BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126782.12 + phase: 0
(116 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPG1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase regulat... 40 0.001
ABRA_PLAFC (P22620) 101 kDa malaria antigen (P101) (Acidic basic... 36 0.018
PPID_BUCAP (Q8K987) Peptidyl-prolyl cis-trans isomerase D (EC 5.... 35 0.031
MAPB_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [... 35 0.031
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 35 0.031
DBNL_RAT (Q9JHL4) Drebrin-like protein (SH3 domain-containing pr... 35 0.031
TOLA_HAEIN (P44678) TolA protein 35 0.040
PAFA_CHICK (Q90678) Platelet-activating factor acetylhydrolase p... 35 0.040
Y5G8_ENCCU (Q8STA9) Hypothetical protein ECU05_1680/ECU11_0050 34 0.052
IF2_AQUAE (O67825) Translation initiation factor IF-2 34 0.068
MYHA_RAT (Q9JLT0) Myosin heavy chain, nonmuscle type B (Cellular... 33 0.089
IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B ... 33 0.089
USO1_YEAST (P25386) Intracellular protein transport protein USO1 33 0.12
MAPB_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (... 33 0.12
VIT_ANTGR (Q05808) Vitellogenin precursor [Contains: YP47; YP160] 33 0.15
TOP1_XENLA (P41512) DNA topoisomerase I (EC 5.99.1.2) 33 0.15
NEUR_DROME (P29503) Neuralized protein 33 0.15
NEUM_XENLA (P55860) Neuromodulin (Axonal membrane protein GAP-43... 33 0.15
MYHA_BOVIN (Q27991) Myosin heavy chain, nonmuscle type B (Cellul... 33 0.15
KF3B_MOUSE (Q61771) Kinesin-like protein KIF3B (Microtubule plus... 33 0.15
>RPG1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase
regulator-interacting protein 1 (RPGR-interacting
protein 1)
Length = 1331
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/72 (31%), Positives = 46/72 (62%), Gaps = 1/72 (1%)
Query: 30 EAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYLKL 89
EA K +G +K ++ G EEV++E V+ +E +E+E E +KE + ++E+ R ++ + +
Sbjct: 903 EAEKPEGEEKEEE-GGEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEK 961
Query: 90 SSEEHLDDRKKE 101
EE D++++E
Sbjct: 962 EEEEEEDEKEEE 973
Score = 32.7 bits (73), Expect = 0.15
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 28 GREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYL 87
G E K++ +++ ++ EE KE + +E +E+E E KE K ++E+ K+ +
Sbjct: 917 GEEEVKEEEVEEEEEEEEEEEEVKEEKEEEEEEEREEEEEKEEEKEEEEEEDEKEEEEEE 976
Query: 88 KLSSEEHLDDRKKEHL 103
+ EE +D K+ L
Sbjct: 977 EEEEEEEEEDENKDVL 992
>ABRA_PLAFC (P22620) 101 kDa malaria antigen (P101) (Acidic basic
repeat antigen)
Length = 743
Score = 35.8 bits (81), Expect = 0.018
Identities = 21/64 (32%), Positives = 38/64 (58%)
Query: 47 EEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVKH 106
EE EKE + KE KE+E + +E K ++EK + K+ K K EE ++ ++E + ++
Sbjct: 677 EEKEKEKEKEKEEKEKEEKEKEEKEKEKEEKEKEKEEKEEEKKEKEEEQEEEEEEIVPEN 736
Query: 107 IWTK 110
+ T+
Sbjct: 737 LTTE 740
Score = 28.5 bits (62), Expect = 2.9
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 47 EEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKE 101
EE+EK+ + E E++ L K ++EK + K+ + K E+ ++++KE
Sbjct: 649 EEMEKQVEAITKQIEAEVDALAPKNKEEEEKEKEKEKEKEEKEKEEKEKEEKEKE 703
Score = 27.3 bits (59), Expect = 6.4
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 42 DVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKE 101
+V L KE + ++ KE+E E ++ K ++EK + K+ K K EE ++++E
