BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127020.7 + phase: 0 /pseudo
         (1459 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

LMP1_EBVR (P13198) Latent membrane protein 1 (LMP-1) (Protein p63)     35  1.5
LMP1_EBV (P03230) Latent membrane protein 1 (LMP-1) (Protein p63...    33  5.7
US26_HCMVA (P09699) Hypothetical protein HHLF5                         33  7.5
PSE1_MOUSE (P97371) Proteasome activator complex subunit 1 (Prot...    33  7.5

>LMP1_EBVR (P13198) Latent membrane protein 1 (LMP-1) (Protein p63)
          Length = 386

 Score = 35.0 bits (79), Expect = 1.5
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 19/133 (14%)

Query: 488 LFMIVIFL*TAPGEAGVLLY-FGVIL*IVILLIF---QEITLLLGLLIVLRVL*DLLVIM 543
           LF + I +    G A ++LY F ++L I+IL+IF   +++   LG L +L     LL+I 
Sbjct: 37  LFWLYIIMSNWTGGALLVLYAFALMLVIIILIIFIFRRDLLCPLGALCLL-----LLMIT 91

Query: 544 IILIAVVKMPRGIFYDNFHLNLQG----LGAFLAILMTSSIQVRKGGTPLDLLGLLTAFV 599
           ++LIA+  +     Y    L + G    LG ++ +L    I  R G T   LL    AF 
Sbjct: 92  LLLIALWNLHGQALYLGIVLFIFGCLLVLGLWIYLL---EILWRLGATIWQLLAFFLAF- 147

Query: 600 KLFLTLVYLMSRL 612
             FL ++ L+  L
Sbjct: 148 --FLDIILLIIAL 158


>LMP1_EBV (P03230) Latent membrane protein 1 (LMP-1) (Protein p63)
           [Contains: Protein p25]
          Length = 386

 Score = 33.1 bits (74), Expect = 5.7
 Identities = 40/130 (30%), Positives = 63/130 (47%), Gaps = 13/130 (10%)

Query: 488 LFMIVIFL*TAPGEAGVLLY-FGVIL*IVILLIF---QEITLLLGLLIVLRVL*DLLVIM 543
           LF + I +    G A ++LY F ++L I+IL+IF   +++   LG L +L     LL+I 
Sbjct: 37  LFWLYIVMSDWTGGALLVLYSFALMLIIIILIIFIFRRDLLCPLGALCIL-----LLMIT 91

Query: 544 IILIAVVKMPRGIFYDNFHLNLQGLGAFLAI-LMTSSIQVRKGGTPLDLLGLLTAFVKLF 602
           ++LIA+  +     +    L + G    L I +    +  R G T   LL    AF   F
Sbjct: 92  LLLIALWNLHGQALFLGIVLFIFGCLLVLGIWIYLLEMLWRLGATIWQLLAFFLAF---F 148

Query: 603 LTLVYLMSRL 612
           L L+ L+  L
Sbjct: 149 LDLILLIIAL 158


>US26_HCMVA (P09699) Hypothetical protein HHLF5
          Length = 603

 Score = 32.7 bits (73), Expect = 7.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 44  VLADREIQFAYFSERMSRAWKPGKRVTITKSVADRYLFQ----FHHKVDDARVLE-EGPW 98
           +L DR  +F YF       W+    V +  +V    ++Q    FH+ VDDA  LE  G  
Sbjct: 292 ILVDRACEFFYFDVSRREIWRLADSVDMLLTVGLLKIYQAGRRFHYAVDDAERLEVPGRC 351

Query: 99  LYDNF 103
            ++NF
Sbjct: 352 PHENF 356


>PSE1_MOUSE (P97371) Proteasome activator complex subunit 1
           (Proteasome activator 28-alpha subunit) (PA28alpha)
           (PA28a) (Activator of multicatalytic protease subunit 1)
           (11S regulator complex alpha subunit) (REG-alpha)
          Length = 249

 Score = 32.7 bits (73), Expect = 7.5
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)

Query: 236 PYLKPVTQRVGTAATNRWLQDPIPAVTPSHNSDVAAASVGRKTQTAGTGVVTNFHDRMTA 295
           P +K VT+++    T  WLQ  IP +   +N  VA        Q     ++TN H ++  
Sbjct: 119 PEIKDVTEQLNLVTT--WLQLQIPRIEDGNNFGVAV-------QEKVFELMTNLHTKLEG 169

Query: 296 FQTQLT 301
           F TQ++
Sbjct: 170 FHTQIS 175


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.351    0.158    0.526 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,938,666
Number of Sequences: 164201
Number of extensions: 5487323
Number of successful extensions: 20780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 20776
Number of HSP's gapped (non-prelim): 8
length of query: 1459
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1336
effective length of database: 39,777,331
effective search space: 53142514216
effective search space used: 53142514216
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 72 (32.3 bits)