BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126015.11 + phase: 0
(371 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YF92_SYNY3 (P72970) Hypothetical pseudouridine synthase slr1592 ... 194 2e-49
YG29_SYNY3 (P74346) Hypothetical pseudouridine synthase slr1629 ... 126 8e-29
YH58_AQUAE (O67638) Hypothetical pseudouridine synthase AQ_1758 ... 117 4e-26
RLUD_PSEAE (P33640) Ribosomal large subunit pseudouridine syntha... 117 4e-26
YLYB_BACSU (Q45480) Hypothetical pseudouridine synthase ylyB (EC... 117 6e-26
RLUD_VIBVU (Q8DEV0) Ribosomal large subunit pseudouridine syntha... 115 2e-25
RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine syntha... 114 3e-25
YHCT_BACSU (P54604) Hypothetical pseudouridine synthase yhcT (EC... 111 3e-24
RLUD_VIBPA (Q87S65) Ribosomal large subunit pseudouridine syntha... 111 3e-24
RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine syntha... 107 5e-23
RLUD_NITEU (Q82WZ5) Ribosomal large subunit pseudouridine syntha... 106 1e-22
RLUD_NEIMA (Q9JVB6) Ribosomal large subunit pseudouridine syntha... 106 1e-22
RLUD_NEIMB (Q9K0B0) Ribosomal large subunit pseudouridine syntha... 105 2e-22
RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine syntha... 104 3e-22
RLUD_VIBCH (Q9KU20) Ribosomal large subunit pseudouridine syntha... 103 9e-22
RLUD_BUCAI (P57481) Ribosomal large subunit pseudouridine syntha... 99 1e-20
RLUD_XANCP (Q8P682) Ribosomal large subunit pseudouridine syntha... 96 1e-19
RLUD_BUCAP (Q8K9E9) Ribosomal large subunit pseudouridine syntha... 96 1e-19
RLUD_XANAC (Q8PHN2) Ribosomal large subunit pseudouridine syntha... 96 2e-19
Y209_MYCGE (P47451) Hypothetical pseudouridine synthase MG209 (E... 95 2e-19
>YF92_SYNY3 (P72970) Hypothetical pseudouridine synthase slr1592 (EC
4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase)
Length = 291
Score = 194 bits (494), Expect = 2e-49
Identities = 125/328 (38%), Positives = 180/328 (54%), Gaps = 48/328 (14%)
Query: 33 LIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAP 92
+++FYS +Y S Q W +RI+ QI +D + V DP L+ G L Y R PW EP+ P
Sbjct: 1 MLDFYSQRYLHSER-QAWQERIEQGQIEVDGKTV-DPTYPLQAGQTLTYWRSPWVEPEVP 58
Query: 93 HTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVH 152
+ VL+ D+D+ A++KPSGL VLPGG F TVL QL+ + +S P+H
Sbjct: 59 LQLSVLHRDEDLWAIDKPSGLPVLPGGDFVYHTVLEQLKIQYPQESLF---------PLH 109
Query: 153 RLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIIN 212
RLG GTSG+LL ++ L R L+ F + R KIYR ++
Sbjct: 110 RLGTGTSGLLLLGRSTLGRRELSRQFREHICR----------------KIYRTVIGPCDL 153
Query: 213 NDQVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPH 272
++ +Q IG + YP + +Y AS GKPA S +L R+ ++ T ++V+I++GRPH
Sbjct: 154 PEKFECHQAIGKIPYPQLGY-IYAASSHGKPAQSYGRILARSPEK--TWLEVEIRTGRPH 210
Query: 273 QIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHA 332
QIRIHL+ +G+PLLGD LY GG P ++C R ++ P D GY LH+
Sbjct: 211 QIRIHLASLGYPLLGDRLYGPGGVP--INC--------------RTAR--PSDGGYTLHS 252
Query: 333 HRLFLSHPITNEIIEMIAPLPSILQTHE 360
++L H T + I++ APLP L T E
