BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126786.2 - phase: 0
(161 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MASY_STRCL (Q9ZH77) Malate synthase (EC 2.3.3.9) 33 0.21
BAP1_HUMAN (Q96QZ7) BAI1-associated protein 1 (BAP-1) (Membrane ... 33 0.28
ORC4_SCHPO (Q9Y794) Origin recognition complex subunit 4 30 2.4
BACH_HUMAN (O00154) Cytosolic acyl coenzyme A thioester hydrolas... 30 3.1
COX2_BREAN (P43369) Cytochrome c oxidase polypeptide II (EC 1.9.... 29 4.0
COX2_DEKBR (P43374) Cytochrome c oxidase polypeptide II (EC 1.9.... 29 5.3
TERT_SCHPO (O13339) Telomerase reverse transcriptase (EC 2.7.7.-... 28 6.9
RL23_YERPE (P11254) 50S ribosomal protein L23 28 6.9
RL23_YEREN (P41278) 50S ribosomal protein L23 28 6.9
RL13_SCHPO (O74175) 60S ribosomal protein L13 28 6.9
BACH_RAT (Q64559) Cytosolic acyl coenzyme A thioester hydrolase ... 28 6.9
BACH_MOUSE (Q91V12) Cytosolic acyl coenzyme A thioester hydrolas... 28 6.9
PKSM_BACSU (P40872) Putative polyketide synthase pksM 28 9.0
GPMI_HELHP (Q7VGZ8) 2,3-bisphosphoglycerate-independent phosphog... 28 9.0
ARLY_YERPE (Q8ZA88) Argininosuccinate lyase (EC 4.3.2.1) (Argino... 28 9.0
>MASY_STRCL (Q9ZH77) Malate synthase (EC 2.3.3.9)
Length = 541
Score = 33.5 bits (75), Expect = 0.21
Identities = 22/78 (28%), Positives = 36/78 (45%), Gaps = 4/78 (5%)
Query: 42 EEQAVHQRRRSRAYQWKRPTVFLKEGESVPPDVDPDTIRWIPANHPFATTSTDIGEDFAH 101
E+ A + RS+ +QW V L+ GE V P + +R + A A T GE++A
Sbjct: 453 EDAATAEISRSQIWQWINAGVVLENGERVTPAL----VRTLAAGELGALRETLGGEEYAA 508
Query: 102 KNVSQKHGVPFRIQAEHE 119
+ H + R+ + E
Sbjct: 509 GRWQEAHDLLLRVALDEE 526
>BAP1_HUMAN (Q96QZ7) BAI1-associated protein 1 (BAP-1) (Membrane
associated guanylate kinase inverted-1) (MAGI-1)
(Atrophin-1 interacting protein 3) (AIP3) (WW
domain-containing protein 3) (WWP3) (Trinucleotide
repeat-containing gene 19 protein)
Length = 1491
Score = 33.1 bits (74), Expect = 0.28
Identities = 23/78 (29%), Positives = 33/78 (41%), Gaps = 6/78 (7%)
Query: 26 EMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQW-----KRPTVFLKEGESVPPDVDPDTIR 80
E CGK+ R+ L + + SRA + +R +FLK G+ P+ DP + R
Sbjct: 1188 ERCGKM-RIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGDGSVPEYDPSSDR 1246
Query: 81 WIPANHPFATTSTDIGED 98
PA P G D
Sbjct: 1247 HGPATGPQGVPEVRAGPD 1264
>ORC4_SCHPO (Q9Y794) Origin recognition complex subunit 4
Length = 972
Score = 30.0 bits (66), Expect = 2.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 20 KSKSSVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRPTVFLKEGESV 70
KS + +CGK + P+ +EQ ++ YQW R T+ L EG SV
Sbjct: 537 KSTIAARLCGKSH--IPLVGHMDEQ-------TKLYQWVRQTIVLGEGNSV 578
>BACH_HUMAN (O00154) Cytosolic acyl coenzyme A thioester hydrolase
