Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126787.10 - phase: 0 
         (306 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a                  75  3e-13
RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b                  70  9e-12
RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a                  60  5e-09
RN13_MOUSE (O54965) RING finger protein 13                             59  2e-08
RN13_CHICK (Q90972) RING finger protein 13 (C-RZF)                     58  3e-08
Z364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Fragment)                 55  2e-07
Z364_MOUSE (Q9D0C1) Zinc finger protein 364                            55  2e-07
RN13_HUMAN (O43567) RING finger protein 13                             55  2e-07
RN12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain interacti...    54  4e-07
GOLI_DROME (Q06003) Goliath protein (Protein g1)                       54  5e-07
RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacti...    52  1e-06
YOF7_SCHPO (Q9P7E1) RING finger protein P4H10.07 in chromosome II      52  2e-06
RN11_MOUSE (Q9QYK7) RING finger protein 11 (Sid 1669) (Nedd4 WW ...    51  3e-06
RN11_HUMAN (Q9Y3C5) RING finger protein 11 (Sid 1669) (CGI-123)        51  3e-06
RH1A_ARATH (Q9SUS4) RING-H2 zinc finger protein RHA1a                  51  4e-06
RH1B_ARATH (Q9SUS5) RING-H2 zinc finger protein RHA1b                  50  5e-06
RNF6_HUMAN (Q9Y252) RING finger protein 6 (RING-H2 protein)            49  2e-05
R103_HUMAN (O00237) RING finger protein 103 (Zinc finger protein...    47  5e-05
R103_RAT (Q9EPZ8) RING finger protein 103 (Zinc finger protein 1...    47  6e-05
R103_MOUSE (Q9R1W3) RING finger protein 103 (Zinc finger protein...    47  6e-05

>RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a
          Length = 185

 Score = 74.7 bits (182), Expect = 3e-13
 Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 23/146 (15%)

Query: 11  PPAPTYKTPPA-----LVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLV 65
           PP P+ +   A     ++   L   ++C    + V  C +          L+R T+G   
Sbjct: 14  PPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAW----------LRRFTAGG-- 61

Query: 66  RLSPDRSPSRGLDNTLLEKFPTFLYS---SVKDLRKEKSYSLECAICLLEFDDDSMLRLL 122
                 SP++GL    L+  P   ++   S      E+  S ECAICL +F D   +R+L
Sbjct: 62  ---DSPSPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVL 118

Query: 123 TICCHVFHQECIDLWLESHKTCPVCR 148
            +C H FH ECID WL S  +CP CR
Sbjct: 119 PLCGHSFHVECIDKWLVSRSSCPSCR 144


>RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b
          Length = 200

 Score = 69.7 bits (169), Expect = 9e-12
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 11/141 (7%)

Query: 19  PPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPDRSPSRGLD 78
           PP  +    T +++   A     VC    A       L+R T  +   +     P++GL 
Sbjct: 15  PPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPPNKGLK 74

Query: 79  NTLLEKFPTFLYSSVKDLRK-----------EKSYSLECAICLLEFDDDSMLRLLTICCH 127
              L+  P   Y++                 +   S ECAIC+ EF +   +R+L +C H
Sbjct: 75  KKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSH 134

Query: 128 VFHQECIDLWLESHKTCPVCR 148
            FH  CID WL S  +CP CR
Sbjct: 135 AFHVACIDKWLTSRSSCPSCR 155


>RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a
          Length = 174

 Score = 60.5 bits (145), Expect = 5e-09
 Identities = 24/61 (39%), Positives = 36/61 (58%)

Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGN 165
           C +CL EF+    L  + +C H+FH +CI LWL SH TCP+CR+ +     + S   + +
Sbjct: 105 CCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSVSISSTKTSVDDDND 164

Query: 166 H 166
           H
Sbjct: 165 H 165


>RN13_MOUSE (O54965) RING finger protein 13
          Length = 381

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 29/152 (19%)

Query: 93  VKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWL-ESHKTCPVCR--- 148
           V   +K   Y + CAICL E++D   LR+L  C H +H +C+D WL ++ KTCPVC+   
Sbjct: 228 VHKFKKGDEYDV-CAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKV 285

Query: 149 ----------TDLDSPPNQMSKH-------------GEGNHNNNNNNLNVQEGMTSLPCD 185
                     TD     NQ+S+H               G+ + ++++ N+ E       D
Sbjct: 286 VPSQGDSDSDTDSSQEENQVSEHTPLLPPSASARTQSFGSLSESHSHHNMTESSDYEDDD 345

Query: 186 DIHIDVRGEESDNVGEITRAQVHEGDQHDHHV 217
           +   D    +++    I   Q+    + D+++
Sbjct: 346 NEETDSSDADNEITDHIVVVQLQPNGEQDYNI 377


