BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126784.6 - phase: 0
(135 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YDEF_SCHPO (Q10448) Hypothetical protein C12B10.15c in chromosome I 56 3e-08
MATK_PSEMZ (Q9MV48) Maturase K (Intron maturase) 32 0.39
DUT_TROWT (Q83G43) Deoxyuridine 5'-triphosphate nucleotidohydrol... 31 0.87
DUT_TROW8 (Q83I22) Deoxyuridine 5'-triphosphate nucleotidohydrol... 31 0.87
RL9_CHLMU (Q46398) 50S ribosomal protein L9 30 1.5
REQ2_XENLA (Q9W636) Zinc-finger protein ubi-d4 2 (Requiem) (xReq... 30 1.5
KITH_CBEPV (Q05879) Thymidine kinase (EC 2.7.1.21) 30 1.9
GATA_STAAU (Q9RF07) Glutamyl-tRNA(Gln) amidotransferase subunit ... 30 1.9
PM34_HUMAN (O43808) Peroxisomal membrane protein PMP34 (34 kDa p... 29 2.5
RIP2_CHICK (Q8QFX1) RIM binding protein 2 (RIM-BP2) 29 3.3
MATK_PICSI (Q8MC55) Maturase K (Intron maturase) 29 3.3
MATK_PICRU (O63071) Maturase K (Intron maturase) 29 3.3
MATK_PICMA (O63072) Maturase K (Intron maturase) 29 3.3
MATK_PICGL (O63070) Maturase K (Intron maturase) 29 3.3
BASI_HUMAN (P35613) Basigin precursor (CD147 antigen) (Leukocyte... 28 4.3
BASI_BOVIN (Q865R3) Basigin precursor (CD147 antigen) (EMMPRIN) ... 28 4.3
NADD_THEMA (Q9WXV2) Probable nicotinate-nucleotide adenylyltrans... 28 5.6
MATK_TSUCA (Q9MV49) Maturase K (Intron maturase) 28 5.6
MATK_ABIHL (Q9MV46) Maturase K (Intron maturase) 28 5.6
MATK_ABIFI (Q9MV51) Maturase K (Intron maturase) 28 5.6
>YDEF_SCHPO (Q10448) Hypothetical protein C12B10.15c in chromosome I
Length = 147
Score = 55.8 bits (133), Expect = 3e-08
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 9 IDLKRDGIEDLSGRVHLLPCCIKHDGPTEVSQYFKPKPTGVVGEDGLPLQQSHFRGRLLE 68
+ L++ G +L + LLPC I +DGP V +YF K + + RGR L
Sbjct: 8 VKLEQAGSSNLE-KASLLPCHISYDGPAPVFEYFHDKIQ--ISNNTHSKTTVCLRGRELN 64
Query: 69 GTTLPLPHNYSGFVL----GKKNSVES-----SNSWETSVTFNDITYWNHDSVPSNNDDF 119
G L LP NY+G V+ G +N S ++W + TF + WN D++ S+ D
Sbjct: 65 GEELDLPENYTGQVVLCDDGLENDETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQ 124
Query: 120 SR--AFHWIPVAEAV 132
+ WI A V
Sbjct: 125 WKRGVLEWIQFASKV 139
>MATK_PSEMZ (Q9MV48) Maturase K (Intron maturase)
Length = 515
Score = 32.0 bits (71), Expect = 0.39
Identities = 23/70 (32%), Positives = 34/70 (47%), Gaps = 6/70 (8%)
Query: 50 VGEDGLPL---QQSHFRGRLLEGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTFNDITY 106
V D PL +S + +LEG TL L +S + KNSVE N W++ + + I
Sbjct: 78 VNRDPNPLVDRNKSSYSESVLEGLTLVLEVPFS---IRSKNSVEGINEWKSFRSIHSIFP 134
Query: 107 WNHDSVPSNN 116
+ D P +N
Sbjct: 135 FLEDKFPHSN 144
>DUT_TROWT (Q83G43) Deoxyuridine 5'-triphosphate nucleotidohydrolase
(EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
Length = 146
Score = 30.8 bits (68), Expect = 0.87
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 51 GEDGLPLQQSHF-------RGRLLEGTTLPLPHNYSGFVLGKKN-SVESSNSWETSVTFN 102
G+ G LQ SH R + G + LP Y+GF++ + + E+ + S
Sbjct: 19 GDAGFDLQSSHTAVIQPRCRQVVKTGIAIALPDGYAGFIMPRSGLASENGITLVNSPGVI 78
Query: 103 DITYWNHDSVPSNNDDFSRAFH 124
D Y SV N D +AFH
Sbjct: 79 DAGYRGEISVVLINTDLHQAFH 100
>DUT_TROW8 (Q83I22) Deoxyuridine 5'-triphosphate nucleotidohydrolase
(EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
Length = 146
Score = 30.8 bits (68), Expect = 0.87
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 51 GEDGLPLQQSHF-------RGRLLEGTTLPLPHNYSGFVLGKKN-SVESSNSWETSVTFN 102
G+ G LQ SH R + G + LP Y+GF++ + + E+ + S
Sbjct: 19 GDAGFDLQSSHTAVIQPRCRQVVKTGIAIALPDGYAGFIMPRSGLASENGITLVNSPGVI 78
Query: 103 DITYWNHDSVPSNNDDFSRAFH 124
D Y SV N D +AFH
Sbjct: 79 DAGYRGEISVVLINTDLHQAFH 100
