BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126786.10 - phase: 0 /pseudo
(1308 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 142 8e-33
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 74 2e-12
SLPH_BRECH (P38538) Surface layer protein precursor (Hexagonal w... 37 0.46
MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC ... 34 2.3
LON_MYCPN (P78025) ATP-dependent protease La (EC 3.4.21.53) 34 2.3
SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre... 33 5.1
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 142 bits (357), Expect = 8e-33
Identities = 84/238 (35%), Positives = 133/238 (55%), Gaps = 5/238 (2%)
Query: 3 GSK*DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVSA 62
G K ++ KF G N F W+ +MR +LIQQ + L +++ + + +L+++A SA
Sbjct: 3 GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62
Query: 63 IIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQL 122
I + L D V+ + E TA +W +L+SLYM+K+L ++ LK+QLY M E + L
Sbjct: 63 IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122
Query: 123 TEFNKIIDNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRT 182
FN +I LAN+ V +E+EDKA+ LL +LP S++N T+L+GK TI L++V +AL
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKT-TIELKDVTSALLL 181
Query: 183 KELTKFKELKVDDSGEGL-NVSRGRSQNRGKGKGKNSRSKSRSKGDGNKTQYKCFICH 239
E + K ++ G+ L RGRS R S ++ +SK C+ C+
Sbjct: 182 NEKMR---KKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCN 236
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 74.3 bits (181), Expect = 2e-12
Identities = 62/232 (26%), Positives = 106/232 (44%), Gaps = 16/232 (6%)
Query: 14 GNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAV----SAIIMCLGD 69
G + +WK ++RA+L +Q ++ + G L P E + KA S II L D
Sbjct: 13 GEKYAIWKFRIRALLAEQDVLKVVDG-------LMPNEVDDSWKKAERCAKSTIIEYLSD 65
Query: 70 KVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKII 129
L + + TA + LD++Y KSLA + L+++L ++ ++ F+++I
Sbjct: 66 SFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELI 125
Query: 130 DNLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQAALRTKELTKFK 189
L +E+ DK HLL LP ++ + E +TL V+ L +E+ K K
Sbjct: 126 SELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEI-KIK 184
Query: 190 ELKVDDSGEGLNVSRGRSQNRGKG---KGKNSRSKSRSKGDGNKTQYKCFIC 238
D S + +N + N K K + ++ K KG+ +K + KC C
Sbjct: 185 NDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGN-SKYKVKCHHC 235
>SLPH_BRECH (P38538) Surface layer protein precursor (Hexagonal wall
protein) (HWP)
Length = 1116
Score = 36.6 bits (83), Expect = 0.46
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 12/155 (7%)
Query: 110 YRMVESKPIMEQLTEFNKIIDNLANI---------DVNLEDEDKALHLLCALPRSFENFK 160
YR+ E I T FN +D L+ I V L D ++ +L ++ +
Sbjct: 381 YRLTEDTKITYNFTRFNDPVDALSKIYKDNDTFGVKVVLNDNNEVAYLHIIDDQTIDKSV 440
Query: 161 DTMLYGKEGTITLEEVQAALRTKELTKFKELKVDDSGEGLNVSRGRSQNRGKGKGKNSRS 220
+ YG + ++ + + + +KF +L+ D G+ V Q G K S
Sbjct: 441 KGVKYGSKVISKIDADKKKITNLDNSKFSDLEDQDEGKDFLVFLD-GQPAKLGDLKESDV 499
Query: 221 KSRSKGDGNKTQYKCFICHNLVTSR--RIIRRERT 253
S DG+K +Y F N+ + +++ R +T
Sbjct: 500 YSVYYADGDKDKYLVFANRNVAEGKVEKVVSRNKT 534
>MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC LH)
[Contains: Micronuclear linker histone-alpha;
Micronuclear linker histone-beta; Micronuclear linker
histone-delta; Micronuclear linker histone-gamma]
Length = 633
Score = 34.3 bits (77), Expect = 2.3
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 181 RTKELTKFKELKVDDSGEGLNVSRGRSQNRGKGK----GKNSRSKSRSKGDGNKTQ 232
RTK+ K SG + S+G+S ++ KGK GKNS+S+S SK N Q
Sbjct: 400 RTKKANNKSASKASKSG---SKSKGKSASKSKGKSSSKGKNSKSRSASKPKSNAAQ 452
>LON_MYCPN (P78025) ATP-dependent protease La (EC 3.4.21.53)
Length = 795
Score = 34.3 bits (77), Expect = 2.3
Identities = 24/101 (23%), Positives = 49/101 (47%), Gaps = 2/101 (1%)
Query: 72 LREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQLYFYRMVESKPIMEQLTEFNKIIDN 131
+ E +R S ++K+D+ K + Q +QQ FY + + I E++ +K D
Sbjct: 216 ISEEARAKQRESEFDKIDNRITRK--VNEQLSRQQRDFYLREKLRVIREEIGMTSKKEDE 273
Query: 132 LANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTIT 172
++NI LE+ H+ + ++F+++ +E T+T
Sbjct: 274 VSNIRKKLEENPYPEHIKKRILSELDHFENSSSSSQESTLT 314
>SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4
(Pre-mRNA splicing factor SRP75) (SRP001LB)
Length = 494
Score = 33.1 bits (74), Expect = 5.1
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 181 RTKELTKFKELKVDDSGEGLNVSRGRSQNRGKGKGKNSRSKSRSKG 226
++K ++ +E +V++ G +VSRGRSQ + + SRS+SRSKG
Sbjct: 297 KSKSRSRSQERRVEEEKRG-SVSRGRSQEKSL---RQSRSRSRSKG 338
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.360 0.161 0.601
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,432,617
Number of Sequences: 164201
Number of extensions: 4938117
Number of successful extensions: 20080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 20053
Number of HSP's gapped (non-prelim): 27
length of query: 1308
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1186
effective length of database: 39,941,532
effective search space: 47370656952
effective search space used: 47370656952
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC126786.10