Sbjct: 253 YQLGFLHLHTQQAIKLTAPLPPELITPE 280
>YG29_SYNY3 (P74346) Hypothetical pseudouridine synthase slr1629 (EC
4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase)
Length = 327
Score = 126 bits (317), Expect = 8e-29
Identities = 96/306 (31%), Positives = 149/306 (48%), Gaps = 51/306 (16%)
Query: 54 IKSDQITLDARVVTDPNTILRVGSKLVYH---RIPWKEPDAPHTIEVLYEDDDIIALNKP 110
I+S Q+ + V D N IL+ G +LV + IP +++LYED+ +I +NKP
Sbjct: 54 IESGQVQRNGLVCQDKNLILKTGDRLVVNIPELIPLDVVAQNIPLDILYEDEQLIIINKP 113
Query: 111 SGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLA 170
+GL V PG TV+ L + + I Q+P V HRL + T+G ++ AKT+LA
Sbjct: 114 AGLVVHPGPGHPDGTVVNALLAHCPDLAGIGGVQRPGIV--HRLDKDTTGAMVVAKTELA 171
Query: 171 RARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGV 230
L + T+R ++Y +V G Q T+N P+G ++PG
Sbjct: 172 LHNLQVQLKEKTAR----------------RLYWGIVYGSPKEIQGTVNLPVG--RHPGD 213
Query: 231 AK--GLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGD 288
+ G+ + G+ A++ +LER N + ++ ++++GR HQIR+H +GHPL+GD
Sbjct: 214 RQKMGIVPVEKGGREAVTHWRLLERI--GNHSWLEFQLETGRTHQIRVHSKQMGHPLVGD 271
Query: 289 PLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEM 348
L YT P G LHAH+L L HP++ EII
Sbjct: 272 NL------------------------YTSPGSVNVNLPGQALHAHQLSLIHPVSGEIITA 307
Query: 349 IAPLPS 354
IAP+P+
Sbjct: 308 IAPMPA 313
>YH58_AQUAE (O67638) Hypothetical pseudouridine synthase AQ_1758 (EC
4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase)
Length = 316
Score = 117 bits (294), Expect = 4e-26
Identities = 80/244 (32%), Positives = 124/244 (50%), Gaps = 30/244 (12%)
Query: 54 IKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEP------DAPHTIEVLYEDDDIIAL 107
+K + ++ V P+ LR G +++ H +P EP + P I ++YED+DI +
Sbjct: 38 VKEGLVYVNGEEVRKPSRKLREGERVILH-VPEPEPLDVKPENIP--INIIYEDEDIAVV 94
Query: 108 NKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKT 167
KP GL V P + T++ L + + S+I ++P V HRL + T+G+++ AK
Sbjct: 95 EKPCGLVVHPSPGYTSGTLVNALLYHIKDLSSIGGVERPGIV--HRLDKETAGVMVIAKN 152
Query: 168 KLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKY 227
A L F + K K Y+ LV G++ D I+ PI ++
Sbjct: 153 NTAHRNLVRQFQER----------------KTEKFYKVLVKGLVKKDYGAIDTPIA--RH 194
Query: 228 PGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLG 287
P K +V + GK AL+ VL+R K TL++VKI +GR HQIR+H + IGHP+LG
Sbjct: 195 PVDRKRFWVRKE-GKEALTEYWVLKRYEKYEITLLKVKIHTGRTHQIRVHFASIGHPVLG 253
Query: 288 DPLY 291
D Y
Sbjct: 254 DRTY 257
>RLUD_PSEAE (P33640) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 320
Score = 117 bits (294), Expect = 4e-26
Identities = 97/316 (30%), Positives = 155/316 (48%), Gaps = 51/316 (16%)
Query: 43 SSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYH-----RIPWKEPDAPHTIEV 97
S + L GW IK ++T+D V+ P I+ G++LV + W D +E+
Sbjct: 32 SRSRLAGW---IKDGRLTVDGAVLR-PRDIVHSGAQLVLEAEQEAQGEWLAQDIE--LEI 85
Query: 98 LYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRG 157
+YED+ I+ ++KP+GL V P Q T+L L + + + + P VHRL +
Sbjct: 86 VYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANV-----PRAGIVHRLDKD 140