>RL9_CHLMU (Q46398) 50S ribosomal protein L9
Length = 167
Score = 30.0 bits (66), Expect = 1.5
Identities = 27/76 (35%), Positives = 32/76 (41%), Gaps = 6/76 (7%)
Query: 35 PTEVSQYFKPKPTGVVGEDG-LPLQQSHFRGRLLEGT-----TLPLPHNYSGFVLGKKNS 88
P V Y PK VV G L LQ RLL+ +L L VL +
Sbjct: 25 PGYVRNYLLPKGKAVVASAGTLRLQAKLQEQRLLQAAADKEESLRLAETLRSLVLDFQVR 84
Query: 89 VESSNSWETSVTFNDI 104
V+S N+ SVT NDI
Sbjct: 85 VDSENNMYGSVTVNDI 100
>REQ2_XENLA (Q9W636) Zinc-finger protein ubi-d4 2 (Requiem) (xReq)
(Apoptosis response zinc finger protein) (Fragment)
Length = 366
Score = 30.0 bits (66), Expect = 1.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 72 LPLPHNYSGFVLGKKNSVESSNSWETSVTFNDITYWNHDS 111
L LP+NY F LG N+ + SN E V+ +D H S
Sbjct: 243 LALPNNYCDFCLGDSNTNKKSNQPEELVSCSDCGRSGHPS 282
>KITH_CBEPV (Q05879) Thymidine kinase (EC 2.7.1.21)
Length = 186
Score = 29.6 bits (65), Expect = 1.9
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 64 GRLLEGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTFNDITYWNHDSVPSNNDDF 119
G + G T L + + L KKN V S+S + +D NHD ++DDF
Sbjct: 8 GPMYSGKTTELIRRITRYKLCKKNCVIISHSIDNRCEEDDNILINHDGFKISHDDF 63
>GATA_STAAU (Q9RF07) Glutamyl-tRNA(Gln) amidotransferase subunit A
(EC 6.3.5.-) (Glu-ADT subunit A)
Length = 485
Score = 29.6 bits (65), Expect = 1.9
Identities = 17/59 (28%), Positives = 29/59 (48%), Gaps = 2/59 (3%)
Query: 66 LLEGTTLPLPHNYSGFVLGKKNSVE--SSNSWETSVTFNDITYWNHDSVPSNNDDFSRA 122
+ E T + HN + ++GK N E S ETS++ + ++H +VP + S A
Sbjct: 102 IYESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSISKKTVNPFDHKAVPGGSSGGSAA 160
>PM34_HUMAN (O43808) Peroxisomal membrane protein PMP34 (34 kDa
peroxisomal membrane protein) (Solute carrier family 25,
member 17)
Length = 307
Score = 29.3 bits (64), Expect = 2.5
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 80 GFVLGKKNSVESSNSW--ETSVTFNDITYWNHDSVPSNNDDFSRAFHWIPVAEAVSCL 135
GFV G N + ++ W T + + N D VP+N AFH I E +S L
Sbjct: 108 GFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYKGIIDAFHQIIRDEGISAL 165
>RIP2_CHICK (Q8QFX1) RIM binding protein 2 (RIM-BP2)
Length = 1325
Score = 28.9 bits (63), Expect = 3.3
Identities = 27/94 (28%), Positives = 39/94 (40%), Gaps = 20/94 (21%)
Query: 20 SGRVHLLPCCIKH-----DGPTEVSQYFKPKPTGV-------VGEDGLPLQQSHFRGRLL 67
SG+VHL C ++ DGP E + P G + EDG + G LL
Sbjct: 185 SGKVHL--CIARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGF------YEGELL 236
Query: 68 EGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTF 101
+G +P N+ FV + + S+ S E F
Sbjct: 237 DGQRGLVPSNFVDFVQDNETRLSSTLSSEQDQNF 270
>MATK_PICSI (Q8MC55) Maturase K (Intron maturase)
Length = 515
Score = 28.9 bits (63), Expect = 3.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 58 QQSHFRGRLLEGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTFNDITYWNHDSVPSNN 116
++S + +LEG TL L +S + K SVE N W++ + + I + D P +N
Sbjct: 89 KKSSYSESVLEGLTLVLEVPFS---IRSKYSVEGMNEWKSFRSIHSIFPFLEDKFPHSN 144
>MATK_PICRU (O63071) Maturase K (Intron maturase)
Length = 515
Score = 28.9 bits (63), Expect = 3.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 58 QQSHFRGRLLEGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTFNDITYWNHDSVPSNN 116
++S + +LEG TL L +S + K SVE N W++ + + I + D P +N
Sbjct: 89 KKSSYSESVLEGLTLVLEVPFS---IRSKYSVEGMNEWKSFRSIHSIFPFLEDKFPHSN 144
>MATK_PICMA (O63072) Maturase K (Intron maturase)
Length = 515
Score = 28.9 bits (63), Expect = 3.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 58 QQSHFRGRLLEGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTFNDITYWNHDSVPSNN 116
++S + +LEG TL L +S + K SVE N W++ + + I + D P +N
