BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126018.19 - phase: 0
(686 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPOC_LOTJA (Q9BBS8) DNA-directed RNA polymerase beta' chain (EC ... 1298 0.0
RPOC_SOYBN (Q8HVY4) DNA-directed RNA polymerase beta' chain (EC ... 1269 0.0
RPOC_ATRBE (Q8S8Y0) DNA-directed RNA polymerase beta' chain (EC ... 1256 0.0
RPOC_ARATH (P56763) DNA-directed RNA polymerase beta' chain (EC ... 1243 0.0
RPOC_SPIOL (P11705) DNA-directed RNA polymerase beta' chain (EC ... 1239 0.0
RPOC_TOBAC (P12116) DNA-directed RNA polymerase beta' chain (EC ... 1229 0.0
RPOC_SINAL (P46819) DNA-directed RNA polymerase beta' chain (EC ... 1227 0.0
RPOC_CALFE (Q7YJX9) DNA-directed RNA polymerase beta' chain (EC ... 1224 0.0
RPOC_AMBTC (P60287) DNA-directed RNA polymerase beta' chain (EC ... 1199 0.0
RPOC_OENHO (Q9MTM4) DNA-directed RNA polymerase beta' chain (EC ... 1194 0.0
RPOC_MAIZE (P16024) DNA-directed RNA polymerase beta' chain (EC ... 1076 0.0
RPOC_WHEAT (Q9XPS8) DNA-directed RNA polymerase beta' chain (EC ... 1069 0.0
RPOC_ORYSA (P12092) DNA-directed RNA polymerase beta' chain (EC ... 1065 0.0
RPOC_ANTFO (Q85CL6) DNA-directed RNA polymerase beta' chain (EC ... 925 0.0
RPOC_PHYPA (P60288) DNA-directed RNA polymerase beta' chain (EC ... 922 0.0
RPOC_MARPO (P06273) DNA-directed RNA polymerase beta' chain (EC ... 920 0.0
RPOC_PINKO (Q85WS8) DNA-directed RNA polymerase beta' chain (EC ... 900 0.0
RPOC_PINTH (P52733) DNA-directed RNA polymerase beta' chain (EC ... 897 0.0
RPOC_PSINU (Q8WI25) DNA-directed RNA polymerase beta' chain (EC ... 889 0.0
RPOC_ADICA (Q85FM8) DNA-directed RNA polymerase beta' chain (EC ... 806 0.0
>RPOC_LOTJA (Q9BBS8) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 682
Score = 1298 bits (3360), Expect = 0.0
Identities = 636/686 (92%), Positives = 657/686 (95%), Gaps = 4/686 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKHQ LRIGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDQYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGIC CGNYRVIGDKKD+PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICTCGNYRVIGDKKDEPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRG FEYEIQSWKYSIPLFFA
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGLFEYEIQSWKYSIPLFFA 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
T GFDTFRNREISSGAGAIREQLVDLDLRI++DSSLVEWKELGEE S NENEWEDRK
Sbjct: 181 THGFDTFRNREISSGAGAIREQLVDLDLRIVIDSSLVEWKELGEERST--HNENEWEDRK 238
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRKNFLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 239 VGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 298
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPM+DGHNKVYKSF
Sbjct: 299 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSF 358
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIR LIR
Sbjct: 359 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRSLIR 418
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
KHFASNIGVAKSKIREKEPIVWEILQEVMRGHP+LLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 419 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPILLNRAPTLHRLGIQAFQPILVEGRAI 478
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMA+HVPLSLEAQAEARLLMFSHTNLLSPAIGDPI+VPTQDML
Sbjct: 479 CLHPLVCKGFNADFDGDQMAIHVPLSLEAQAEARLLMFSHTNLLSPAIGDPIAVPTQDML 538
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLY+LTSGNRRGICANRYN N +NSKNEKI + KYMKKKEPFF NSYDAIGA+RQK
Sbjct: 539 IGLYILTSGNRRGICANRYNRSNWKNSKNEKI--RDKKYMKKKEPFFSNSYDAIGAFRQK 596
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
+IN DSPFWLRWR+D+CIMSSRE PIEVHYES GTY++IY HYLVIRSIKK+I CIYIRT
Sbjct: 597 KINFDSPFWLRWRLDKCIMSSREAPIEVHYESLGTYHDIYEHYLVIRSIKKQICCIYIRT 656
Query: 661 TVGHISFYREIEEAIQGFSRAYSYGI 686
T+GHISFYREIEEAIQGF R YSYGI
Sbjct: 657 TIGHISFYREIEEAIQGFCRGYSYGI 682
>RPOC_SOYBN (Q8HVY4) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 682
Score = 1269 bits (3284), Expect = 0.0
Identities = 625/686 (91%), Positives = 645/686 (93%), Gaps = 7/686 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKHQ LRIGSVSP+QISAWAKKILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDQYKHQQLRIGSVSPQQISAWAKKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVI DKKD PKFCEQCGVEF+DSR+RRYQMGYIKLAC VTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIRDKKDDPKFCEQCGVEFIDSRIRRYQMGYIKLACLVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDK LKELE LVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKSLKELESLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLR I+D S EWKELGEEGS NE WEDRK
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRTIIDYSFAEWKELGEEGSTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRKNFLVRR+EL KHF+RTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 237 VGRRKNFLVRRIELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR
Sbjct: 357 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
KHFASNIG+AKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 417 KHFASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNC---RNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAY 597
IGLY+LTSGNRRGI +NRYNP NC RN KNE+I +NN KY KKKEPFFCNSYDAIGAY
Sbjct: 537 IGLYILTSGNRRGIYSNRYNPRNCGNFRNLKNERIRDNNYKYTKKKEPFFCNSYDAIGAY 596
Query: 598 RQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIY 657
+QKRIN DSP WLRWR+DQ I+SSREVPIEVHYES GTY+EIY HYLV+RS KKEIR IY
Sbjct: 597 QQKRINFDSPLWLRWRLDQRIISSREVPIEVHYESLGTYHEIYEHYLVVRSTKKEIRSIY 656
Query: 658 IRTTVGHISFYREIEEAIQGFSRAYS 683
IRT VGHISFYREIEEAIQGF RAYS
Sbjct: 657 IRTNVGHISFYREIEEAIQGFCRAYS 682