>RN13_CHICK (Q90972) RING finger protein 13 (C-RZF)
          Length = 381

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 29/152 (19%)

Query: 93  VKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWL-ESHKTCPVCR--- 148
           V   +K   Y + CAICL E++D   LR+L  C H +H +C+D WL ++ KTCPVC+   
Sbjct: 228 VHKFKKGDEYDV-CAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKV 285

Query: 149 ----------TDLDSPPNQMSKH-------------GEGNHNNNNNNLNVQEGMTSLPCD 185
                     TD     N++S++               G  + ++++ N+ E       D
Sbjct: 286 VPSQGDSDSETDSSQEENEVSENTPLLRPLASVSTQSFGALSESHSHQNMTESSEYEEDD 345

Query: 186 DIHIDVRGEESDNVGEITRAQVHEGDQHDHHV 217
           + +ID    ES    E    Q+   D+ D+ V
Sbjct: 346 NDNIDSSDAESGVNEESVVVQLQPNDERDYRV 377


>Z364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Fragment)
          Length = 232

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 97  RKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLD---- 152
           +++    LEC +C  ++  +  +R L  C H FH  CI  WLE H TCPVCR  L+    
Sbjct: 147 QEQVDMGLECPVCKEDYTVEEEVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDS 205

Query: 153 SPPNQMSKHGEGNHNNNNNNLN 174
           +  +Q ++    N  +N++ LN
Sbjct: 206 TRQSQSTEASASNRFSNDSQLN 227


>Z364_MOUSE (Q9D0C1) Zinc finger protein 364
          Length = 305

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 97  RKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPN 156
           +++ +  LEC +C  ++  +  +R L  C H FH  CI  WLE H TCPVCR  L+   +
Sbjct: 220 QEQVNTGLECPVCKEDYTVEEKVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDS 278

Query: 157 ----QMSKHGEGNHNNNNNNLN 174
               Q S+    N  +N++ L+
Sbjct: 279 TRQTQSSEASASNRFSNDSQLH 300


>RN13_HUMAN (O43567) RING finger protein 13
          Length = 381

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 16/83 (19%)

Query: 93  VKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWL-ESHKTCPVCR--- 148
           V   +K   Y + CAICL E++D   LR+L  C H +H +C+D WL ++ KTCPVC+   
Sbjct: 228 VHKFKKGDEYDV-CAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKV 285

Query: 149 ----------TDLDSPPNQMSKH 161
                     TD     N++++H
Sbjct: 286 VPSQGDSDSDTDSSQEENEVTEH 308


>RN12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain interacting
           RING finger protein) (RING finger LIM domain-binding
           protein) (R-LIM)
          Length = 600

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 23/54 (42%), Positives = 32/54 (58%), Gaps = 1/54 (1%)

Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMS 159
           C++C+ E+ +   LR L  C H FH  CID WL  + TCP+CR  + S  N+ S
Sbjct: 546 CSVCITEYTEGDKLRKLP-CSHEFHVHCIDRWLSENSTCPICRRAVLSSGNRES 598


>GOLI_DROME (Q06003) Goliath protein (Protein g1)
          Length = 286

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 25/62 (40%), Positives = 36/62 (57%), Gaps = 6/62 (9%)

Query: 90  YSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRT 149
           +S  KDL  +      CAIC+  +     +R+L  C H FH+ CID WL  H+TCP+C+ 
Sbjct: 117 FSDEKDLDSDC-----CAICIEAYKPTDTIRILP-CKHEFHKNCIDPWLIEHRTCPMCKL 170

Query: 150 DL 151
           D+
Sbjct: 171 DV 172


>RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacting
           RING finger protein) (RING finger LIM domain-binding
           protein) (R-LIM) (NY-REN-43 antigen)
          Length = 624

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 21/54 (38%), Positives = 33/54 (60%), Gaps = 1/54 (1%)

Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMS 159
           C++C+ E+ + + LR L  C H +H  CID WL  + TCP+CR  + +  N+ S
Sbjct: 570 CSVCITEYTEGNKLRKLP-CSHEYHVHCIDRWLSENSTCPICRRAVLASGNRES 622


>YOF7_SCHPO (Q9P7E1) RING finger protein P4H10.07 in chromosome II
          Length = 583

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 10/75 (13%)

Query: 82  LEKFPTFLYSSVKDLRKE------KSYSLECAICLLEFDDDSMLRLLTICCHVFHQECID 135
           +EK P    +S KDL K             C +CL  F+ +   R L  C H FH+ECID
Sbjct: 498 IEKPPV---ASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRECID 554

Query: 136 LWL-ESHKTCPVCRT 149
            WL  S  +CP+CRT
Sbjct: 555 QWLTSSQNSCPLCRT 569


>RN11_MOUSE (Q9QYK7) RING finger protein 11 (Sid 1669) (Nedd4 WW
           domain-binding protein 2)
          Length = 154