Sbjct: 665 EVDALAPKNKEEEEKEKEKEKEKEEKEKEEKEKEEKEKEKEEKEKEKEEKEEEKKEKEEE 724
>PPID_BUCAP (Q8K987) Peptidyl-prolyl cis-trans isomerase D (EC
5.2.1.8) (PPIase D) (Rotamase D)
Length = 621
Score = 35.0 bits (79), Expect = 0.031
Identities = 32/107 (29%), Positives = 52/107 (47%), Gaps = 22/107 (20%)
Query: 17 KDSVGSSAR-PMGREAAKKKGI----KKSKDVAGLEEV--------------EKEWVQFK 57
KDSV + P+ ++ KKG+ KK K +GL + +K + K
Sbjct: 421 KDSVPKELQNPILKKIIFKKGLLDRQKKLKSHSGLIVLNDHQSFLLSIKNFQKKRIKKLK 480
Query: 58 EIKEQEIEHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLV 104
+IK + LK V++ KN+LKK+ LK+ +E L KKE+++
Sbjct: 481 DIKRNIVNKLKYIKAVEKTKNKLKKILFQLKIGNEHIL---KKENII 524
>MAPB_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B)
[Contains: MAP1 light chain LC1]
Length = 2468
Score = 35.0 bits (79), Expect = 0.031
Identities = 31/97 (31%), Positives = 46/97 (46%), Gaps = 4/97 (4%)
Query: 12 SKRSHKDSVGSSARPMGREAAK--KKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKE 69
+K+ K + +P E K KK IKK + +EV+KE + KE + E KE
Sbjct: 661 AKKEDKTPIKKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKE 720
Query: 70 YTKVQQE-KNRLKKMKMYLKLSSEEHLDDRKKEHLVK 105
K ++E K +KK+ K SS L + KK +K
Sbjct: 721 VKKEEKEPKKEIKKLPKDAKKSSTP-LSEAKKPAALK 756
Score = 26.9 bits (58), Expect = 8.3
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 3/76 (3%)
Query: 26 PMGREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKM 85
P+ E A+K+ A + V+KE E K++E E K+ +++K +KK +
Sbjct: 615 PVKAEVAEKQATDVKPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEE- 673
Query: 86 YLKLSSEEHLDDRKKE 101
K EE + KKE
Sbjct: 674 --KPKKEEVKKEVKKE 687
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
Length = 678
Score = 35.0 bits (79), Expect = 0.031
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 4 NVGSGSSRSKRSHKDSVGSSARP------MGREAAKKKGIKKSKDVAGLEEVEKEWV--Q 55
+V S+ +K + K+++ + M + KK+ +K K++ E++EK+ +
Sbjct: 227 SVHETSNDTKDNDKENISEDKKEDHQQEEMLKTLDKKERKQKEKEMKEQEKIEKKKKKQE 286
Query: 56 FKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVKH 106
KE K+QE E K+ K + K + K+MK K+ E + K++ KH
Sbjct: 287 EKEKKKQEKERKKQEKK--ERKQKEKEMKKQKKIEKERKKKEEKEKKKKKH 335
Score = 26.9 bits (58), Expect = 8.3
Identities = 21/96 (21%), Positives = 42/96 (42%), Gaps = 5/96 (5%)
Query: 11 RSKRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEV-----EKEWVQFKEIKEQEIE 65
+ ++ KD V +++ + A I S D + V E + K+ KE++ +
Sbjct: 70 KEEKDEKDDVPTTSNDNLKNAHNNNEISSSTDPTNIINVNDKDNENSVDKKKDKKEKKHK 129
Query: 66 HLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKE 101
K+ K +++K K K ++H D+KK+
Sbjct: 130 KDKKEKKEKKDKKEKKDKKEKKHKKEKKHKKDKKKK 165
>DBNL_RAT (Q9JHL4) Drebrin-like protein (SH3 domain-containing
protein 7)
Length = 436
Score = 35.0 bits (79), Expect = 0.031
Identities = 25/97 (25%), Positives = 47/97 (47%), Gaps = 2/97 (2%)
Query: 5 VGSGSSRSKRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEI 64
V S + HK+S S + +G +A +K+ V+ ++ V K+ K KE+E
Sbjct: 132 VAKASGANYSFHKES--SCFQDVGPQAPVGSVYQKTNAVSEIKRVGKDNFWAKAEKEEEN 189
Query: 65 EHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKE 101
L+E + ++EK RL++ + +L + R +E
Sbjct: 190 RRLEEKRRAEEEKQRLEEERRERELQEAARREQRYQE 226
>TOLA_HAEIN (P44678) TolA protein
Length = 372
Score = 34.7 bits (78), Expect = 0.040
Identities = 32/107 (29%), Positives = 53/107 (48%), Gaps = 5/107 (4%)