>RPOC_ATRBE (Q8S8Y0) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 681
Score = 1256 bits (3250), Expect = 0.0
Identities = 614/685 (89%), Positives = 646/685 (93%), Gaps = 5/685 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLRII+++SLVEW+ELGEEG NE WEDRK
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEGHTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FLVRR+EL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 237 VGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAI
Sbjct: 417 QHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLTSGNRRGIC NRYNP N RN +N+K S +NS Y KEPFF NSYDAIGAYRQK
Sbjct: 537 IGLYVLTSGNRRGICVNRYNPCNRRNYQNQKRS-DNSYYKYTKEPFFSNSYDAIGAYRQK 595
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINLDSP WLRWR+DQ +++SRE PIEVHYES GT+YEIYGHYL++RS+KK+I IYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKQILFIYIRT 655
Query: 661 TVGHISFYREIEEAIQGFSRAYSYG 685
TVGHI+ YREIEEAIQGFSRAYSYG
Sbjct: 656 TVGHIALYREIEEAIQGFSRAYSYG 680
>RPOC_ARATH (P56763) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 680
Score = 1243 bits (3215), Expect = 0.0
Identities = 605/684 (88%), Positives = 642/684 (93%), Gaps = 6/684 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIG VSP+QISAWA KI+PNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKL CPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRGSFEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFD FRNREIS+GAGAIREQL DLDLRII+++SLVEWK+LGEEG NE WEDRK
Sbjct: 181 TQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+ RRK+FLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQI+GGKLMSSDINELY
Sbjct: 237 IVRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAKS+IREK+PIVWEILQEVM+GHPVLLNRAPTLHRLGIQ+FQPILVEGR I
Sbjct: 417 QHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLTSG RRGICANRYNP N +N +NE+I N KY KEPFFCNSYDAIGAYRQK
Sbjct: 537 IGLYVLTSGTRRGICANRYNPCNRKNYQNERIYETNYKY--TKEPFFCNSYDAIGAYRQK 594
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
+INLDSP WLRW++DQ +++SREVPIEVHYESFG Y+EIY HYL++RS+KKE CIYIRT
Sbjct: 595 KINLDSPLWLRWQLDQRVIASREVPIEVHYESFGNYHEIYAHYLIVRSVKKENFCIYIRT 654
Query: 661 TVGHISFYREIEEAIQGFSRAYSY 684
TVGHISFYREIEEAIQGFS+A SY
Sbjct: 655 TVGHISFYREIEEAIQGFSQACSY 678
>RPOC_SPIOL (P11705) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 677
Score = 1239 bits (3207), Expect = 0.0
Identities = 608/683 (89%), Positives = 639/683 (93%), Gaps = 6/683 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKHQ LRIGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDQYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+ LDKPLKELEGLVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANFLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLR I+D S EWKELGEEGS NE WEDRK
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLADLDLRTIIDYSFAEWKELGEEGSTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FLVRRMELVKHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 237 VGRRKDFLVRRMELVKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLL+TSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLTDLLSTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAK KIREKEPIVW+ILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 417 QHLASNIGVAKRKIREKEPIVWKILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLY+LTSGNRRGICANRYNP+N + +NE+I + N K M KEPFFCN YDAIGAYRQK
Sbjct: 537 IGLYILTSGNRRGICANRYNPWNHKTYQNERIDDTNYKSM--KEPFFCNFYDAIGAYRQK 594
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RI+LDSP WLRW++DQ I++S+E PIEVHYES GTY+EIY HYL+IRS+KKEI IYIRT
Sbjct: 595 RIHLDSPLWLRWQLDQRIIASKEAPIEVHYESLGTYHEIYAHYLIIRSVKKEIIDIYIRT 654
Query: 661 TVGHISFYREIEEAIQGFSRAYS 683
TVGHIS YREIEEAIQGF +A S
Sbjct: 655 TVGHISLYREIEEAIQGFYQACS 677
>RPOC_TOBAC (P12116) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 680
Score = 1229 bits (3181), Expect = 0.0
Identities = 605/685 (88%), Positives = 638/685 (92%), Gaps = 6/685 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QISAWA KILPNGEIVGEVTKPYT HYKTNKPEK F +
Sbjct: 1 MIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKMDYFVKN- 59
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 60 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 119
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEGLVYCDFSFARP+ KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 120 RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFT 179
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL DLDLRII+++SLVEW+ELGEEG NE WEDRK
Sbjct: 180 TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLVEWEELGEEGHTGNE----WEDRK 235
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
VGRRK+FLVRR+EL KHFIRTNIEPEWMVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 236 VGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 295
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 296 RRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 355
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 356 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 415
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIGVAKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQP+LVEGRAI
Sbjct: 416 QHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAI 475
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 476 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDML 535
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLTSGN RGIC NRYNP N RN +N+K S +NS Y KEPFF NSYDAIGAYRQK
Sbjct: 536 IGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRS-DNSHYKYTKEPFFSNSYDAIGAYRQK 594
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINLDSP WLRWR+DQ +++SRE PIEVHYES GT+YEIYGHYL++RS+KK+I IYIRT
