BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126782.2 - phase: 0 /pseudo
         (912 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YCX3_GUITH (O78431) Hypothetical 30.1 kDa protein (ORF252)             33  2.6
SYG_CHLTR (Q46371) Glycyl-tRNA synthetase (EC 6.1.1.14) (GlyRS) ...    32  7.7

>YCX3_GUITH (O78431) Hypothetical 30.1 kDa protein (ORF252)
          Length = 252

 Score = 33.5 bits (75), Expect = 2.6
 Identities = 33/153 (21%), Positives = 66/153 (42%), Gaps = 18/153 (11%)

Query: 244 KYTNFNLVPQNVCFLRIRQIIEAINV*IYCQIKLLFVVMSYLMKILSHMQSCTFLNL--- 300
           ++ N+ L+ +++ F      + + N+  +   KL       L +IL H    + +++   
Sbjct: 93  RHNNYELLTKSINFKNYNLFLSSANLITHEDEKLFIWFFHILSEILIHKHKSSTISVKLL 152

Query: 301 ----IHTLS*TMSCPLILYN-------I*WTKPKLAH---LILNWLISQTKSLLLVQTHQ 346
               +H +  T+   L+L N       I  +  K+ H   +  N+       L+L + + 
Sbjct: 153 SIVGVHLIVKTLLIFLLLINNQSVVNSIFLSDSKIYHPQFINFNFWWQNLNQLVLRRIYS 212

Query: 347 ISPHLHNLTPLVPSNKIFLPYFNQLYKLTQNLS 379
           + P       ++ +N +FLPYFN  Y L  NL+
Sbjct: 213 LYPIYVIKNNVLTTNYVFLPYFNS-YLLQSNLT 244


>SYG_CHLTR (Q46371) Glycyl-tRNA synthetase (EC 6.1.1.14) (GlyRS)
           [Includes: Glycyl-tRNA synthetase alpha chain
           (Glycine--tRNA ligase alpha chain); Glycyl-tRNA
           synthetase beta chain (Glycine--tRNA ligase beta chain)]
          Length = 1003

 Score = 32.0 bits (71), Expect = 7.7
 Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 6/65 (9%)

Query: 558 LLELGVSDLPTTCHLLVFLKANVITLFSCTRKTLIWH-IFYSRLMILFSPRPQMICDNLS 616
           LLE+G  +LP T     F+   +  L S  +K L  H I Y  L +L +PR   +C    
Sbjct: 316 LLEIGSEELPAT-----FVPTGIQQLESLAKKLLADHGIAYKHLEVLGTPRRLALCIEGL 370

Query: 617 SHYSV 621
           SH ++
Sbjct: 371 SHVTI 375


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.346    0.153    0.515 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,710,622
Number of Sequences: 164201
Number of extensions: 3689610
Number of successful extensions: 12831
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12829
Number of HSP's gapped (non-prelim): 4
length of query: 912
length of database: 59,974,054
effective HSP length: 119
effective length of query: 793
effective length of database: 40,434,135
effective search space: 32064269055
effective search space used: 32064269055
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 71 (32.0 bits)