Query: 1 MGGNVGSGSSRSKRSHKDSVGSSARPMGREAAKKKGI--KKSKDVAGLEEVEKEWVQFKE 58
MGG G G + G++A+ GR +KKG K+ + +EE E Q +E
Sbjct: 39 MGGGEGEGDVIG--AVIVDTGTAAQEWGRIQQQKKGQADKQKRPEPVVEEKPPEPNQ-EE 95
Query: 59 IKEQEIEHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVK 105
IK Q+ +E K QQE+ R +++K + + +E L+ +K+ K
Sbjct: 96 IKHQQEVQRQEELKRQQEQQRQQEIKKQQEQARQEALEKQKQAEEAK 142
>PAFA_CHICK (Q90678) Platelet-activating factor acetylhydrolase
precursor (EC 3.1.1.47) (PAF acetylhydrolase) (PAF
2-acylhydrolase) (LDL-associated phospholipase A2)
(LDL-PLA(2)) (2-acetyl-1-alkylglycerophosphocholine
esterase) (1-alkyl-2-acetylglyceropho
Length = 422
Score = 34.7 bits (78), Expect = 0.040
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 49 VEKEWVQFKEIKEQEIEHLKEYTKVQQEKNR-LKKMKMYLKLSSEEHL 95
VEKEW+ +++++ E E + +VQQ +K + + LK+SS E +
Sbjct: 191 VEKEWIYYRKLRAGEEERCLRHKQVQQRAQECIKALNLILKISSGEEV 238
>Y5G8_ENCCU (Q8STA9) Hypothetical protein ECU05_1680/ECU11_0050
Length = 612
Score = 34.3 bits (77), Expect = 0.052
Identities = 22/97 (22%), Positives = 48/97 (48%)
Query: 5 VGSGSSRSKRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEI 64
+G R + + V + + R +KK +K K+ +E EK + K+ KE++
Sbjct: 282 LGKKGDEIDRRYINKVANVVKERQRREMEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKK 341
Query: 65 EHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKE 101
E K+ + ++E+ + +K + + EE +++K+E
Sbjct: 342 EEKKKKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEE 378
Score = 28.9 bits (63), Expect = 2.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 29 REAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNR-LKKMKMYL 87
RE K+ + K D + K KE + +E+E +E K ++EK + +K K
Sbjct: 274 RELVKQMLLGKKGDEIDRRYINKVANVVKERQRREMEKKEEEKKKEEEKKKEEEKRKEEK 333
Query: 88 KLSSEEHLDDRKKE 101
K EE +++KK+
Sbjct: 334 KKKKEEKKEEKKKK 347
>IF2_AQUAE (O67825) Translation initiation factor IF-2
Length = 805
Score = 33.9 bits (76), Expect = 0.068
Identities = 26/93 (27%), Positives = 49/93 (51%), Gaps = 8/93 (8%)
Query: 13 KRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTK 72
++ ++ S + +E +KK +K K ++VEKE KE K + +E KE K
Sbjct: 117 EKKEEEKPKKSVEELIKEILEKKEKEKEK-----KKVEKER---KEEKVRVVEVKKEERK 168
Query: 73 VQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVK 105
++++ + ++ K +K+S +E RK EH V+
Sbjct: 169 EEKKEEKKEEEKPKIKMSKKEREIMRKLEHAVE 201
Score = 28.5 bits (62), Expect = 2.9
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 13 KRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTK 72
+ K+ V + E +KK +K ++V +EEV +E + E+ +EIE KE
Sbjct: 61 EEEEKEEVVTEQAQAPAEVEEKKEEEKKEEVI-VEEVVEE--KKPEVIVEEIEEKKE--- 114
Query: 73 VQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVKHI 107
++EK +K K ++ +E L+ ++KE K +
Sbjct: 115 -EEEKKEEEKPKKSVEELIKEILEKKEKEKEKKKV 148
Score = 26.9 bits (58), Expect = 8.3
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 11 RSKRSHKDSVGSSARPMGREAAKKKGIKKSKD----VAGLEEVEKEWVQFKEIKEQEIEH 66
+ K+S ++ + +E KKK K+ K+ V +++ E++ + +E KE+E
Sbjct: 123 KPKKSVEELIKEILEKKEKEKEKKKVEKERKEEKVRVVEVKKEERKEEKKEEKKEEEKPK 182
Query: 67 LKEYTKVQQEKNRLK-KMKMYLKLSSEEHLDDRKKEHLVKHIW 108
+K K ++ +L+ ++ K + + +KKE VK I+
Sbjct: 183 IKMSKKEREIMRKLEHAVEKEKKKQEKREKEKKKKEEEVKIIY 225
>MYHA_RAT (Q9JLT0) Myosin heavy chain, nonmuscle type B (Cellular
myosin heavy chain, type B) (Nonmuscle myosin heavy
chain-B) (NMMHC-B)
