BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126787.10 - phase: 0
(306 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a 75 3e-13
RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b 70 9e-12
RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a 60 5e-09
RN13_MOUSE (O54965) RING finger protein 13 59 2e-08
RN13_CHICK (Q90972) RING finger protein 13 (C-RZF) 58 3e-08
Z364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Fragment) 55 2e-07
Z364_MOUSE (Q9D0C1) Zinc finger protein 364 55 2e-07
RN13_HUMAN (O43567) RING finger protein 13 55 2e-07
RN12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain interacti... 54 4e-07
GOLI_DROME (Q06003) Goliath protein (Protein g1) 54 5e-07
RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacti... 52 1e-06
YOF7_SCHPO (Q9P7E1) RING finger protein P4H10.07 in chromosome II 52 2e-06
RN11_MOUSE (Q9QYK7) RING finger protein 11 (Sid 1669) (Nedd4 WW ... 51 3e-06
RN11_HUMAN (Q9Y3C5) RING finger protein 11 (Sid 1669) (CGI-123) 51 3e-06
RH1A_ARATH (Q9SUS4) RING-H2 zinc finger protein RHA1a 51 4e-06
RH1B_ARATH (Q9SUS5) RING-H2 zinc finger protein RHA1b 50 5e-06
RNF6_HUMAN (Q9Y252) RING finger protein 6 (RING-H2 protein) 49 2e-05
R103_HUMAN (O00237) RING finger protein 103 (Zinc finger protein... 47 5e-05
R103_RAT (Q9EPZ8) RING finger protein 103 (Zinc finger protein 1... 47 6e-05
R103_MOUSE (Q9R1W3) RING finger protein 103 (Zinc finger protein... 47 6e-05
>RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a
Length = 185
Score = 74.7 bits (182), Expect = 3e-13
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 11 PPAPTYKTPPA-----LVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLV 65
PP P+ + A ++ L ++C + V C + L+R T+G
Sbjct: 14 PPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAW----------LRRFTAGG-- 61
Query: 66 RLSPDRSPSRGLDNTLLEKFPTFLYS---SVKDLRKEKSYSLECAICLLEFDDDSMLRLL 122
SP++GL L+ P ++ S E+ S ECAICL +F D +R+L
Sbjct: 62 ---DSPSPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVL 118
Query: 123 TICCHVFHQECIDLWLESHKTCPVCR 148
+C H FH ECID WL S +CP CR
Sbjct: 119 PLCGHSFHVECIDKWLVSRSSCPSCR 144
>RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b
Length = 200
Score = 69.7 bits (169), Expect = 9e-12
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 11/141 (7%)
Query: 19 PPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPDRSPSRGLD 78
PP + T +++ A VC A L+R T + + P++GL
Sbjct: 15 PPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPPNKGLK 74
Query: 79 NTLLEKFPTFLYSSVKDLRK-----------EKSYSLECAICLLEFDDDSMLRLLTICCH 127
L+ P Y++ + S ECAIC+ EF + +R+L +C H
Sbjct: 75 KKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSH 134
Query: 128 VFHQECIDLWLESHKTCPVCR 148
FH CID WL S +CP CR
Sbjct: 135 AFHVACIDKWLTSRSSCPSCR 155
>RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a
Length = 174
Score = 60.5 bits (145), Expect = 5e-09
Identities = 24/61 (39%), Positives = 36/61 (58%)
Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGN 165
C +CL EF+ L + +C H+FH +CI LWL SH TCP+CR+ + + S + +
Sbjct: 105 CCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISSTKTSVDDDND 164
Query: 166 H 166
H
Sbjct: 165 H 165
>RN13_MOUSE (O54965) RING finger protein 13
Length = 381
Score = 58.9 bits (141), Expect = 2e-08
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 29/152 (19%)
Query: 93 VKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWL-ESHKTCPVCR--- 148
V +K Y + CAICL E++D LR+L C H +H +C+D WL ++ KTCPVC+
Sbjct: 228 VHKFKKGDEYDV-CAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
Query: 149 ----------TDLDSPPNQMSKH-------------GEGNHNNNNNNLNVQEGMTSLPCD 185
TD NQ+S+H G+ + ++++ N+ E D
Sbjct: 286 VPSQGDSDSDTDSSQEENQVSEHTPLLPPSASARTQSFGSLSESHSHHNMTESSDYEDDD 345
Query: 186 DIHIDVRGEESDNVGEITRAQVHEGDQHDHHV 217
+ D +++ I Q+ + D+++
Sbjct: 346 NEETDSSDADNEITDHIVVVQLQPNGEQDYNI 377