Sbjct: 595 RINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKQILFIYIRT 654
Query: 661 TVGHISFYREIEEAIQGFSRAYSYG 685
TVGHI+ YREIEEAIQGFSRAYS G
Sbjct: 655 TVGHIALYREIEEAIQGFSRAYSSG 679
>RPOC_SINAL (P46819) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 688
Score = 1227 bits (3174), Expect = 0.0
Identities = 602/692 (86%), Positives = 639/692 (91%), Gaps = 14/692 (2%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIG VSP+QISAWA K +PNGEIVGEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGLVSPQQISAWATKKIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K PKFCEQCGVEFVDSR+RRYQMGYIKL CPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKGDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCD--------FSFARPVVKKPTFLRLRGSFEYEIQSWK 172
RLPSYIA+LLDKPLKELEGLVYCD FSFARP+ KKPTFLRLRGSFEYEIQSWK
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDVCFDRNPNFSFARPITKKPTFLRLRGSFEYEIQSWK 180
Query: 173 YSIPLFFATQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNEN 232
YSIPLFF TQGF+ FRNREIS+GAGAIREQL DLDLRII+++SLVEWK+LGEEG NE
Sbjct: 181 YSIPLFFTTQGFEIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNE- 239
Query: 233 ENEWEDRKVGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLM 292
WEDRK+ RRK+FLVRRMEL KHFIRTNIEPEWMVL LLPVLPPELRPIIQI+GGKLM
Sbjct: 240 ---WEDRKIVRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLM 296
Query: 293 SSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDG 352
SSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDG
Sbjct: 297 SSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDG 356
Query: 353 HNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQT 412
HNKVYKSFSD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQT
Sbjct: 357 HNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQT 416
Query: 413 FLIRGLIRKHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP 472
F+IRGLIR+H ASNIGVAKS+IREK+PIVWEILQEVM+GHPVLLNRAPTLHRLGIQ+FQP
Sbjct: 417 FVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQP 476
Query: 473 ILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPI 532
ILVEGR ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSPAIGDPI
Sbjct: 477 ILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPI 536
Query: 533 SVPTQDMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYD 592
SVPTQDMLIGLYVLTSG RRGICANRYNP N +N +NE+I N KYM KEPFFCNSYD
Sbjct: 537 SVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYM--KEPFFCNSYD 594
Query: 593 AIGAYRQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKE 652
AIGAYRQKRINLDSP WLRW++DQ +++S+EVPIEVHYESFG Y+EIY HYL++RS+KKE
Sbjct: 595 AIGAYRQKRINLDSPLWLRWQLDQRVIASKEVPIEVHYESFGNYHEIYAHYLIVRSVKKE 654
Query: 653 IRCIYIRTTVGHISFYREIEEAIQGFSRAYSY 684
IYIRTTVGHIS YREIEEAIQGFS+A SY
Sbjct: 655 TLYIYIRTTVGHISLYREIEEAIQGFSQACSY 686
>RPOC_CALFE (Q7YJX9) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 678
Score = 1224 bits (3166), Expect = 0.0
Identities = 601/683 (87%), Positives = 635/683 (91%), Gaps = 5/683 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QI AWA K LPNGEI+GEVTKPYT HYKTNKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGSVSPQQIRAWANKTLPNGEIIGEVTKPYTFHYKTNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKE EGLVYCDFSFARP+ KKPTFLRLRGSFE EIQS KYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKEFEGLVYCDFSFARPIAKKPTFLRLRGSFESEIQSRKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GA AIREQL D DLRII D SLVEWKELGEEGS NE WEDRK
Sbjct: 181 TQGFDTFRNREISTGASAIREQLADPDLRIITDHSLVEWKELGEEGSTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+GRRK+FLVRR+EL KHFIRTN+EPE MVL LLPVLPPELRPIIQIDGGKLMSSDINELY
Sbjct: 237 IGRRKDFLVRRIELAKHFIRTNVEPERMVLCLLPVLPPELRPIIQIDGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL D LTTS STPGE VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLTDPLTTSTSTPGESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIG+AKSKIREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 417 QHVASNIGIAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSP IGDPISVPTQDML
Sbjct: 477 CLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPTIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLT GNRRGICANRYNP+N NS+NE++++ N Y KKEP+FC+S DA+GAYRQK
Sbjct: 537 IGLYVLTIGNRRGICANRYNPWNRGNSQNERVNDTNYMY-TKKEPYFCSSSDALGAYRQK 595
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RINLDSP WLRWR+DQ +++SREVPIEV YES GTY+EIYGHYL++RSIKKEI CIYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYLIVRSIKKEILCIYIRT 655
Query: 661 TVGHISFYREIEEAIQGFSRAYS 683
TVGHISFYREIEEAIQGF RAYS
Sbjct: 656 TVGHISFYREIEEAIQGFCRAYS 678
>RPOC_AMBTC (P60287) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 680
Score = 1199 bits (3102), Expect = 0.0
Identities = 589/684 (86%), Positives = 630/684 (91%), Gaps = 6/684 (0%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIG VSP+QI+AWA KILPNGE+VGEVTKPYT HYK+NKPEKDGLFCERI
Sbjct: 1 MIDRYKHQQLRIGLVSPQQITAWANKILPNGEMVGEVTKPYTFHYKSNKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGNYRVIGD+K+ PKFCEQCGVE VDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVESVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+L D+PLKELEGLVYCDFSFARP+ KKPTFLRLRGSFEYEIQS KYSIPLFF
Sbjct: 121 RLPSYIANLSDRPLKELEGLVYCDFSFARPIAKKPTFLRLRGSFEYEIQSRKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQ F+ FRNREIS+GAGAIREQL D DLRII D SLVEWKELGEE SA ENEWED+K
Sbjct: 181 TQCFNLFRNREISTGAGAIREQLADPDLRIITDRSLVEWKELGEERSA----ENEWEDKK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+ RRK+FLVRRMEL KH +RTN+EPE MVL LLPVLPPELRPIIQIDGGK MSSDINELY