Length = 1976
Score = 33.5 bits (75), Expect = 0.089
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 30 EAAKKKGIKKSKDVAGLE-EVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMK 84
E A+KKG+K +KD AGLE +++ +E Q++ ++++EKN L++ +
Sbjct: 1297 EEAEKKGMKFAKDAAGLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNSLQEQQ 1352
Score = 28.5 bits (62), Expect = 2.9
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 4 NVGSGSSRSKRSHKDSVGSSARPMGREAAKK----KGIKKSKDVAGLEEVEKEWVQFKEI 59
N + RS D+ +E K +G KSK A + +E + Q +E
Sbjct: 1770 NTELAAERSAAQKSDNARQQLERQNKELKAKLQELEGAVKSKFKATISALEAKIGQLEEQ 1829
Query: 60 KEQEIEHLKEYTK-VQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVK 105
EQE + K V++ + +LK ++++++ E D+ KE + K
Sbjct: 1830 LEQEAKERAAANKLVRRTEKKLK--EIFMQVEDERRHADQYKEQMEK 1874
>IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B
(eIF-5B) (Translation initiation factor IF-2)
Length = 1220
Score = 33.5 bits (75), Expect = 0.089
Identities = 24/91 (26%), Positives = 44/91 (47%), Gaps = 3/91 (3%)
Query: 14 RSHKDSVGSSARPMGREAAKKKGIKKSKDVA---GLEEVEKEWVQFKEIKEQEIEHLKEY 70
+ KD +E KKKG K+ A L ++++E + K +E+ I+ L+E
Sbjct: 313 KKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEEL 372
Query: 71 TKVQQEKNRLKKMKMYLKLSSEEHLDDRKKE 101
++E+ RL++ K K E+ +R K+
Sbjct: 373 EAKRKEEERLEQEKRERKKQKEKERKERLKK 403
>USO1_YEAST (P25386) Intracellular protein transport protein USO1
Length = 1790
Score = 33.1 bits (74), Expect = 0.12
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 29 REAAKKKGIKKSKDVAGLEEVEKEWVQFKEI------KEQEIEHLKEYTKVQQEKNRLKK 82
+E KK ++ + ++ VE E V+ KE+ KE+E+ L++ K ++KN
Sbjct: 1233 KELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDKN---- 1288
Query: 83 MKMYLKLSSE-----EHLDDRKKE 101
YL+L E E LD + E
Sbjct: 1289 -SKYLELQKESEKIKEELDAKTTE 1311
Score = 26.9 bits (58), Expect = 8.3
Identities = 17/60 (28%), Positives = 30/60 (49%)
Query: 47 EEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVKH 106
EE++ + + K E+ K K + E +RLKK + ++EE L+ K E +K+
Sbjct: 1303 EELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQIKN 1362
>MAPB_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B)
(MAP1.2) (MAP1(X)) [Contains: MAP1 light chain LC1]
Length = 2464
Score = 33.1 bits (74), Expect = 0.12
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 13 KRSHKDSVGSSARPMGREAAK--KKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEY 70
K+ K + +P E K KK IKK + +EV+KE KE + E KE
Sbjct: 660 KKEDKTPLKKDEKPRKEEVKKEIKKEIKKEERKELKKEVKKETPLKDAKKEVKKEEKKEV 719
Query: 71 TKVQQE-KNRLKKMKMYLKLSSEEHLDDRKKEHLVK 105
K ++E K +KK+ +K S+ + D KK +K
Sbjct: 720 KKEEKEPKKEIKKISKDIKKSTPQ--SDTKKPSALK 753
>VIT_ANTGR (Q05808) Vitellogenin precursor [Contains: YP47; YP160]
Length = 1790
Score = 32.7 bits (73), Expect = 0.15
Identities = 28/84 (33%), Positives = 43/84 (50%), Gaps = 8/84 (9%)
Query: 9 SSRSKRSHKDSVGSSA---RPMGREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIE 65
S RS+ KD+ SSA R M E +++ ++ + A +E+V+K W Q +E
Sbjct: 843 SQRSQEQGKDNEWSSANIARLMNYERDEREQLE-AIIYAQVEDVQKLW----SFDNQTLE 897
Query: 66 HLKEYTKVQQEKNRLKKMKMYLKL 89
HL E + Q+E R K Y+KL
Sbjct: 898 HLPEVIRQQEEIYRQGKDFSYVKL 921
>TOP1_XENLA (P41512) DNA topoisomerase I (EC 5.99.1.2)
Length = 829
Score = 32.7 bits (73), Expect = 0.15
Identities = 21/98 (21%), Positives = 49/98 (49%), Gaps = 5/98 (5%)
