BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126792.7 - phase: 0
(253 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro... 59 1e-08
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type... 50 4e-06
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type... 50 5e-06
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type... 45 2e-04
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains... 45 2e-04
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog 44 3e-04
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type... 44 4e-04
RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem... 42 0.001
YSM6_CAEEL (Q10126) Hypothetical protein F52C9.6 in chromosome III 42 0.001
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem... 41 0.002
POL_RSVP (P03354) Pol polyprotein [Contains: Reverse transcripta... 36 0.078
PO11_NASVI (Q03269) Retrovirus-related Pol polyprotein from type... 36 0.078
POL_HTL1A (P03362) Pol polyprotein [Contains: Reverse transcript... 36 0.10
POL_RSVSB (O92956) Pol polyprotein [Contains: Reverse transcript... 35 0.23
POL_RSVSA (Q04095) Pol polyprotein [Contains: Reverse transcript... 35 0.23
POL_HTL1C (P14078) Pol polyprotein [Contains: Reverse transcript... 35 0.23
POL_ALV (Q7SQ98) Pol polyprotein [Contains: Reverse transcriptas... 35 0.23
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog 35 0.23
RTP2_TRYBG (P15594) Retrotransposable element SLACS 132 kDa prot... 34 0.30
POL_BIV27 (P19561) Pol polyprotein [Contains: Protease (EC 3.4.2... 34 0.39
>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2)
Length = 1021
Score = 58.5 bits (140), Expect = 1e-08
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 21/141 (14%)
Query: 9 KDMYEGASTSVRTQDGTTEDFPITIGLHQGSTLSPYIFTLVLDVLTEHIQELAPRCML-- 66
+ + G +R+ GT E P+T G QGS P+I+ +++DVL +Q L P C L
Sbjct: 607 QSFFSGRRAVIRSSSGTVE-VPVTRGCPQGSISGPFIWDILMDVL---LQRLQPYCQLSA 662
Query: 67 FADDVVLV--GDSR---EEVNGRL----ETWRQALEAYGFCLSRSKTEYMECNFSGRRSK 117
+ADD++L+ G+SR EE +L ETW + G CLS SKT M + RR+
Sbjct: 663 YADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEV---GDCLSTSKTVIMLLKGALRRAP 719
Query: 118 STLEVKVGDHIIPQVTRFKYL 138
+ V+ +P V +YL
Sbjct: 720 T---VRFAGRNLPYVRSCRYL 737
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 606
Score = 50.4 bits (119), Expect = 4e-06
Identities = 57/201 (28%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 15 ASTSVRTQDGTTEDFPITIGLHQGSTLSPYIFTLVLDVLTEHIQE------LAPRC---- 64
A T++ TT I G+ QG LSP +F +VLD L + + + P C
Sbjct: 66 AYTNIVVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELVTRLNDEQPGASMTPACKIAS 125
Query: 65 MLFADDVVLVGDSREEVNGRLETWRQALEAYGFCLSRSK-TEYMECNFSGR---RSKSTL 120
+ FADD++L+ D +V L T G L+ K SGR RSK +
Sbjct: 126 LAFADDLLLLEDRDIDVPNSLATTCAYFRTRGMTLNPEKCASISAATVSGRSVPRSKPSF 185
Query: 121 EVKVGDHIIP--QVTRFKYLESFVQNDGEIEADVSHRIQVGWLKWRRASCVLCDKKVPFK 178
+ G +I P + FKYL + G + V + + WL+ +K P K
Sbjct: 186 TID-GRYIKPLGGINTFKYLGLTFSSTGVAKPTVYNLTR--WLRNL--------EKAPLK 234
Query: 179 LKGKFY--RTAVRSALLYGTE 197
KFY +T + L YG +
Sbjct: 235 PNQKFYILKTHLLPRLFYGLQ 255