Sbjct: 237 IVRRKDFLVRRMELAKHLLRTNVEPERMVLCLLPVLPPELRPIIQIDGGKPMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTLID LTTSRSTPGE VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF
Sbjct: 297 RRVIYRNNTLIDPLTTSRSTPGESVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H ASNIG+AKSKIREKEPIVWEILQ+VM GHPVLLNRAPTLHRLGIQAFQPILVEGRAI
Sbjct: 417 QHVASNIGIAKSKIREKEPIVWEILQKVMEGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH NLLSPAIGDPISVPTQDML
Sbjct: 477 CLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLYVLT GNRRGIC NRYNP N RN +NE + +NN KY K+KEP+FC+SYDA+GAYRQK
Sbjct: 537 IGLYVLTIGNRRGICTNRYNPCNYRNYQNEIVDDNNYKYTKEKEPYFCSSYDALGAYRQK 596
Query: 601 RINLDSPFWLRWRIDQCIMSS--REVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYI 658
RI+L SP WLRWR+DQC+++S REVPIEV YES G Y+EI+ HY +++S+KKEI CIYI
Sbjct: 597 RIDLYSPLWLRWRLDQCVIASINREVPIEVQYESLGIYHEIHEHYRIVKSVKKEIVCIYI 656
Query: 659 RTTVGHISFYREIEEAIQGFSRAY 682
RTTVGHISFYREIEEAIQGF R Y
Sbjct: 657 RTTVGHISFYREIEEAIQGFCRTY 680
>RPOC_OENHO (Q9MTM4) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 679
Score = 1194 bits (3089), Expect = 0.0
Identities = 584/684 (85%), Positives = 626/684 (91%), Gaps = 7/684 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MID+YKHQ LRIGSVSP+QIS WA KILPNGEIVGEVTKPYT HYKTNKPE+DGLFCERI
Sbjct: 1 MIDRYKHQQLRIGSVSPQQISTWANKILPNGEIVGEVTKPYTFHYKTNKPERDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACG YRVIGDKK+ P FCEQCGVEFVDSR+RRYQMGYIKLACP THVWYLK
Sbjct: 61 FGPIKSGICACGTYRVIGDKKEDPNFCEQCGVEFVDSRIRRYQMGYIKLACPATHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LLDKPLKELEG VYCDFSFARPV KKPTFLRLRG FEYEIQSWKYSIPLFF
Sbjct: 121 RLPSYIANLLDKPLKELEGKVYCDFSFARPVAKKPTFLRLRGLFEYEIQSWKYSIPLFFT 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
TQGFDTFRNREIS+GAGAIREQL LDLR+I+D SLVEWKELGEE S NE WEDRK
Sbjct: 181 TQGFDTFRNREISTGAGAIREQLAGLDLRVIIDYSLVEWKELGEERSTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+GRRK FLVRR+EL KHFIRTNIEPEWMVL LLPVLPPELRPIIQ+DGGKLMSSDINELY
Sbjct: 237 IGRRKQFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQMDGGKLMSSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNN L DLLTTSRSTPG+LVM QEKLVQEAVDTLLDNGIR +P+RDG NKVYKSF
Sbjct: 297 RRVIYRNNILADLLTTSRSTPGDLVMGQEKLVQEAVDTLLDNGIRSRPVRDGQNKVYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGP+L LHRCGLPREIAIELFQTFLIRGLIR
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPTLPLHRCGLPREIAIELFQTFLIRGLIR 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H AS+I AKS+IREKEPIVWEILQ+VM+GHPVLLNRAPTLHRLGIQAFQP LV+G AI
Sbjct: 417 QHHASDIVGAKSQIREKEPIVWEILQQVMQGHPVLLNRAPTLHRLGIQAFQPFLVKGDAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVHVPLSLEAQ EARLLMFSH NLLSPA+GDPISVPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAMGDPISVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
IGLY+LTSGN RGIC NRYNP+N N +NE+IS+NN KKKEPFFCNSYDAIGAYRQK
Sbjct: 537 IGLYILTSGNPRGICTNRYNPWNRSNYQNERISDNN---WKKKEPFFCNSYDAIGAYRQK 593
Query: 601 RINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYIRT 660
RI+LDSP WLRWR+DQ +++SREVPIEV YES GTY+EIYGHY+++RS+K EI +YIRT
Sbjct: 594 RIHLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYIIVRSVKTEILWMYIRT 653
Query: 661 TVGHISFYREIEEAIQGFSRAYSY 684
TVGHIS +RE+EEAIQGF RA Y
Sbjct: 654 TVGHISLFREMEEAIQGFCRARWY 677
>RPOC_MAIZE (P16024) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 683
Score = 1076 bits (2783), Expect = 0.0
Identities = 537/689 (77%), Positives = 594/689 (85%), Gaps = 9/689 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKH+ L+IG VSP+QI AWAKKILPNGE+VGEVT+P T HYKT+KPEKDGLFCERI
Sbjct: 1 MIDQYKHKQLQIGLVSPQQIKAWAKKILPNGEVVGEVTRPSTFHYKTDKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGN R + + +FC++CGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNSRASVRENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
LPSYIA+LLDKPLK+LEGLVY DFSFARP KKPTFLRLRG FE EI S +SI FF+
Sbjct: 121 GLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLFEDEISSCNHSISPFFS 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
T GF TFRNREI++GAGAIREQL DLDLRII+++SLVEWKEL +EG + +E WEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEGYSGDE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
RK FL+RRM+L KHFI+TN+EPEWMVL LLPVLPPELRPI+ G K+++SDINELY
Sbjct: 237 RRIRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
+RVI RNN L LL S P +LVMCQEKLVQEAVDTLLD+G RGQP RDGHNKVYKS
Sbjct: 297 KRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSL 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+CGLP EIAI+LFQ F+IR LI
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLIT 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
K SN+ +AK KI EKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP LVEGR I
Sbjct: 417 KRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVH+PLSLEAQAEARLLMFSH NLLSPAIGDPI VPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNS---KYMKKKEPFFCNSYDAIGAY 597
IGLYVLT GNR GICANRYN +C NS N+K++ NN+ KY K KEP F +SYDA+GAY
Sbjct: 537 IGLYVLTIGNRLGICANRYN--SCGNSPNKKVNYNNNNYYKYTKDKEPHFSSSYDALGAY 594
Query: 598 RQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIY 657
RQKRI L+SP WLRW++DQ I+ SREVPIEV YESFGTY+EIY HYLV+ + KKEIR IY
Sbjct: 595 RQKRIGLNSPLWLRWKLDQRIVGSREVPIEVQYESFGTYHEIYAHYLVVGNRKKEIRSIY 654
Query: 658 IRTTVGHISFYREIEEAIQGFSRAYSYGI 686
IRTT+GHISFYREIEEAIQGFSRAYSY I
Sbjct: 655 IRTTLGHISFYREIEEAIQGFSRAYSYTI 683
>RPOC_WHEAT (Q9XPS8) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 683
Score = 1069 bits (2764), Expect = 0.0
Identities = 533/687 (77%), Positives = 589/687 (85%), Gaps = 9/687 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKHQ L+IG VSP+QI AWA K LPNGE+VGEVT+P T HYKT+KPEKDGLFCERI