Query: 11 RSKRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEY 70
++ H++ G R E + K +K +D G + EK+ + KE+++ ++ +++
Sbjct: 64 KNNDKHREKDGEKHRERDGEKHRDKNGEKHRD--GEKHKEKDIEKHKEVEKHRVKDGEKH 121
Query: 71 TKVQQEKNRLKKMKMYLKLSSEEHLD---DRKKEHLVK 105
+ EK++ K ++ + +H D ++KKE +K
Sbjct: 122 KEKDVEKHKEKDVEKHRDGEKHKHRDKDREKKKEEKMK 159
>NEUR_DROME (P29503) Neuralized protein
Length = 754
Score = 32.7 bits (73), Expect = 0.15
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 61 EQEIEHLKEY--------TKVQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVKHIWTKFG 112
+Q ++HL++ T QQ L L +S+++ L +KK HL+K I +FG
Sbjct: 30 QQHLQHLQQMQQLHNAMPTPAQQAAQVLAMESNELLMSTKDKLSSKKKMHLLKKIKKRFG 89
Query: 113 MYR 115
+ R
Sbjct: 90 LVR 92
>NEUM_XENLA (P55860) Neuromodulin (Axonal membrane protein GAP-43)
(PP46) (B-50) (Protein F1) (Calmodulin-binding protein
P-57)
Length = 214
Score = 32.7 bits (73), Expect = 0.15
Identities = 19/68 (27%), Positives = 35/68 (50%)
Query: 10 SRSKRSHKDSVGSSARPMGREAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKE 69
S +K S ++S G A E+ K + ++D A +E EK +++K+ E+E +K
Sbjct: 134 STTKGSTENSPGVDASQAKEESKKADVPEATQDAASEKEQEKAESSQEDVKKDEVEEIKA 193
Query: 70 YTKVQQEK 77
QQ++
Sbjct: 194 SESAQQDE 201
>MYHA_BOVIN (Q27991) Myosin heavy chain, nonmuscle type B (Cellular
myosin heavy chain, type B) (Nonmuscle myosin heavy
chain-B) (NMMHC-B)
Length = 1976
Score = 32.7 bits (73), Expect = 0.15
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 30 EAAKKKGIKKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKEYTKVQQEKNRLKKMKMYLKL 89
E A+KKGIK +KD AGLE Q ++ +E E ++ + +L++ + L+
Sbjct: 1297 EEAEKKGIKFAKDAAGLES------QLQDTQELLQEETRQKLNLSSRIRQLEEERSSLQE 1350
Query: 90 SSEEHLDDRK 99
EE + R+
Sbjct: 1351 QQEEEEEARR 1360
Score = 28.5 bits (62), Expect = 2.9
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 4 NVGSGSSRSKRSHKDSVGSSARPMGREAAKK----KGIKKSKDVAGLEEVEKEWVQFKEI 59
N + RS D+ +E K +G KSK A + +E + Q +E
Sbjct: 1770 NTELAAERSAAQKSDNARQQLERQNKELKAKLQELEGAVKSKFKATISALEAKIGQLEEQ 1829
Query: 60 KEQEIEHLKEYTK-VQQEKNRLKKMKMYLKLSSEEHLDDRKKEHLVK 105
EQE + K V++ + +LK ++++++ E D+ KE + K
Sbjct: 1830 LEQEAKERAAANKLVRRTEKKLK--EIFMQVEDERRHADQYKEQMEK 1874
>KF3B_MOUSE (Q61771) Kinesin-like protein KIF3B (Microtubule plus
end-directed kinesin motor 3B)
Length = 747
Score = 32.7 bits (73), Expect = 0.15
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 38 KKSKDVAGLEEVEKEWVQFKEIKEQEIEHLKE-YTKVQQEKN-RLKKM-KMYLKLSS-EE 93
+K +++A + E+E Q E +++E LKE YT +QQE + + KK+ K++ KL + +
Sbjct: 494 QKRQEIAEQKRREREIQQQMESRDEETLELKETYTSLQQEVDIKTKKLKKLFSKLQAVKA 553
Query: 94 HLDDRKKEHL 103
+ D ++EH+
Sbjct: 554 EIHDLQEEHI 563
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.309 0.127 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,953,543
Number of Sequences: 164201
Number of extensions: 552039
Number of successful extensions: 3913
Number of sequences better than 10.0: 351
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 255
Number of HSP's that attempted gapping in prelim test: 3446
Number of HSP's gapped (non-prelim): 644
length of query: 116
length of database: 59,974,054
effective HSP length: 92
effective length of query: 24
effective length of database: 44,867,562
effective search space: 1076821488
effective search space used: 1076821488
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC126782.12