>RN13_CHICK (Q90972) RING finger protein 13 (C-RZF)
Length = 381
Score = 58.2 bits (139), Expect = 3e-08
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 29/152 (19%)
Query: 93 VKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWL-ESHKTCPVCR--- 148
V +K Y + CAICL E++D LR+L C H +H +C+D WL ++ KTCPVC+
Sbjct: 228 VHKFKKGDEYDV-CAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
Query: 149 ----------TDLDSPPNQMSKH-------------GEGNHNNNNNNLNVQEGMTSLPCD 185
TD N++S++ G + ++++ N+ E D
Sbjct: 286 VPSQGDSDSETDSSQEENEVSENTPLLRPLASVSTQSFGALSESHSHQNMTESSEYEEDD 345
Query: 186 DIHIDVRGEESDNVGEITRAQVHEGDQHDHHV 217
+ +ID ES E Q+ D+ D+ V
Sbjct: 346 NDNIDSSDAESGVNEESVVVQLQPNDERDYRV 377
>Z364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Fragment)
Length = 232
Score = 55.5 bits (132), Expect = 2e-07
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 97 RKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLD---- 152
+++ LEC +C ++ + +R L C H FH CI WLE H TCPVCR L+
Sbjct: 147 QEQVDMGLECPVCKEDYTVEEEVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDS 205
Query: 153 SPPNQMSKHGEGNHNNNNNNLN 174
+ +Q ++ N +N++ LN
Sbjct: 206 TRQSQSTEASASNRFSNDSQLN 227
>Z364_MOUSE (Q9D0C1) Zinc finger protein 364
Length = 305
Score = 55.1 bits (131), Expect = 2e-07
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 97 RKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPN 156
+++ + LEC +C ++ + +R L C H FH CI WLE H TCPVCR L+ +
Sbjct: 220 QEQVNTGLECPVCKEDYTVEEKVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDS 278
Query: 157 ----QMSKHGEGNHNNNNNNLN 174
Q S+ N +N++ L+
Sbjct: 279 TRQTQSSEASASNRFSNDSQLH 300
>RN13_HUMAN (O43567) RING finger protein 13
Length = 381
Score = 55.1 bits (131), Expect = 2e-07
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 16/83 (19%)
Query: 93 VKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWL-ESHKTCPVCR--- 148
V +K Y + CAICL E++D LR+L C H +H +C+D WL ++ KTCPVC+
Sbjct: 228 VHKFKKGDEYDV-CAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
Query: 149 ----------TDLDSPPNQMSKH 161
TD N++++H
Sbjct: 286 VPSQGDSDSDTDSSQEENEVTEH 308
>RN12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain interacting
RING finger protein) (RING finger LIM domain-binding
protein) (R-LIM)
Length = 600
Score = 54.3 bits (129), Expect = 4e-07
Identities = 23/54 (42%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMS 159
C++C+ E+ + LR L C H FH CID WL + TCP+CR + S N+ S
Sbjct: 546 CSVCITEYTEGDKLRKLP-CSHEFHVHCIDRWLSENSTCPICRRAVLSSGNRES 598
>GOLI_DROME (Q06003) Goliath protein (Protein g1)
Length = 286
Score = 53.9 bits (128), Expect = 5e-07
Identities = 25/62 (40%), Positives = 36/62 (57%), Gaps = 6/62 (9%)
Query: 90 YSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRT 149
+S KDL + CAIC+ + +R+L C H FH+ CID WL H+TCP+C+
Sbjct: 117 FSDEKDLDSDC-----CAICIEAYKPTDTIRILP-CKHEFHKNCIDPWLIEHRTCPMCKL 170
Query: 150 DL 151
D+
Sbjct: 171 DV 172
>RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacting
RING finger protein) (RING finger LIM domain-binding
protein) (R-LIM) (NY-REN-43 antigen)
Length = 624
Score = 52.4 bits (124), Expect = 1e-06
Identities = 21/54 (38%), Positives = 33/54 (60%), Gaps = 1/54 (1%)
Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMS 159
C++C+ E+ + + LR L C H +H CID WL + TCP+CR + + N+ S
Sbjct: 570 CSVCITEYTEGNKLRKLP-CSHEYHVHCIDRWLSENSTCPICRRAVLASGNRES 622
>YOF7_SCHPO (Q9P7E1) RING finger protein P4H10.07 in chromosome II
Length = 583
Score = 51.6 bits (122), Expect = 2e-06
Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 82 LEKFPTFLYSSVKDLRKE------KSYSLECAICLLEFDDDSMLRLLTICCHVFHQECID 135
+EK P +S KDL K C +CL F+ + R L C H FH+ECID
Sbjct: 498 IEKPPV---ASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRECID 554
Query: 136 LWL-ESHKTCPVCRT 149
WL S +CP+CRT
Sbjct: 555 QWLTSSQNSCPLCRT 569
>RN11_MOUSE (Q9QYK7) RING finger protein 11 (Sid 1669) (Nedd4 WW