Sbjct: 1 MIDQYKHQQLQIGLVSPQQIKAWANKNLPNGEVVGEVTRPSTFHYKTDKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACGN R G + + +FC++CGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
LPSYIA+LLDKPLK+LEGLVY DFSFARP KKPTFLRLRG FE EI S +SI FF+
Sbjct: 121 GLPSYIANLLDKPLKKLEGLVYGDFSFARPSTKKPTFLRLRGLFEEEIASCNHSISPFFS 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
T GF TFRNREI++GAGAIREQL DLDLRII+++SLVEWKEL +EG + +E WEDRK
Sbjct: 181 TPGFATFRNREIATGAGAIREQLADLDLRIIIENSLVEWKELEDEGYSGDE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
RK FL+RRM+L KHFI+TN+EPEWMVL LLPVLPPELRPI+ G K+++SDINELY
Sbjct: 237 RRIRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
+RVI RNN L LL S P +LVMCQEKLVQEAVDTLLD+G RGQP RDGHNKVYKS
Sbjct: 297 KRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSL 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+CGLP EIAI+LFQ F+IR LI
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLIT 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
K SN+ +AK KI EKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP LVEGR I
Sbjct: 417 KRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
LHPLVCKGFNADFDGDQMAVH+PLSLEAQAEARLLMFSH NLLSPAIGDPI VPTQDML
Sbjct: 477 SLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKI---SNNNSKYMKKKEPFFCNSYDAIGAY 597
IGLYVLT G RRGICANRYN +CRN N K+ +NNNSKY K KEP F +SYDA+GAY
Sbjct: 537 IGLYVLTIGKRRGICANRYN--SCRNYPNLKVNYNNNNNSKYRKDKEPHFSSSYDALGAY 594
Query: 598 RQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIY 657
RQK I+LDSP WLRW +DQ ++ SREVPIEV YES GTY+EIY HYL++ + KKEIR IY
Sbjct: 595 RQKLISLDSPLWLRWNLDQRVIGSREVPIEVQYESLGTYHEIYAHYLIMGNRKKEIRSIY 654
Query: 658 IRTTVGHISFYREIEEAIQGFSRAYSY 684
IRTT+GHISFYREIEEAIQGFS+AYSY
Sbjct: 655 IRTTLGHISFYREIEEAIQGFSQAYSY 681
>RPOC_ORYSA (P12092) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 682
Score = 1065 bits (2753), Expect = 0.0
Identities = 531/688 (77%), Positives = 587/688 (85%), Gaps = 8/688 (1%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQYKHQ L+IG VSP+QI AWA K LPNGE+VGEVT+P T HYKT+KPEKDGLFCERI
Sbjct: 1 MIDQYKHQQLQIGLVSPQQIKAWANKTLPNGEVVGEVTRPSTFHYKTDKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKS ICACGN R G + + +FC++CGVEFVDSR+RRYQMGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
LPSYIA+LLDKPLK+LEGLVY DFSFARP KKPTFLRLRG FE EI S +SI FF+
Sbjct: 121 GLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLFEDEISSCNHSISPFFS 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
T GF TFRNREI++GAGAIREQL DLDLRII+++S VEWKEL +EG + +E WEDRK
Sbjct: 181 TPGFTTFRNREIATGAGAIREQLADLDLRIILENSSVEWKELEDEGYSGDE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
RK FL+RRM+L KHFI+TN+EPEWMVL LLPVLPPELRPI+ G K+++SDINELY
Sbjct: 237 RRIRKVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
+RVI RNN L LL S P +LVMCQEKLVQEAVDTLLD+G RGQP RDGHNKVYKS
Sbjct: 297 KRVIRRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSL 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+CGLP EIAI+LFQ F+IR LI
Sbjct: 357 SDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLIT 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
K SN+ +AK KI EKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP LVEGR I
Sbjct: 417 KRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
CLHPLVCKGFNADFDGDQMAVH+PLSLEAQAEARLLMFSH NLLSPAIGDPI VPTQDML
Sbjct: 477 CLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKI--SNNNSKYMKKKEPFFCNSYDAIGAYR 598
IGLYVLT GNRRGICANRYN +C N N+K+ +NNN KY K KE F +SYDA+GAYR
Sbjct: 537 IGLYVLTIGNRRGICANRYN--SCGNYPNQKVNYNNNNPKYTKDKESLFSSSYDALGAYR 594
Query: 599 QKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYI 658
QK+I LDSP WLRW++DQ ++ REVPIEV YES GTY EIY HYLV+ + KKEIR IYI
Sbjct: 595 QKQICLDSPLWLRWKLDQRVIGLREVPIEVQYESLGTYREIYAHYLVVGNRKKEIRSIYI 654
Query: 659 RTTVGHISFYREIEEAIQGFSRAYSYGI 686
RTT+GHISFYREIEEAIQGFS+AYSY I
Sbjct: 655 RTTLGHISFYREIEEAIQGFSQAYSYTI 682
>RPOC_ANTFO (Q85CL6) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 681
Score = 925 bits (2391), Expect = 0.0
Identities = 452/681 (66%), Positives = 554/681 (80%), Gaps = 19/681 (2%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MI Q ++QHLRIG SPE+I WA++ LPNGE+VG +T+PYTLHYKT+KPEKDGLFCERI
Sbjct: 1 MIYQEENQHLRIGLASPEEIRGWAERTLPNGEVVGRITEPYTLHYKTHKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACG YR I ++++ K CEQCGVEF +SRVRRY+MGYI+LACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGKYRSIENQREYSKICEQCGVEFTESRVRRYRMGYIELACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LL KPLKELE LVYCD ARP+ KKPT L+LRG F+YE QSWK P FF+
Sbjct: 121 RLPSYIANLLAKPLKELESLVYCDLFLARPIAKKPTLLKLRGLFKYEDQSWKEIFPRFFS 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
+GF+ F++RE+++G AI + L L+L+I+MD + +EW+ L E+ S NE WEDRK
Sbjct: 181 PRGFEAFQDREVATGGNAIEKGLASLNLQIVMDRAYMEWRNLTEQKSTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+ RRK+ LVRRMEL K+F++TN++PEWMVLSLLPVLPPELRP+I++ G+L++SD+NELY
Sbjct: 237 IQRRKDLLVRRMELAKNFLQTNMKPEWMVLSLLPVLPPELRPMIELGEGELITSDLNELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL+D L RSTPG LV+CQ++LVQEAVD L+DNGIRGQPMRD HN+ YKSF
Sbjct: 297 RRVIYRNNTLLDFLARGRSTPGGLVVCQKRLVQEAVDALIDNGIRGQPMRDSHNRAYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRE LLGKRVDYSGRSVIV GP L LH CGLP+E+A+ELFQ F+IRGLI
Sbjct: 357 SDLIEGKEGRFRENLLGKRVDYSGRSVIVAGPYLPLHECGLPKEMAVELFQAFVIRGLIG 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
++ A N+ AKS I++KEPI+W+IL+EV++GHPVLLNRAPTLHRLGIQAF+PILVEGRAI
Sbjct: 417 RYLAPNLRAAKSMIQDKEPIIWKILKEVIQGHPVLLNRAPTLHRLGIQAFEPILVEGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
