D   QH NL H   K   I     +MS SD++  +    N P+Y   K
Sbjct: 380 HGIPMVGLPLFAD---QHDNLAHMRAKGAAIRLDWKTMSSSDFLNALKTVINDPSY---K 433

Query: 189 DDVLTNKILQTTLPIKPVPDALQWLSTTDGHLTNKLTYLFVRGTCIKVPWHKLVWNTY-- 246
           +  +T   +    P+KP+  A+ W+     H   K          ++V  H L W  Y  
Sbjct: 434 EKAMTLSRIHHDQPMKPLDQAIFWIEFVMRHKGAK---------HLRVAAHDLTWFQYHS 484

Query: 247 ------------IPPTRVFICWRFIHNRLPTDENLRKR 272
                       I    V  CW  ++  +      +KR
Sbjct: 485 LDVIGFLLACLTITTYLVIKCWLLVYQNILMTGKKKKR 522


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.333    0.142    0.502 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,281,870
Number of Sequences: 164201
Number of extensions: 1961937
Number of successful extensions: 6234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6231
Number of HSP's gapped (non-prelim): 4
length of query: 408
length of database: 59,974,054
effective HSP length: 113
effective length of query: 295
effective length of database: 41,419,341
effective search space: 12218705595
effective search space used: 12218705595
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 67 (30.4 bits)