>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
retrotransposable element R2DM [Contains: Protease (EC
3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
Endonuclease]
Length = 1057
Score = 50.1 bits (118), Expect = 5e-06
Identities = 40/149 (26%), Positives = 66/149 (43%), Gaps = 14/149 (9%)
Query: 4 YIRAIKDMYEGASTSVRTQDGTTEDFPITIGLHQGSTLSPYIFTLVLDVLTE-------- 55
++ +++ YEG TS+ ++E+F G+ QG LSP +F LV+D L
Sbjct: 508 FVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIGA 567
Query: 56 HIQELAPRCMLFADDVVLVGDSREEVNGRLETWRQALEAYGFCLSRSKTEYMECNFSGRR 115
+ FADD+VL ++R + L+ L G L+ K + ++
Sbjct: 568 KVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLDFLSIVGLKLNADKCFTVGIKGQPKQ 627
Query: 116 SKSTLEVK---VGDHIIPQVTR---FKYL 138
+ LE + VG IP + R +KYL
Sbjct: 628 KCTVLEAQSFYVGSSEIPSLKRTDEWKYL 656
>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1025
Score = 45.1 bits (105), Expect = 2e-04
Identities = 36/135 (26%), Positives = 60/135 (43%), Gaps = 15/135 (11%)
Query: 34 GLHQGSTLSPYIFTLVLDVLTEHIQELAPRCM--------LFADDVVLVGDSREEVNGRL 85
G+ QG LSP +F V+D + + E M +FADD+VL+ ++RE + L
Sbjct: 512 GVRQGDPLSPLLFNCVMDAVLRRLPENTGFLMGAEKIGALVFADDLVLLAETREGLQASL 571
Query: 86 ETWRQALEAYGFCLSRSKTEYMECNFSGRRSKSTLEV----KVGDHIIPQV---TRFKYL 138
L+ G + K + SG+ K +E VG+ I Q+ ++KYL
Sbjct: 572 SRIEAGLQEQGLEMMPRKCHTLALVPSGKEKKIKVETHKPFTVGNQEITQLGHADQWKYL 631
Query: 139 ESFVQNDGEIEADVS 153
+ G I+ ++
Sbjct: 632 GVVYNSYGPIQVKIN 646
>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1300
Score = 44.7 bits (104), Expect = 2e-04
Identities = 29/113 (25%), Positives = 49/113 (42%), Gaps = 12/113 (10%)
Query: 4 YIRAIKDMYEGASTSVRTQDGTTEDFPITIGLHQGSTLSPYIFTLVLDVLTEHIQELAP- 62
Y+ IK +Y +++ E P+ G QG LSPY+F +VL+VL I++
Sbjct: 652 YLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQKEI 711
Query: 63 ----------RCMLFADD-VVLVGDSREEVNGRLETWRQALEAYGFCLSRSKT 104
+ L ADD +V + D + L E G+ ++ +K+
Sbjct: 712 KGIQIGKEEVKISLLADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKS 764
>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
Length = 1260
Score = 44.3 bits (103), Expect = 3e-04
Identities = 34/155 (21%), Positives = 74/155 (46%), Gaps = 17/155 (10%)
Query: 4 YIRAIKDMYEGASTSVRTQDGTTEDFPITIGLHQGSTLSPYIFTLVLDVLT--------- 54
+++ I+ +Y + ++ + FP+ G QG LSP +F +V++VL
Sbjct: 625 FLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIREEKAI 684
Query: 55 --EHIQELAPRCMLFADD-VVLVGDSREEVNGRLETWRQALEAYGFCLSRSKT-EYMECN 110
HI + LFADD +V + ++R+ LE ++ G+ ++ K+ ++ N
Sbjct: 685 KGIHIGSEEIKLSLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTN 744
Query: 111 FSGRRSKSTLEVKVGDHIIPQVTRFKYLESFVQND 145
+++ T++ + ++P+ + KYL ++ D
Sbjct: 745 --NNQAEKTVKDSIPFTVVPK--KMKYLGVYLTKD 775
>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 711
Score = 43.9 bits (102), Expect = 4e-04
Identities = 57/204 (27%), Positives = 86/204 (41%), Gaps = 34/204 (16%)
Query: 15 ASTSVRTQDGT-TEDFPITIGLHQGSTLSPYIFTLVLDVLTEHIQ----------ELAPR 63
++T++R G+ T I G+ QG LSP++F VLD L +Q E
Sbjct: 180 STTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGIGGTIGEEKIP 239
Query: 64 CMLFADDVVLVGDSREEVNGRLETWRQALEAYGFCLSRSKTEYMECNFSG----RRSKST 119
