BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127021.2 - phase: 0 
         (377 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...    44  9e-04
NRDG_BPT4 (P07075) Anaerobic ribonucleoside-triphosphate reducta...    35  0.41
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type...    33  1.2
YGV7_SCHPO (O43021) Oxysterol-binding protein homolog C354.07c         31  4.5
ENV_HV1S3 (P19549) Envelope polyprotein GP160 precursor [Contain...    30  7.7

>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score = 43.5 bits (101), Expect = 9e-04
 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 6   GGLGVRRLQEFNIALLGKWCWRCLVDREGLWFKVLSSRYGEQRGRLR-EGGVTGSAWWRE 64
           GGLG R L  FN ALL K  +R +     L  ++L SRY      +    G   S  WR 
Sbjct: 55  GGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRS 114

Query: 65  IVKIQNGIGVEGGSWFEESISKRLGNGFNTFFWSDCWV 102
           I        + G       + + +G+G +T  W D W+
Sbjct: 115 I--------IHGRELLSRGLLRTIGDGIHTKVWLDRWI 144


>NRDG_BPT4 (P07075) Anaerobic ribonucleoside-triphosphate reductase
           activating protein (EC 1.97.1.4) (Class III anaerobic
           ribonucleotide reductase small component)
          Length = 156

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 13/82 (15%)

Query: 156 EIRNLLTNVTLQDTQPDVWLWQPNIGDGYTVRGVYQMLMRQEVHNHDVVSDAPWHKSVPL 215
           EI NL++ V  +  + D+WLW      GY    + Q+ M + V   DV+ D  + K++P 
Sbjct: 82  EISNLVSWVKARFPEKDIWLW-----TGYKFEDIKQLEMLKYV---DVIIDGKYEKNLPT 133

Query: 216 KVSICAWRLLRNR--WPTKDNL 235
           K     WR   N+  W   D +
Sbjct: 134 KK---LWRGSDNQRLWSNTDGV 152


>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R2 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1025

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 20/56 (35%), Positives = 26/56 (45%), Gaps = 1/56 (1%)

Query: 210 HKSVPLKVSICAWRLLRNRWPTKDNLVRRGVITNDTQLCVRGCGKNETIDHLIIHC 265
           H ++P  V I       N  PT   +  RG  TN   LC  GCG  ET+ H++  C
Sbjct: 809 HVAIPASVWIKYHHTRINALPTLMRM-SRGRRTNGNALCRAGCGLPETLYHVVQQC 863


>YGV7_SCHPO (O43021) Oxysterol-binding protein homolog C354.07c
          Length = 399

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 135 EDGEAWRWRRRLLAWEEELVVEIRNLLTNVTLQDTQPDVWLWQPNIGD 182
           E+ E   W RR   WEE    + RN L    L+  +P  W++   IGD
Sbjct: 340 EEAEGAVWARRYFKWEEH-DSDARNALAQAVLEVIEPGFWIY---IGD 383


>ENV_HV1S3 (P19549) Envelope polyprotein GP160 precursor [Contains:
           Exterior membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 852

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 26/80 (32%), Positives = 33/80 (40%), Gaps = 8/80 (10%)

Query: 75  EGGSWFEESISKRLGNGFNTFFWSDCWVGTVSFMERFRRLYDLSIHKDLSVGEMHALGWG 134
           EGG   +   S RL NGF   FW D        +  + RL DL +     V  +   GW 
Sbjct: 731 EGGGERDRDRSTRLVNGFLALFWDDL---RSLCLFSYHRLTDLLLIVARIVELLGRRGW- 786

Query: 135 EDGEAWR-WRRRLLAWEEEL 153
              E  + W   LL W +EL
Sbjct: 787 ---EVLKYWWNLLLYWSQEL 803


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.141    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,667,124
Number of Sequences: 164201
Number of extensions: 2112024
Number of successful extensions: 4888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4884
Number of HSP's gapped (non-prelim): 6
length of query: 377
length of database: 59,974,054
effective HSP length: 112
effective length of query: 265
effective length of database: 41,583,542
effective search space: 11019638630
effective search space used: 11019638630
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)