(EC 3.1.2.2) (Long chain acyl-CoA thioester hydrolase)
(CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase)
Length = 380
Score = 29.6 bits (65), Expect = 3.1
Identities = 15/54 (27%), Positives = 29/54 (52%)
Query: 24 SVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRPTVFLKEGESVPPDVDPD 77
S++ KV + PV +++EQ R+R A + +R + G+ V P ++P+
Sbjct: 166 SLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPE 219
>COX2_BREAN (P43369) Cytochrome c oxidase polypeptide II (EC
1.9.3.1)
Length = 243
Score = 29.3 bits (64), Expect = 4.0
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 60 PTVFLKEGESVPPDVDPDTIRWIPANHPFATTSTDIGEDFAHKNVSQK-HGVPFRIQAEH 118
P L+EG+ DVD + + + F T+ D+ DFA ++ K VP R+
Sbjct: 141 PEDLLEEGQLRQLDVDSPMVCPVDTHMRFMVTAADVMHDFAMPSLGIKIDAVPGRLNQTS 200
Query: 119 EALQRK 124
+QR+
Sbjct: 201 ALIQRE 206
>COX2_DEKBR (P43374) Cytochrome c oxidase polypeptide II (EC
1.9.3.1)
Length = 245
Score = 28.9 bits (63), Expect = 5.3
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 60 PTVFLKEGESVPPDVDPDTIRWIPANHPFATTSTDIGEDFAHKNVSQK-HGVPFRIQAEH 118
P L+EG+ DVD + + + F T+ D+ DFA ++ K VP R+
Sbjct: 143 PEDLLEEGQLRQLDVDSPIVCPVDTHMRFIVTAADVIHDFAMPSLGIKIDAVPGRLNQTS 202
Query: 119 EALQRK 124
+QR+
Sbjct: 203 ALIQRE 208
>TERT_SCHPO (O13339) Telomerase reverse transcriptase (EC 2.7.7.-)
(Telomerase catalytic subunit)
Length = 988
Score = 28.5 bits (62), Expect = 6.9
Identities = 14/43 (32%), Positives = 23/43 (52%)
Query: 104 VSQKHGVPFRIQAEHEALQRKLEALQNVSLSRIRNFNSPMFDT 146
VSQ VP R+ + +++ + L +SLS++ N P DT
Sbjct: 285 VSQSTVVPKRLLKVYPLIEQTAKRLHRISLSKVYNHYCPYIDT 327
>RL23_YERPE (P11254) 50S ribosomal protein L23
Length = 100
Score = 28.5 bits (62), Expect = 6.9
Identities = 18/63 (28%), Positives = 31/63 (48%), Gaps = 7/63 (11%)
Query: 15 LVKVSKSKSSVEMCGKVYRLAPVT-------LTQEEQAVHQRRRSRAYQWKRPTVFLKEG 67
++KV+K + E+ V +L V L + + H +R R WK+ V LKEG
Sbjct: 31 VLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKEG 90
Query: 68 ESV 70
+++
Sbjct: 91 QNL 93
>RL23_YEREN (P41278) 50S ribosomal protein L23
Length = 100
Score = 28.5 bits (62), Expect = 6.9
Identities = 18/63 (28%), Positives = 31/63 (48%), Gaps = 7/63 (11%)
Query: 15 LVKVSKSKSSVEMCGKVYRLAPVT-------LTQEEQAVHQRRRSRAYQWKRPTVFLKEG 67
++KV+K + E+ V +L V L + + H +R R WK+ V LKEG
Sbjct: 31 VLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKEG 90
Query: 68 ESV 70
+++
Sbjct: 91 QNL 93
>RL13_SCHPO (O74175) 60S ribosomal protein L13
Length = 208
Score = 28.5 bits (62), Expect = 6.9
Identities = 24/86 (27%), Positives = 40/86 (45%), Gaps = 8/86 (9%)
Query: 50 RRSRAYQWKRPTVFLKEGESVPPDVDPDTIRW---IPANHPFATTSTDIGEDFAHKNVSQ 106
RR +A Q K + + E++ P V P TIR+ + A F T ++ + V+
Sbjct: 34 RRRQARQTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAGRGF--TLEELKAAGVSRRVAS 91