+ FADD++L+ D+ + L T G L+ K+ + SG R+K
Sbjct: 240 VLAFADDLLLLEDNDVLLPTTLATVANFFRLRGMSLNAKKSVSISVAASGGVCIPRTKPF 299
Query: 120 LEVKVGDHIIPQVT----RFKYLESFVQNDGEIEADVSHRIQVGWLKWRRASCVLCDKKV 175
L V D+++ VT F+YL F G + V + + WLK C +
Sbjct: 300 LRV---DNVLLPVTDRMQTFRYLGHFFGLSGAAKPTVYNLSR--WLK--------CVEAA 346
Query: 176 PFKLKGK--FYRTAVRSALLYGTE 197
P K + K R V LLYG +
Sbjct: 347 PLKPEQKLSLIREHVVPKLLYGLQ 370
>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 42.4 bits (98), Expect = 0.001
Identities = 46/220 (20%), Positives = 93/220 (41%), Gaps = 17/220 (7%)
Query: 30 PITIGLHQGSTLSPYIFTLVLDVLTEH-----IQELAPRCMLFADDVVLVGDSR------ 78
PI G+ QGS L P ++++ + H + E +ADD ++ S+
Sbjct: 637 PIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSKSILAAT 696
Query: 79 EEVNGRLETWRQALEAYGFCLSRSKTEYMECNFSGRRSKSTLEVKVGDHIIPQVTRFKYL 138
+ L+ ++Q E + ++ K + R+ S V + +I +KYL
Sbjct: 697 SGLQEYLDAFQQWAENWNVRINAEKCANVT---FANRTGSCPGVSLNGRLIRHHQAYKYL 753
Query: 139 ESFVQNDGEIEADVSHRIQVGWLKWRRASCVLCDK-KVPFKLKGKFYRTAVRSALLYGTE 197
+ +++ Q K R S ++ + K+ K Y++ + L YG +
Sbjct: 754 GITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQ 813
Query: 198 CWAVKSQ-HENQVSVAEMRMLRWMSGKTRHDRIRNDIIRE 236
+ + ++ H N++ + + + LR +SG + R R DI R+
Sbjct: 814 VYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTR-DIERD 852
>YSM6_CAEEL (Q10126) Hypothetical protein F52C9.6 in chromosome III
Length = 279
Score = 42.0 bits (97), Expect = 0.001
Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 8/173 (4%)
Query: 67 FADDVVLVGDSREEVNGRLETWRQALEAYGFCLSRSKTEYMECNFSGRRSKSTLEVKVGD 126
FADD+VL+ + + L+ Q G ++ KT+ + N SK
Sbjct: 13 FADDIVLIANHPNTASKMLQELVQKCSEVGLEINTGKTKVLR-NRLADPSKVYFGSPSST 71
Query: 127 HIIPQVTRFKYLESFVQNDGEIEADVSHRIQVGWLKW---RRASCVLCDKKVPFKLKGKF 183
+ V + YL + + ++ R + W + + + + DKK+ L
Sbjct: 72 TQLDDVDEYIYLGRQINAHNNLMPEIHRRRRAAWAAFNGSKNTTDSITDKKIRVNL---- 127
Query: 184 YRTAVRSALLYGTECWAVKSQHENQVSVAEMRMLRWMSGKTRHDRIRNDIIRE 236
+ + V AL YG+E W +V + + R + G T + D+ RE
Sbjct: 128 FDSIVLPALTYGSEAWTFNKALSERVRITHASLERRLVGITLTQQRERDLHRE 180
>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 41.2 bits (95), Expect = 0.002
Identities = 54/239 (22%), Positives = 101/239 (41%), Gaps = 20/239 (8%)
Query: 8 IKDMYEGASTSVRTQDGTTEDFP-ITIGLHQGSTLSPYIFTL-VLDVLTEH-IQELAPRC 64
IK +EG SV T DG I G+ QGS L P ++++ D+ ++ + LA
Sbjct: 615 IKSFWEGRKFSV-TADGCRSSVKFIEAGVPQGSVLGPTLYSIFTADMPNQNAVTGLAEGE 673
Query: 65 ML---FADDVVLVGDSR--EEVNGRLETWRQALEAYGFCLSRSKTEYMECNFSGRRS-KS 118
+L +ADD+ ++ S E L+ + A + + + S N + + +
Sbjct: 674 VLIATYADDIAVLTKSTCIVEATDALQEYLDAFQEWAVKWNVSINAGKCANVTFTNAIRD 733
Query: 119 TLEVKVGDHIIPQVTRFKYLESFVQNDGEIEADV-----SHRIQVGWLKWRRASCVLCDK 173
V + ++ +KYL + + S R ++ + W A+
Sbjct: 734 CPGVTINGSLLSHTHEYKYLGVILDRSLTFRRHITSLQHSFRTRITKMNWLLAA----RN 789
Query: 174 KVPFKLKGKFYRTAVRSALLYGTECWAVKSQ-HENQVSVAEMRMLRWMSGKTRHDRIRN 231
K+ K K Y+ V L Y + + + ++ H N++ V + +MLR +SG + R R+
Sbjct: 790 KLSLDNKVKIYKCIVAPGLFYAIQVYGIAARTHLNKIRVLQAKMLRKISGAPWYMRTRD 848
>POL_RSVP (P03354) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN) (pp32)]