LHPLVC GFNADFDGDQMAVH+PLSLEAQ EARLLMFSHTNLLSP G+P+SVP+QDML
Sbjct: 477 RLHPLVCAGFNADFDGDQMAVHIPLSLEAQVEARLLMFSHTNLLSPVTGNPVSVPSQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAI-GAYRQ 599
+G+YV T + RGI N+Y+P++ R N N Y + F+ +SYD I A +Q
Sbjct: 537 LGIYVSTIRSNRGIYQNQYHPYDYR--------NKNFSY----KMFYFHSYDDILKAEKQ 584
Query: 600 KRINLDSPFWLRWRIDQCIMSS--REVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIY 657
K+INL SP WLRW++D I++S REVPIE+ YES GT +IY +Y ++ K++I +Y
Sbjct: 585 KQINLHSPLWLRWQVDLHIVTSIDREVPIEIQYESLGTSSQIYENYQFRKNRKEKILSMY 644
Query: 658 IRTTVGHISFYREIEEAIQGF 678
I TT G I F ++IEEAIQGF
Sbjct: 645 ICTTAGRILFNQQIEEAIQGF 665
>RPOC_PHYPA (P60288) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 679
Score = 922 bits (2382), Expect = 0.0
Identities = 454/683 (66%), Positives = 550/683 (80%), Gaps = 19/683 (2%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MI + K+ HLRI SPEQI +WA+++LPNGEIVG+VTKPYTLHYKT+KPEKDGLFCERI
Sbjct: 1 MIHREKYHHLRIRLASPEQIRSWAERVLPNGEIVGQVTKPYTLHYKTHKPEKDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACG Y++I + KFCEQCGVEFV+SRVRRY+MGYIKLACPVTHVWYLK
Sbjct: 61 FGPIKSGICACGKYQII---EKYSKFCEQCGVEFVESRVRRYRMGYIKLACPVTHVWYLK 117
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LL KPLKELE LVYCD ARP+ KKP L+LRG F+YE QSW+ P +F+
Sbjct: 118 RLPSYIANLLAKPLKELESLVYCDLFLARPISKKPILLKLRGLFKYEDQSWREIFPRYFS 177
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
++GF+ F+N+EI++G AI++QL +LDL+ ++D + +EWKEL E+ S NE WEDRK
Sbjct: 178 SRGFEAFQNKEIATGGDAIKKQLSNLDLQGVLDYAYIEWKELVEQKSTGNE----WEDRK 233
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+ RRK+ LVRR++L K F++TNI+PEWMVLSLLPVLPPELRP+I++ G+L++SD+NELY
Sbjct: 234 IQRRKDLLVRRIKLAKQFLQTNIKPEWMVLSLLPVLPPELRPMIELGEGELITSDLNELY 293
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTLID L S STPG LV+CQ +LVQEAVD L+DNGIRGQPM+D HN+ YKSF
Sbjct: 294 RRVIYRNNTLIDFLARSGSTPGGLVVCQIRLVQEAVDGLIDNGIRGQPMKDSHNRPYKSF 353
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRE LLGKRVDYSGRSVIVVGP LSLH+CGLPRE+AIELFQ F+IRGLI
Sbjct: 354 SDVIEGKEGRFRENLLGKRVDYSGRSVIVVGPFLSLHQCGLPREMAIELFQAFVIRGLIG 413
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
+H A N+ AKS I+ KEPI+W+ILQE+M+GHPVLLNRAPTLHRLGIQAFQPIL++GRAI
Sbjct: 414 RHLAPNLRAAKSMIQNKEPIIWKILQEIMQGHPVLLNRAPTLHRLGIQAFQPILIKGRAI 473
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
LHPLVC GFNADFDGDQMAVH+PLSLEAQAEARLLMFSHTNLLSPA GDP+SVP+QDML
Sbjct: 474 RLHPLVCGGFNADFDGDQMAVHIPLSLEAQAEARLLMFSHTNLLSPATGDPVSVPSQDML 533
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGAYRQK 600
+GLY+LT N +GI N+ +P+ NN+K K P+F + D I AY QK
Sbjct: 534 LGLYILTIKNHQGIYGNKNHPY----------KQNNNKIFLNKTPYFSSYDDVIKAYNQK 583
Query: 601 RINLDSPFWLRW--RIDQCIMSSREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIRCIYI 658
++ L S WL W ++ +RE PIEV Y S G ++IY HY + ++ ++ +YI
Sbjct: 584 KVRLHSALWLWWGSKLRTITSINREKPIEVQYNSSGISFKIYEHYQLKKNKNEKNFSVYI 643
Query: 659 RTTVGHISFYREIEEAIQGFSRA 681
TTVG I F ++IEEAIQG +A
Sbjct: 644 CTTVGRIIFNQQIEEAIQGTLKA 666
>RPOC_MARPO (P06273) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 684
Score = 920 bits (2377), Expect = 0.0
Identities = 454/687 (66%), Positives = 553/687 (80%), Gaps = 24/687 (3%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
M Q KHQHLRI SPEQI WA+++LPNGEIVG+VTKPYTLHYKT+KPEKDGLFCE+I
Sbjct: 1 MTYQKKHQHLRIELASPEQIRNWAERVLPNGEIVGQVTKPYTLHYKTHKPEKDGLFCEKI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSGICACG Y+ I KK+ KFCEQCGVEF++SR+RRY+MGYIKLAC VTHVWYLK
Sbjct: 61 FGPIKSGICACGKYQGIEKKKENIKFCEQCGVEFIESRIRRYRMGYIKLACSVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LL KPLKELE LVYCD ARP+ KKPT L+L+G F+YE QSWK P FF+
Sbjct: 121 RLPSYIANLLAKPLKELESLVYCDLFLARPITKKPTLLKLQGLFKYEDQSWKDIFPRFFS 180
Query: 181 TQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEWEDRK 240
+GF+ F+NREI++G AI++QL +L+L+ +++ + +EWKE E+ S NE WEDRK
Sbjct: 181 PRGFEVFQNREIATGGDAIQKQLTNLNLQNVINLAHLEWKEFAEQKSTGNE----WEDRK 236
Query: 241 VGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDINELY 300
+ RRK+ LVRR++L KHFI+TNI+PEWMVLSLLPVLPPELRP+I++ G+L++SD+NELY
Sbjct: 237 IQRRKDLLVRRIKLAKHFIQTNIKPEWMVLSLLPVLPPELRPMIELGEGELITSDLNELY 296
Query: 301 RRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSF 360
RRVIYRNNTL+D L S STPG LV+CQ++LVQEAVD L+DNGIRGQPM+D HN+ YKSF
Sbjct: 297 RRVIYRNNTLLDFLARSGSTPGGLVVCQKRLVQEAVDALIDNGIRGQPMKDSHNRPYKSF 356
Query: 361 SDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIR 420
SD+IEGKEGRFRE LLGKRVDYSGRSVIVVGP L LH+CGLPRE+AIELFQ F+IRGLI
Sbjct: 357 SDLIEGKEGRFRENLLGKRVDYSGRSVIVVGPFLPLHQCGLPREMAIELFQAFVIRGLIG 416
Query: 421 KHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAI 480
++FA N+ AK+ I+ KEPI+W++LQEVM+GHP+LLNRAPTLHRLGIQAFQPILV GRAI
Sbjct: 417 RNFAPNLRAAKTMIQNKEPIIWKVLQEVMQGHPILLNRAPTLHRLGIQAFQPILVNGRAI 476
Query: 481 CLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDML 540
LHPLVC GFNADFDGDQMAVH+PLSLEAQAEARLLM SH NLLSPA G+PISVP+QDML
Sbjct: 477 HLHPLVCGGFNADFDGDQMAVHIPLSLEAQAEARLLMLSHKNLLSPATGEPISVPSQDML 536
Query: 541 IGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKE----PFFCNSYDAIGA 596
+GLY+LT N +GI N+YNP + KY KK+ P+F + + A
Sbjct: 537 LGLYILTIENNQGIYGNKYNP--------------SKKYDSKKKFSQIPYFSSYDNVFRA 582
Query: 597 YRQKRINLDSPFWLRWRIDQCIMS--SREVPIEVHYESFGTYYEIYGHYLVIRSIKKEIR 654
+QK+I L S WLRW+I+ I++ ++E PIE+ Y+SFG ++IY HY + ++ +EI
Sbjct: 583 LQQKQIYLHSSLWLRWQINLRIITLLNQEGPIEIQYKSFGNSFQIYEHYQLRKNKNQEII 642
Query: 655 CIYIRTTVGHISFYREIEEAIQGFSRA 681
YI TT G I F ++IEEAIQG +A
Sbjct: 643 STYICTTAGRILFNQQIEEAIQGTYKA 669
>RPOC_PINKO (Q85WS8) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 696