Query: 107 KHGVPF---RIQAEHEALQRKLEALQ 129
G+P R E+LQR +E ++
Sbjct: 92 TIGIPVDHRRRNRSEESLQRNVERIK 117
>BACH_RAT (Q64559) Cytosolic acyl coenzyme A thioester hydrolase (EC
3.1.2.2) (Long chain acyl-CoA thioester hydrolase)
(CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase) (ACT)
(CTE-IIb) (LACH1) (MTE-II) (ACH1)
Length = 338
Score = 28.5 bits (62), Expect = 6.9
Identities = 14/54 (25%), Positives = 28/54 (50%)
Query: 24 SVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRPTVFLKEGESVPPDVDPD 77
S++ KV + P+ ++EQ R+R A + +R + G+ V P ++P+
Sbjct: 124 SLKNVDKVLEVPPIVYLRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPILNPE 177
>BACH_MOUSE (Q91V12) Cytosolic acyl coenzyme A thioester hydrolase
(EC 3.1.2.2) (Long chain acyl-CoA thioester hydrolase)
(CTE-II) (CTE-IIa) (Brain acyl-CoA hydrolase)
Length = 381
Score = 28.5 bits (62), Expect = 6.9
Identities = 14/54 (25%), Positives = 28/54 (50%)
Query: 24 SVEMCGKVYRLAPVTLTQEEQAVHQRRRSRAYQWKRPTVFLKEGESVPPDVDPD 77
S++ KV + P+ ++EQ R+R A + +R + G+ V P ++P+
Sbjct: 167 SLKNVDKVLEVPPIVYLRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPE 220
>PKSM_BACSU (P40872) Putative polyketide synthase pksM
Length = 4262
Score = 28.1 bits (61), Expect = 9.0
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 2/44 (4%)
Query: 83 PANHPFATTSTDIGEDFAHKNVS--QKHGVPFRIQAEHEALQRK 124
P NH FA + +G +A++N Q+ +P+R + L RK
Sbjct: 1479 PVNHMFALPADRLGHAWAYRNQQWHQQQLIPYRSSLSGDTLYRK 1522
>GPMI_HELHP (Q7VGZ8) 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) (BPG-independent PGAM) (iPGM)
Length = 490
Score = 28.1 bits (61), Expect = 9.0
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 1 ISRNLKYEDPFDNP-LVKVSKSKSSVEMCG 29
ISR ++Y++ DNP LV+V++ + V +CG
Sbjct: 79 ISRAIEYDEIKDNPALVEVTQQSAVVHLCG 108
>ARLY_YERPE (Q8ZA88) Argininosuccinate lyase (EC 4.3.2.1)
(Arginosuccinase) (ASAL)
Length = 457
Score = 28.1 bits (61), Expect = 9.0
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 109 GVPFRIQAEH-------EALQRKLEALQNVSLSRIRNFNSPMFDTVLEVVVQMPCL 157
GVPFR +A H EA+ R+ +AL+ ++LS ++ F+S + D V ++ CL
Sbjct: 378 GVPFR-EAHHIVGEAVVEAI-RQGKALEALALSDLQQFSSVIGDDVYPILALQSCL 431
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,363,837
Number of Sequences: 164201
Number of extensions: 683679
Number of successful extensions: 1897
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1891
Number of HSP's gapped (non-prelim): 16
length of query: 161
length of database: 59,974,054
effective HSP length: 101
effective length of query: 60
effective length of database: 43,389,753
effective search space: 2603385180
effective search space used: 2603385180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC126786.2