Length = 895
Score = 36.2 bits (82), Expect = 0.078
Identities = 41/153 (26%), Positives = 62/153 (39%), Gaps = 24/153 (15%)
Query: 35 LHQGSTLSPYIFTLVLDVLTEHIQELAPR-CML-FADDVVLVGDSREEVNGRLETWRQAL 92
L QG T SP I LV+ + E ++ P CML + DD++L S + + E L
Sbjct: 146 LPQGMTCSPTICQLVVGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTL 205
Query: 93 EAYGFCLSRSKTEYME-CNFSGRRSKSTLEVKVGDHIIPQVTRFKYLESFVQNDGEIEAD 151
E GF +S K + + G + ST VG P++ ++
Sbjct: 206 ERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKL---------- 255
Query: 152 VSHRIQVGWLKWRRASCVLCDKKVPFKLKGKFY 184
VG L+W R + +P +L G FY
Sbjct: 256 ------VGSLQWLRPAL-----GIPPRLMGPFY 277
>PO11_NASVI (Q03269) Retrovirus-related Pol polyprotein from type I
retrotransposable element R1 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 337
Score = 36.2 bits (82), Expect = 0.078
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 34 GLHQGSTLSPYIFTLVLDVLTEHIQELAPRCMLFADDVVLVGDSREEVNGRLETWRQALE 93
G QGS PY++ L ++ L + + + R + +ADD+++V + N R+E R A E
Sbjct: 1 GCPQGSISGPYMWNLCMNGLLDRLSAMNERIVAYADDLMIVANG----NSRMEMERMADE 56
Query: 94 A----------YGFCLSRSKTEYM----ECNFSGRRSK 117
G +S KT + + N GRR +
Sbjct: 57 CMRIVYEWGREVGVSISEKKTVCIMLKGKLNVDGRRMR 94
>POL_HTL1A (P03362) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 896
Score = 35.8 bits (81), Expect = 0.10
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 35 LHQGSTLSPYIFTLVLDVLTEHIQELAPRCML--FADDVVLVGDSREEVNGRLETWRQAL 92
L QG SP +F + L + + I++ P+C + + DD++L S E++ E +L
Sbjct: 153 LPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSHEDLLLLSEATMASL 212
Query: 93 EAYGFCLSRSKTE 105
++G +S +KT+
Sbjct: 213 ISHGLPVSENKTQ 225
>POL_RSVSB (O92956) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN) (pp32)]
Length = 895
Score = 34.7 bits (78), Expect = 0.23
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 35 LHQGSTLSPYIFTLVLDVLTEHIQELAP--RCMLFADDVVLVGDSREEVNGRLETWRQAL 92
L QG T SP I LV+ + E ++ P R + + DD++L S + + E L
Sbjct: 146 LPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVINTL 205
Query: 93 EAYGFCLSRSKTEYME-CNFSGRRSKSTLEVKVGDHIIPQVTRFKYLESFVQNDGEIEAD 151
E GF +S K + + G + ST VG P++ ++
Sbjct: 206 ERAGFTISPDKIQREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKL---------- 255
Query: 152 VSHRIQVGWLKWRRASCVLCDKKVPFKLKGKFY 184
VG L+W R + +P +L G FY
Sbjct: 256 ------VGSLQWLRPAL-----GIPPRLMGPFY 277
>POL_RSVSA (Q04095) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN) (pp32)]
Length = 895
Score = 34.7 bits (78), Expect = 0.23
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 35 LHQGSTLSPYIFTLVLDVLTEHIQELAP--RCMLFADDVVLVGDSREEVNGRLETWRQAL 92
L QG T SP I LV+ + E ++ P R + + DD++L S + + E L
Sbjct: 146 LPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVISTL 205
Query: 93 EAYGFCLSRSKTEYME-CNFSGRRSKSTLEVKVGDHIIPQVTRFKYLESFVQNDGEIEAD 151
E GF +S K + + G + ST VG P++ ++
Sbjct: 206 ERAGFTISPDKIQREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKL---------- 255
Query: 152 VSHRIQVGWLKWRRASCVLCDKKVPFKLKGKFY 184
VG L+W R + +P +L G FY
Sbjct: 256 ------VGSLQWLRPAL-----GIPPRLMGPFY 277