domain-binding protein 2)
Length = 154
Score = 51.2 bits (121), Expect = 3e-06
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 81 LLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLES 140
L++ P +Y +D ++K EC IC+++F +R L C H++H +CID WL
Sbjct: 76 LIQHLPKGVYDPGRDGSEKKIR--ECVICMMDFVYGDPIRFLP-CMHIYHLDCIDDWLMR 132
Query: 141 HKTCPVCRTDLDS 153
TCP C +D+
Sbjct: 133 SFTCPSCMEPVDA 145
>RN11_HUMAN (Q9Y3C5) RING finger protein 11 (Sid 1669) (CGI-123)
Length = 154
Score = 51.2 bits (121), Expect = 3e-06
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 81 LLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLES 140
L++ P +Y +D ++K EC IC+++F +R L C H++H +CID WL
Sbjct: 76 LIQHLPKGVYDPGRDGSEKKIR--ECVICMMDFVYGDPIRFLP-CMHIYHLDCIDDWLMR 132
Query: 141 HKTCPVCRTDLDS 153
TCP C +D+
Sbjct: 133 SFTCPSCMEPVDA 145
>RH1A_ARATH (Q9SUS4) RING-H2 zinc finger protein RHA1a
Length = 159
Score = 50.8 bits (120), Expect = 4e-06
Identities = 20/45 (44%), Positives = 27/45 (59%), Gaps = 2/45 (4%)
Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK--TCPVCR 148
C +CL +F+ D +R L C HVFH C+D W+ + CPVCR
Sbjct: 86 CTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVCR 130
>RH1B_ARATH (Q9SUS5) RING-H2 zinc finger protein RHA1b
Length = 157
Score = 50.4 bits (119), Expect = 5e-06
Identities = 21/45 (46%), Positives = 29/45 (63%), Gaps = 2/45 (4%)
Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWL-ESHK-TCPVCR 148
C +CL +F D +R L C HVFH C+D W+ + +K TCP+CR
Sbjct: 85 CTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICR 129
>RNF6_HUMAN (Q9Y252) RING finger protein 6 (RING-H2 protein)
Length = 685
Score = 48.5 bits (114), Expect = 2e-05
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 64 LVRLSPDRSPSRGLDNTLLEKFPT--FLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRL 121
L+ S D RGL ++ T + ++S+ + C++C+ ++ + LR
Sbjct: 593 LLNESDDDDRIRGLTKEQIDNLSTRHYEHNSI-----DSELGKICSVCISDYVTGNKLRQ 647
Query: 122 LTICCHVFHQECIDLWLESHKTCPVCR 148
L C H FH CID WL + TCP+CR
Sbjct: 648 LP-CMHEFHIHCIDRWLSENCTCPICR 673
>R103_HUMAN (O00237) RING finger protein 103 (Zinc finger protein
103 homolog) (Zfp-103) (KF-1) (hKF-1)
Length = 685
Score = 47.4 bits (111), Expect = 5e-05
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 105 ECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK-TCPVCRTDLDSPPNQMSKHGE 163
EC +CL F++ +L L C HVFHQ CI +WL + CPVCR P+ K
Sbjct: 620 ECVVCLENFENGCLLMGLP-CGHVFHQNCIVMWLAGGRHCCPVCRW-----PSYKKKQPY 673
Query: 164 GNHNNNNNNL 173
H +N++
Sbjct: 674 AQHQPLSNDV 683
>R103_RAT (Q9EPZ8) RING finger protein 103 (Zinc finger protein 103)
(Zfp-103) (ADRG34 protein)
Length = 682
Score = 47.0 bits (110), Expect = 6e-05
Identities = 22/45 (48%), Positives = 28/45 (61%), Gaps = 2/45 (4%)
Query: 105 ECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK-TCPVCR 148
EC +CL F++ +L L C HVFHQ CI +WL + CPVCR
Sbjct: 617 ECVVCLENFENGCLLMGLP-CGHVFHQNCIVMWLAGGRHCCPVCR 660
>R103_MOUSE (Q9R1W3) RING finger protein 103 (Zinc finger protein
103) (Zfp-103) (KF-1) (mKF-1)
Length = 683
Score = 47.0 bits (110), Expect = 6e-05
Identities = 22/45 (48%), Positives = 28/45 (61%), Gaps = 2/45 (4%)
Query: 105 ECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK-TCPVCR 148
EC +CL F++ +L L C HVFHQ CI +WL + CPVCR
Sbjct: 618 ECVVCLENFENGCLLMGLP-CGHVFHQNCIVMWLAGGRHCCPVCR 661
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,354,846
Number of Sequences: 164201
Number of extensions: 1714292
Number of successful extensions: 6762
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 6406
Number of HSP's gapped (non-prelim): 247
length of query: 306
length of database: 59,974,054
effective HSP length: 110
effective length of query: 196
effective length of database: 41,911,944
effective search space: 8214741024
effective search space used: 8214741024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC126787.10