Query: 158 TSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVT 217
T+G+++ AKT A +L + + +++IY A+V G+I + T
Sbjct: 141 TTGLMVVAKTLEAHTKLVAQL----------------QARSVSRIYEAIVIGVITSGG-T 183
Query: 218 INQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIH 277
I+ PIG GV + +GK A+S VLER T +VK+++GR HQIR+H
Sbjct: 184 IDAPIGR---HGVQRQKMAVVDAGKVAVSHYRVLERFRAHTHT--RVKLETGRTHQIRVH 238
Query: 278 LSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFL 337
+S IG+PL+GDP+Y + + L ++ E + R + LHA L L
Sbjct: 239 MSHIGYPLVGDPVYGGRFRIPPVASQTLVQTLRE---FPRQA----------LHARFLEL 285
Query: 338 SHPITNEIIEMIAPLP 353
HP T ++ +PLP
Sbjct: 286 DHPATGVRMKWESPLP 301
>YLYB_BACSU (Q45480) Hypothetical pseudouridine synthase ylyB (EC
4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase)
Length = 303
Score = 117 bits (292), Expect = 6e-26
Identities = 93/317 (29%), Positives = 147/317 (46%), Gaps = 62/317 (19%)
Query: 43 SSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDA------PHTIE 96
S +Q W +K Q+ ++ V N ++ G ++ + EP+A P ++
Sbjct: 29 SRTQVQQW---VKDGQVVVNGSAVK-ANYKIQPGDQVT---VTVPEPEALDVLAEPMDLD 81
Query: 97 VLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGR 156
+ YED D++ +NKP G+ V P T++ L + S I +P V HR+ +
Sbjct: 82 IYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCTDLSGINGVMRPGIV--HRIDK 139
Query: 157 GTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQV 216
TSG+L+ AK +A L + + T + + Y A+V G+I++D
Sbjct: 140 DTSGLLMVAKNDMAHESLVNQLVNKT----------------VTRKYTAVVHGLISHDDG 183
Query: 217 TINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRI 276
TI+ PIG K + ++ GK A++ HVLE ++ TLV+ ++++GR HQIR+
Sbjct: 184 TIDAPIGRDKKD---RQSMTVTRDGKNAVTHFHVLEGF--QDFTLVECQLETGRTHQIRV 238
Query: 277 HLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLF 336
H+ +IG PL GDP Y G K +D + G LHA L
Sbjct: 239 HMKYIGFPLAGDPKY---GPRKTIDFN-----------------------GQPLHAGVLG 272
Query: 337 LSHPITNEIIEMIAPLP 353
HP T E +E APLP
Sbjct: 273 FDHPRTGEYVEFEAPLP 289
>RLUD_VIBVU (Q8DEV0) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 325
Score = 115 bits (287), Expect = 2e-25
Identities = 99/331 (29%), Positives = 157/331 (46%), Gaps = 50/331 (15%)
Query: 43 SSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVY-----HRIPWKEPDAPHTIEV 97
S + L+ WL ++T+D VVT P T + G + + W+ D P +++
Sbjct: 32 SRSRLKEWLL---DGKVTVDGNVVTKPRTKVMGGEVITVLAELEDEVRWEAQDIP--LDI 86
Query: 98 LYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRG 157
+YEDDDI+ +NKP V PG TVL L + E + P VHRL +
Sbjct: 87 VYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLFHCP-----EVAEVPRAGIVHRLDKD 141
Query: 158 TSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVT 217
T+G+++ AKT A+ RL + R+ +E IA I R G
Sbjct: 142 TTGLMVVAKTVPAQTRLVRAL---------QKRNITREYEAIA-IGRMTAGG-------K 184
Query: 218 INQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIH 277
+++PIG + L S GKPA++ V E + +E+ T +++++++GR HQIR+H
Sbjct: 185 VDKPIGR---HATKRTLMAVSPMGKPAVTHFRVAE-HFREH-TRIRLRLETGRTHQIRVH 239
Query: 278 LSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFL 337