Sbjct: 89 KKSSYSESVLEGLTLVLEVPFS---IRSKYSVEGMNEWKSFRSIHSIFPFLEDKFPHSN 144
>MATK_PICGL (O63070) Maturase K (Intron maturase)
Length = 515
Score = 28.9 bits (63), Expect = 3.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 58 QQSHFRGRLLEGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTFNDITYWNHDSVPSNN 116
++S + +LEG TL L +S + K SVE N W++ + + I + D P +N
Sbjct: 89 KKSSYSESVLEGLTLVLEVPFS---IRSKYSVEGMNEWKSFRSIHSIFPFLEDKFPHSN 144
>BASI_HUMAN (P35613) Basigin precursor (CD147 antigen) (Leukocyte
activation antigen M6) (Collagenase stimulatory factor)
(Extracellular matrix metalloproteinase inducer)
(EMMPRIN) (5F7) (Tumor cell-derived collagenase
stimulatory factor) (TCSF) (OK blood
Length = 385
Score = 28.5 bits (62), Expect = 4.3
Identities = 18/48 (37%), Positives = 29/48 (59%), Gaps = 2/48 (4%)
Query: 16 IEDLSGRVHLLPCCIKHDGPTEVSQYFKPKPTGVVGEDGLPLQQSHFR 63
+EDL ++ LL C + +D TEV+ + K V+ ED LP Q++ F+
Sbjct: 146 VEDLGSKI-LLTCSL-NDSATEVTGHRWLKGGVVLKEDALPGQKTEFK 191
>BASI_BOVIN (Q865R3) Basigin precursor (CD147 antigen) (EMMPRIN)
(Fragment)
Length = 205
Score = 28.5 bits (62), Expect = 4.3
Identities = 18/48 (37%), Positives = 29/48 (59%), Gaps = 2/48 (4%)
Query: 16 IEDLSGRVHLLPCCIKHDGPTEVSQYFKPKPTGVVGEDGLPLQQSHFR 63
+EDL ++ LL C + +D TEV+ + K V+ ED LP Q++ F+
Sbjct: 30 VEDLGSKI-LLTCSL-NDSATEVTGHRWLKGGVVLKEDALPGQKTEFK 75
>NADD_THEMA (Q9WXV2) Probable nicotinate-nucleotide
adenylyltransferase (EC 2.7.7.18) (Deamido-NAD(+)
pyrophosphorylase) (Deamido-NAD(+) diphosphorylase)
(Nicotinate mononucleotide adenylyltransferase) (NaMN
adenylyltransferase)
Length = 205
Score = 28.1 bits (61), Expect = 5.6
Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Query: 39 SQYFKPKPTGVVGEDGLPLQQSHFRGR-LLEGTTLPLPHNYSG 80
S+ +K KP +VGED L + +R R +L+ +TL + Y G
Sbjct: 103 SEIYKTKPFFIVGEDALSYFEKWYRYRDILKKSTLVVYPRYCG 145
>MATK_TSUCA (Q9MV49) Maturase K (Intron maturase)
Length = 514
Score = 28.1 bits (61), Expect = 5.6
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 59 QSHFRGRLLEGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTFNDITYWNHDSVPSNN 116
+S + +LEG TL L +S + K SVE N W++ + + I + D P +N
Sbjct: 90 KSSYSESVLEGLTLVLEVPFS---IRSKYSVEGINEWKSFRSIHSIFPFLEDKFPHSN 144
>MATK_ABIHL (Q9MV46) Maturase K (Intron maturase)
Length = 509
Score = 28.1 bits (61), Expect = 5.6
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 59 QSHFRGRLLEGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTFNDITYWNHDSVPSNN 116
+S + +LEG TL L +S + K SVE N W++ + + I + D P +N
Sbjct: 90 KSFYYESVLEGLTLVLEVPFS---IRSKYSVEGMNEWKSFRSIHSIFPFLEDKFPHSN 144
>MATK_ABIFI (Q9MV51) Maturase K (Intron maturase)
Length = 509
Score = 28.1 bits (61), Expect = 5.6
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 59 QSHFRGRLLEGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTFNDITYWNHDSVPSNN 116
+S + +LEG TL L +S + K SVE N W++ + + I + D P +N
Sbjct: 90 KSFYYESVLEGLTLVLEVPFS---IRSKYSVEGMNEWKSFRSIHSIFPFLEDKFPHSN 144
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.316 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,481,729
Number of Sequences: 164201
Number of extensions: 799365
Number of successful extensions: 1532
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1526
Number of HSP's gapped (non-prelim): 25
length of query: 135
length of database: 59,974,054
effective HSP length: 98
effective length of query: 37
effective length of database: 43,882,356
effective search space: 1623647172
effective search space used: 1623647172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 59 (27.3 bits)
Medicago: description of AC126784.6