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 81  LLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLES 140
           L++  P  +Y   +D  ++K    EC IC+++F     +R L  C H++H +CID WL  
Sbjct: 76  LIQHLPKGVYDPGRDGSEKKIR--ECVICMMDFVYGDPIRFLP-CMHIYHLDCIDDWLMR 132

Query: 141 HKTCPVCRTDLDS 153
             TCP C   +D+
Sbjct: 133 SFTCPSCMEPVDA 145


>RN11_HUMAN (Q9Y3C5) RING finger protein 11 (Sid 1669) (CGI-123)
          Length = 154

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 81  LLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLES 140
           L++  P  +Y   +D  ++K    EC IC+++F     +R L  C H++H +CID WL  
Sbjct: 76  LIQHLPKGVYDPGRDGSEKKIR--ECVICMMDFVYGDPIRFLP-CMHIYHLDCIDDWLMR 132

Query: 141 HKTCPVCRTDLDS 153
             TCP C   +D+
Sbjct: 133 SFTCPSCMEPVDA 145


>RH1A_ARATH (Q9SUS4) RING-H2 zinc finger protein RHA1a
          Length = 159

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 20/45 (44%), Positives = 27/45 (59%), Gaps = 2/45 (4%)

Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK--TCPVCR 148
           C +CL +F+ D  +R L  C HVFH  C+D W+  +    CPVCR
Sbjct: 86  CTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVCR 130


>RH1B_ARATH (Q9SUS5) RING-H2 zinc finger protein RHA1b
          Length = 157

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 21/45 (46%), Positives = 29/45 (63%), Gaps = 2/45 (4%)

Query: 106 CAICLLEFDDDSMLRLLTICCHVFHQECIDLWL-ESHK-TCPVCR 148
           C +CL +F  D  +R L  C HVFH  C+D W+ + +K TCP+CR
Sbjct: 85  CTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICR 129


>RNF6_HUMAN (Q9Y252) RING finger protein 6 (RING-H2 protein)
          Length = 685

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 64  LVRLSPDRSPSRGLDNTLLEKFPT--FLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRL 121
           L+  S D    RGL    ++   T  + ++S+     +      C++C+ ++   + LR 
Sbjct: 593 LLNESDDDDRIRGLTKEQIDNLSTRHYEHNSI-----DSELGKICSVCISDYVTGNKLRQ 647

Query: 122 LTICCHVFHQECIDLWLESHKTCPVCR 148
           L  C H FH  CID WL  + TCP+CR
Sbjct: 648 LP-CMHEFHIHCIDRWLSENCTCPICR 673


>R103_HUMAN (O00237) RING finger protein 103 (Zinc finger protein
           103 homolog) (Zfp-103) (KF-1) (hKF-1)
          Length = 685

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 105 ECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK-TCPVCRTDLDSPPNQMSKHGE 163
           EC +CL  F++  +L  L  C HVFHQ CI +WL   +  CPVCR      P+   K   
Sbjct: 620 ECVVCLENFENGCLLMGLP-CGHVFHQNCIVMWLAGGRHCCPVCRW-----PSYKKKQPY 673

Query: 164 GNHNNNNNNL 173
             H   +N++
Sbjct: 674 AQHQPLSNDV 683


>R103_RAT (Q9EPZ8) RING finger protein 103 (Zinc finger protein 103)
           (Zfp-103) (ADRG34 protein)
          Length = 682

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 22/45 (48%), Positives = 28/45 (61%), Gaps = 2/45 (4%)

Query: 105 ECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK-TCPVCR 148
           EC +CL  F++  +L  L  C HVFHQ CI +WL   +  CPVCR
Sbjct: 617 ECVVCLENFENGCLLMGLP-CGHVFHQNCIVMWLAGGRHCCPVCR 660


>R103_MOUSE (Q9R1W3) RING finger protein 103 (Zinc finger protein
           103) (Zfp-103) (KF-1) (mKF-1)
          Length = 683

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 22/45 (48%), Positives = 28/45 (61%), Gaps = 2/45 (4%)

Query: 105 ECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHK-TCPVCR 148
           EC +CL  F++  +L  L  C HVFHQ CI +WL   +  CPVCR
Sbjct: 618 ECVVCLENFENGCLLMGLP-CGHVFHQNCIVMWLAGGRHCCPVCR 661


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.319    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,354,846
Number of Sequences: 164201
Number of extensions: 1714292
Number of successful extensions: 6762
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 6406
Number of HSP's gapped (non-prelim): 247
length of query: 306
length of database: 59,974,054
effective HSP length: 110
effective length of query: 196
effective length of database: 41,911,944
effective search space: 8214741024
effective search space used: 8214741024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)


Medicago: description of AC126787.10