>POL_HTL1C (P14078) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 896
Score = 34.7 bits (78), Expect = 0.23
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 35 LHQGSTLSPYIFTLVLDVLTEHIQELAPRCML--FADDVVLVGDSREEVNGRLETWRQAL 92
L QG SP +F + L + + I++ P+C + + DD++L S ++ E +L
Sbjct: 153 LPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSHADLQLLSEATMASL 212
Query: 93 EAYGFCLSRSKTE 105
++G +S +KT+
Sbjct: 213 ISHGLPVSENKTQ 225
>POL_ALV (Q7SQ98) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN) (pp32)]
Length = 895
Score = 34.7 bits (78), Expect = 0.23
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 35 LHQGSTLSPYIFTLVLDVLTEHIQELAP--RCMLFADDVVLVGDSREEVNGRLETWRQAL 92
L QG T SP I LV+ + E ++ P R + + DD++L S + + E L
Sbjct: 146 LPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAAGEEVISTL 205
Query: 93 EAYGFCLSRSKTEYME-CNFSGRRSKSTLEVKVGDHIIPQVTRFKYLESFVQNDGEIEAD 151
E GF +S K + + G + ST VG P++ ++
Sbjct: 206 ERAGFTISPDKIQREPGVQYLGYKLGSTYVAPVGLVAEPRIATLWDVQKL---------- 255
Query: 152 VSHRIQVGWLKWRRASCVLCDKKVPFKLKGKFY 184
VG L+W R + +P +L G FY
Sbjct: 256 ------VGSLQWLRPAL-----GIPPRLMGPFY 277
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
Length = 1259
Score = 34.7 bits (78), Expect = 0.23
Identities = 21/81 (25%), Positives = 39/81 (47%), Gaps = 11/81 (13%)
Query: 4 YIRAIKDMYEGASTSVRTQDGTTEDFPITIGLHQGSTLSPYIFTLVLDVLTEHIQELAP- 62
Y++ I+ +Y+ + ++ E P+ G QG LSP + +VL+VL I++
Sbjct: 625 YLKIIRAIYDKPTANIILNGQKLEAPPLKTGTRQGCPLSPLLPNIVLEVLARAIRQEKEI 684
Query: 63 ----------RCMLFADDVVL 73
+ LFADD+++
Sbjct: 685 KGIQLGKEEVKLSLFADDMIV 705
>RTP2_TRYBG (P15594) Retrotransposable element SLACS 132 kDa protein
(ORF2)
Length = 1182
Score = 34.3 bits (77), Expect = 0.30
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 32 TIGLHQGSTLSPYIFTLVLDVLTEHIQELAPRCMLFAD-DVVLVGDSREEVNGRLETWRQ 90
T G+ QG L P +F++ +Q+ P A D V V EE+ +
Sbjct: 702 TRGVRQGMVLGPLLFSIGTLATLRRLQQTFPEAQFTAYLDDVTVAAPPEELKNVCAATAE 761
Query: 91 ALEAYGFCLSRSKTEYME 108
A+EA G + KTE +E
Sbjct: 762 AMEALGIVNNADKTEVLE 779
>POL_BIV27 (P19561) Pol polyprotein [Contains: Protease (EC
3.4.23.-) (P119) (Retropepsin); Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT) (P72); Integrase (IN)]
Length = 1056
Score = 33.9 bits (76), Expect = 0.39
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 22 QDGTTEDFPITIGLHQGSTLSPYIFTLVLDVLTEHIQELAPRCMLFAD-DVVLVGDSREE 80
++G E F + L QG SP I+ + E+I++ P ML+ D +L+G +R++
Sbjct: 293 REGPIERFQWNV-LPQGWVCSPAIYQTTTQKIIENIKKSHPDVMLYQYMDDLLIGSNRDD 351
Query: 81 VNGRLETWRQALEAYGF 97
++ R L +YGF
Sbjct: 352 HKQIVQEIRDKLGSYGF 368
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,618,086
Number of Sequences: 164201
Number of extensions: 1105158
Number of successful extensions: 2438
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2421
Number of HSP's gapped (non-prelim): 47
length of query: 253
length of database: 59,974,054
effective HSP length: 108
effective length of query: 145
effective length of database: 42,240,346
effective search space: 6124850170
effective search space used: 6124850170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC126792.7