Score = 900 bits (2327), Expect = 0.0
Identities = 465/695 (66%), Positives = 544/695 (77%), Gaps = 29/695 (4%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MI+Q KHQ LRIG SPEQI AW++KILPNGEIVG+VTKPYTLHY+TNKPE+DG FCERI
Sbjct: 1 MIEQNKHQQLRIGLASPEQICAWSEKILPNGEIVGQVTKPYTLHYETNKPERDGSFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKS +CACGN IG++K KFC QCGVEFVDSR+RRYQMGYIKLACPV HVWYLK
Sbjct: 61 FGPIKSRVCACGNSPGIGNEKIDSKFCTQCGVEFVDSRIRRYQMGYIKLACPVVHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LL K KELEG VYCD ARP+ KKPT LR RG+F YEIQSWK IP + +
Sbjct: 121 RLPSYIANLLAKTRKELEGPVYCDLFLARPIAKKPTLLRSRGTFNYEIQSWKDIIPHYLS 180
Query: 181 TQ-------GFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGE-EGSADNEN 232
+ G TF+ REI++G AI EQL LDL++I+D S +EWK L E + + EN
Sbjct: 181 ARPHYLFARGSGTFKEREIATGGDAIGEQLTGLDLQMIIDRSHMEWKNLVELKWNRLEEN 240
Query: 233 E----NEWEDRKVGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQI-D 287
+ + WED K+ RRK+FLV R++L KHF+RTNIEP+WMVL LLPVLPPE RPI+Q+ +
Sbjct: 241 QESTVDRWEDEKIRRRKDFLVGRIKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGE 300
Query: 288 GGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQ 347
GG + SSD+NELYRRVI RNNTL +LL +RS V+CQ+KL+QEAVD LLDNGI GQ
Sbjct: 301 GGLITSSDLNELYRRVINRNNTLTNLL--ARSGSESFVICQKKLIQEAVDALLDNGICGQ 358
Query: 348 PMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAI 407
PMRD H++ YKSFSD+IEGKEGRFRE LLGKRVDYSGRSVIVVGP LSL++CGLP EIAI
Sbjct: 359 PMRDSHDRPYKSFSDVIEGKEGRFRENLLGKRVDYSGRSVIVVGPFLSLYQCGLPSEIAI 418
Query: 408 ELFQTFLIRGLIRKHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGI 467
ELFQ F+IR LI +H A N+ AKS IR+K PIVWE+LQEVM+GHPVLLNRAPTLH+LGI
Sbjct: 419 ELFQAFVIRSLIGRHIAPNLRAAKSMIRDKGPIVWEVLQEVMQGHPVLLNRAPTLHKLGI 478
Query: 468 QAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPA 527
QAFQPILVEGRAI LHP VC GFNADFDGDQMAVHVPLSLEA+AEARLLMFS TNLLSPA
Sbjct: 479 QAFQPILVEGRAIRLHPSVCGGFNADFDGDQMAVHVPLSLEARAEARLLMFSETNLLSPA 538
Query: 528 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFF 587
IGDPIS+PTQDML+GLY+ T N +GI NRY+P+ ++ K K+P F
Sbjct: 539 IGDPISIPTQDMLLGLYISTVENSQGIYGNRYHPY-----------HSEKKSFSCKKPSF 587
Query: 588 CNSYDAIGAYRQKRINLDSPFWLRW-RIDQCIMSS--REVPIEVHYESFGTYYEIYGHYL 644
+ D + AYRQKRI+L SP WLRW +D I++S +E PIEV YES GT++EI+ HY
Sbjct: 588 YSYDDVLRAYRQKRIDLYSPLWLRWGELDLRIITSVNQEAPIEVQYESLGTFHEIHEHYR 647
Query: 645 VIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 679
+ + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 648 IRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
>RPOC_PINTH (P52733) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 696
Score = 897 bits (2318), Expect = 0.0
Identities = 463/695 (66%), Positives = 543/695 (77%), Gaps = 29/695 (4%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MIDQ KHQ LRIG SPEQI AW++KILPNGEIVG+VTKP+TLHY+TNKPE+DG FCERI
Sbjct: 1 MIDQNKHQQLRIGLASPEQICAWSEKILPNGEIVGQVTKPHTLHYETNKPERDGSFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSG+C+CGN IG++K KFC QCGVEFVDSR+RRYQMGYIKLACPV HVWYLK
Sbjct: 61 FGPIKSGVCSCGNSPGIGNEKIDAKFCTQCGVEFVDSRIRRYQMGYIKLACPVVHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFA 180
RLPSYIA+LL K KELEG VYCD ARP+ KPT LR RG+F+YEIQSW+ IP + +
Sbjct: 121 RLPSYIANLLAKTRKELEGPVYCDLFLARPIANKPTLLRSRGTFDYEIQSWREIIPHYLS 180
Query: 181 TQ-------GFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGE-EGSADNEN 232
+ G TF+ REI++G AI +QL+ LDL++I+D S +EWK L E + + EN
Sbjct: 181 ARPYYLFPRGSGTFKEREIATGGDAIGKQLMGLDLQMIIDRSHMEWKNLVELKWNRLEEN 240
Query: 233 E----NEWEDRKVGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQI-D 287
+ + WED K+ RRK+FLV RM+L KHF+RTNIEP+WMVL LLPVLPPE RPI+Q+ +
Sbjct: 241 QESTVDRWEDEKIRRRKDFLVGRMKLAKHFLRTNIEPKWMVLCLLPVLPPEPRPIVQLGE 300
Query: 288 GGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQ 347
GG + SSD+NELYRRVI RNNTL +LL +RS V+ Q KL+QEAVD LLDNGI Q
Sbjct: 301 GGLITSSDLNELYRRVINRNNTLTNLL--ARSGSESFVIYQTKLIQEAVDALLDNGICRQ 358
Query: 348 PMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAI 407
PMRD HN+ YKSFSD+IEGKEGRFRE LLGKRVDYSGRSVIVVGP LSL++CGLP EIAI
Sbjct: 359 PMRDSHNRPYKSFSDVIEGKEGRFRENLLGKRVDYSGRSVIVVGPFLSLYQCGLPSEIAI 418
Query: 408 ELFQTFLIRGLIRKHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGI 467
ELFQ FLIR LI +H A N+ AKS IR+K PIVWE+LQEVM+GHP+LLNRAPTLH+LGI
Sbjct: 419 ELFQAFLIRSLIGRHIAPNLRTAKSMIRDKGPIVWEVLQEVMQGHPILLNRAPTLHKLGI 478
Query: 468 QAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPA 527
QAFQPILVEGRAI LHP VC GFNADFDGDQMAVHVPLSLEA+AEARLLMFS TNLLSPA
Sbjct: 479 QAFQPILVEGRAIRLHPSVCGGFNADFDGDQMAVHVPLSLEARAEARLLMFSETNLLSPA 538
Query: 528 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFF 587
IGDPIS+PTQDML+GLY+ T N +GI NRY+P++ N K K+P F
Sbjct: 539 IGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN-----------KSFSCKKPSF 587
Query: 588 CNSYDAIGAYRQKRINLDSPFWLRW-RIDQCIMSS--REVPIEVHYESFGTYYEIYGHYL 644
+ D + AYRQKRI+L SP WLRW +D I++S +E PIEV YES GT++EI+ HY
Sbjct: 588 YSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYESLGTFHEIHEHYR 647
Query: 645 VIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 679
+ + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 648 IRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
>RPOC_PSINU (Q8WI25) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 674
Score = 889 bits (2297), Expect = 0.0
Identities = 436/689 (63%), Positives = 544/689 (78%), Gaps = 22/689 (3%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MI + +Q LRIG SPEQI AWA++ILP GEIVG+VT+PYTLHYKT+KPE+DGLFCERI
Sbjct: 1 MIHKNNYQQLRIGLASPEQIRAWAERILPTGEIVGKVTQPYTLHYKTHKPERDGLFCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGPIKSG CACGNY+ + + K+ FC+QCGVEF +SRVRRYQMGYI+LACPVTHVWYLK
Sbjct: 61 FGPIKSGFCACGNYQAVDNGKEFSSFCKQCGVEFTESRVRRYQMGYIELACPVTHVWYLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCDFSF-----ARPVVKKPTFLRLRGSFEYEIQSWKYSI 175
RLPSYIA+LL KPL +LE LVYCD ++ ARP+ +KPT L+L+G F+YE QSW+Y
Sbjct: 121 RLPSYIANLLAKPLNDLESLVYCDITYPNLYLARPIAEKPTLLQLKGFFKYEDQSWRYLF 180
Query: 176 PLFFATQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENE 235
P FF+T+GF+ F++REI++G A+R++L L+L+ +M+ + +EWK+L ++ NE
Sbjct: 181 PRFFSTRGFEAFKSREIATGGDAVRKELASLNLKTVMECTYLEWKDLAKQ----KPTGNE 236
Query: 236 WEDRKVGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSD 295
WEDR + R K+F+VRR+ LVKHF+ T+++PEWMVLSLLPVLPPELRP+I++ GG L++SD
Sbjct: 237 WEDRGIQRIKDFMVRRIRLVKHFLYTDVKPEWMVLSLLPVLPPELRPMIEVSGGLLLTSD 296
Query: 296 INELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNK 355
+NELYR+VIYRNNTLID L S TP L++CQ++LVQEAVD L+DNGIRGQP+RD HN+
Sbjct: 297 LNELYRKVIYRNNTLIDFLLRSEFTPEGLIVCQKRLVQEAVDALIDNGIRGQPIRDSHNR 356
Query: 356 VYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLI 415
YKSFSDIIEGKEGRFRE LLGKRVDYSGRSVIVVGPSL LHRCGLPRE+AIELFQ F+I
Sbjct: 357 PYKSFSDIIEGKEGRFRENLLGKRVDYSGRSVIVVGPSLPLHRCGLPREMAIELFQAFVI 416
Query: 416 RGLIRKHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILV 475
RGLI ++ A N+ AK+ I+ KEPI+W+IL++VM+GHPVLLNRAPTLHRLGIQAFQPIL+
Sbjct: 417 RGLIGRYLAQNLRDAKNMIQNKEPIIWKILRDVMQGHPVLLNRAPTLHRLGIQAFQPILI 476
Query: 476 EGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVP 535
EGRAI LHPLVC GFNADFDGDQMAVHVPLSLEAQAEAR LM SHTNLLSPA GDPI+VP
Sbjct: 477 EGRAIRLHPLVCGGFNADFDGDQMAVHVPLSLEAQAEARFLMLSHTNLLSPATGDPIAVP 536
Query: 536 TQDMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIG 595
TQDML+GL++LT + +GI RY P++ RN + K P+F + D +
Sbjct: 537 TQDMLLGLHILTIEDSQGIYGVRYFPYSKRNCTS-----------FFKIPYFNSYDDVLR 585
Query: 596 AYRQKRINLDSPFWLRWRIDQCIMSS--REVPIEVHYESFGTYYEIYGHYLVIRSIKKEI 653
A Q++I+ SP WLRW+ +++S RE PIE+ YES IY +Y + + K
Sbjct: 586 AKEQRQIHFYSPIWLRWKGFLRVITSINREFPIEIQYESSNISVHIYENYQIRKDKKGNR 645
Query: 654 RCIYIRTTVGHISFYREIEEAIQGFSRAY 682
+YIRTT G + F ++IEEAIQG +A+
Sbjct: 646 LSLYIRTTAGRVLFNQQIEEAIQGTLKAF 674
>RPOC_ADICA (Q85FM8) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta'
subunit) (RNA polymerase beta' subunit)
Length = 698
Score = 806 bits (2083), Expect = 0.0
Identities = 403/691 (58%), Positives = 518/691 (74%), Gaps = 22/691 (3%)
Query: 1 MIDQYKHQHLRIGSVSPEQISAWAKKILPNGEIVGEVTKPYTLHYKTNKPEKDGLFCERI 60
MI + +Q LRIG SPEQI +WA++ LPNG+++G+V PYT HYKT+KPE+DG CERI
Sbjct: 1 MIHRTNYQQLRIGLASPEQIRSWAERELPNGDVIGQVDXPYTSHYKTHKPERDGSSCERI 60
Query: 61 FGPIKSGICACGNYRVIGDKKDQPKFCEQCGVEFVDSRVRRYQMGYIKLACPVTHVWYLK 120
FGP KSG+CACGN R + D+ + +FC+ CGVEF DSRVRRY+MGYIKLACPVTHVW+LK
Sbjct: 61 FGPTKSGVCACGNCRSVNDEGESSRFCKHCGVEFTDSRVRRYRMGYIKLACPVTHVWFLK 120
Query: 121 RLPSYIASLLDKPLKELEGLVYCD----FSFARPVVKKPTFLRLRGSFEYEIQSWKYSIP 176
R+PSYIA+LL KPLKELE VYCD ARPV ++P LRLRG F YE ++W+ +P
Sbjct: 121 RIPSYIANLLAKPLKELESPVYCDTYPNLFLARPVAERPALLRLRGLFNYEDRAWRNILP 180
Query: 177 LFFATQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSADNENENEW 236
FF+TQ ++ R EI +G AIRE L LDL+ ++ + +EW+ ++ E W
Sbjct: 181 TFFSTQNYEMLRKNEIVTGGDAIREGLASLDLQSFLNCAYLEWQASVKQKPVGIE----W 236
Query: 237 EDRKVGRRKNFLVRRMELVKHFIRTNIEPEWMVLSLLPVLPPELRPIIQIDGGKLMSSDI 296
EDR + RRK+ L+RR++L K F+RTN++PEWMVL +PVLPPELRPI+++ G+L++SD+
Sbjct: 237 EDRTIRRRKDLLIRRIKLAKDFLRTNMKPEWMVLYFIPVLPPELRPIVELYEGELITSDL 296
Query: 297 NELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKV 356
NELYR++IYRNNTL + L+ S TP L++CQ++LVQEAVD L+ +GIRGQPMRD HN+
Sbjct: 297 NELYRKIIYRNNTLREFLSGSEFTPEGLIVCQKRLVQEAVDALIGSGIRGQPMRDIHNRP 356
Query: 357 YKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIR 416
YKSFS++IEGKEGRFRE LLGKRVDYSGRSVIVVGPSLSLH+CGLPRE+AIELFQ F+IR
Sbjct: 357 YKSFSEVIEGKEGRFRENLLGKRVDYSGRSVIVVGPSLSLHQCGLPREMAIELFQAFVIR 416
Query: 417 GLIRKHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVE 476
LI H A N+ AK IR+ PI+WE+L+EVMRGHPVLLNRAPTLHRLGIQAFQP+L+E
Sbjct: 417 NLIGXHLACNLRAAKCMIRKGNPIIWEVLREVMRGHPVLLNRAPTLHRLGIQAFQPLLIE 476
Query: 477 GRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPT 536
GRAI LHPLV G NAD DGDQMAVHVPLS+EAQ EARLLMFSH NLLSPA GDP+SVP+
Sbjct: 477 GRAIRLHPLVRGGSNADLDGDQMAVHVPLSVEAQIEARLLMFSHLNLLSPATGDPVSVPS 536
Query: 537 QDMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNNNSKYMKKKEPFFCNSYDAIGA 596
QDML+GLY LT +R+GI NR+ F ++++ ++K + F + D + A
Sbjct: 537 QDMLLGLYALTIESRQGIYRNRHLGF------IDRVNVYSTKLL-----HFSSYCDLLRA 585
Query: 597 YRQKRINLDSPFWLRWRIDQCIMSS--REVPIEVHYESFGTYYEIYGHYLVIRSIKKEIR 654
++++ S WLRW+ID I+SS RE+ E HYES GT + Y + + + I
Sbjct: 586 KESRQVDSHSLLWLRWKIDLQIISSKIRELSSESHYESSGTSFHFYENCRIRKCRDGSIS 645
Query: 655 CIYIRTTVGHISFYREIEEAIQGFSR-AYSY 684
+Y+ TT G I F ++++EA+QG S+ ++SY
Sbjct: 646 SMYVLTTAGRILFNQQLKEAMQGVSKNSFSY 676
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.141 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,584,338
Number of Sequences: 164201
Number of extensions: 3870922
Number of successful extensions: 9076
Number of sequences better than 10.0: 226
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8115
Number of HSP's gapped (non-prelim): 345
length of query: 686
length of database: 59,974,054
effective HSP length: 117
effective length of query: 569
effective length of database: 40,762,537
effective search space: 23193883553
effective search space used: 23193883553
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)
Medicago: description of AC126018.19