+S++ HPLLGD Y GG+ + + ++ A + R + LHA L
Sbjct: 240 MSYLQHPLLGDAAY--GGRAR-IPAGASEDVTAMIRNFDRQA----------LHAVMLRF 286
Query: 338 SHPITNEIIEMIAPLPSILQTHEEAIAQAQQ 368
HPIT E +E AP+P + E + + Q
Sbjct: 287 EHPITGEEMEFHAPVPDDMVELTETLRRDAQ 317
>RLUD_HAEIN (P44445) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 324
Score = 114 bits (286), Expect = 3e-25
Identities = 101/342 (29%), Positives = 162/342 (46%), Gaps = 62/342 (18%)
Query: 24 VRPSDAGLTLIEFYSTKYK--SSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKL-- 79
V+P G L + + + S + L+ W I++D + L+ R+ P + G ++
Sbjct: 10 VQPEQMGQRLDQTLAELFPEYSRSRLKTW---IEADLVKLNDRITNIPREKVLGGERIEI 66
Query: 80 ---VYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNN 136
V ++ + P + ++YEDDDII +NKP L V PG TVL L + +
Sbjct: 67 IVEVEDETRFEAENIP--LNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLY--HY 122
Query: 137 KSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQEL 196
+E P VHRL + T+G+++ AKT A+ +L + +
Sbjct: 123 PPIVEV---PRAGIVHRLDKDTTGLMVVAKTIPAQTKLVR----------------DLQK 163
Query: 197 GKIAKIYRALVSGIINNDQVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVK 256
KI + Y A+ SGI+ T++QP+ + L GKPA++ ++E
Sbjct: 164 RKITREYEAVASGIMTKGG-TVDQPMAR---HATKRTLMAVHPMGKPAVTHYRIMENY-- 217
Query: 257 ENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQ---PKCLDCDFLD--ESFAE 311
N T +++++++GR HQIR+H++ I HPLLGD Y GG+ PK DF++ +F
Sbjct: 218 RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQTY--GGRPRPPKNASEDFMEVLRNFKR 275
Query: 312 DGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAPLP 353
LHA L L+HPIT E++E APLP
Sbjct: 276 QA----------------LHAVMLRLAHPITGEMMEWYAPLP 301
>YHCT_BACSU (P54604) Hypothetical pseudouridine synthase yhcT (EC
4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase)
Length = 302
Score = 111 bits (278), Expect = 3e-24
Identities = 98/349 (28%), Positives = 162/349 (46%), Gaps = 73/349 (20%)
Query: 17 GLSYDDVVRPSDAGLTLIEFYSTKYKSSAP-LQGWLQRIKSDQITLDARVVTDPNTILRV 75
G + ++ G L T K+S P +Q W+ QI ++ V + N I++
Sbjct: 5 GRGLEILINEKQDGQWLFSVLKTALKASKPVIQDWMSH---QQIKVNHESVLN-NMIVKK 60
Query: 76 GSKLVYHRIPWKEPDAPHTI------EVLYEDDDIIALNKPSGLQVLPGGLFQQRTV--L 127
G ++ I +E +A I ++L+ED+ ++ +NKP+G+ P Q T+ L
Sbjct: 61 GDRVF---IDLQESEASSVIPEYGELDILFEDNHMLIINKPAGIATHPNEDGQTGTLANL 117
Query: 128 TQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLARARLASYFADGTSRIEG 187
++ N ++ H VHRL + TSG ++ AK +LA A L
Sbjct: 118 IAYHYQINGETCKVRH-------VHRLDQDTSGAIVFAKHRLAHAIL------------- 157
Query: 188 KGRHTNQELGK--IAKIYRALVSGIINNDQVTINQPIGMVKYPGVAKGLYVASQSGKPAL 245
+Q+L K + + Y A+ G + + TIN PIG + + + S G+ A+
Sbjct: 158 -----DQQLEKKTLKRTYTAIAEGKLRTKKGTINPPIGRDRSHPTRRRV---SPGGQTAV 209
Query: 246 SVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFL 305
+ V+ N KE +LV++++++GR HQIR+HL+ +GHPL GD LY GG K L+
Sbjct: 210 THFKVMASNAKERLSLVELELETGRTHQIRVHLASLGHPLTGDSLY--GGGSKLLN---- 263
Query: 306 DESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAPLPS 354
LHA+++ HPIT+E+I AP P+
Sbjct: 264 ---------------------RQALHANKVQAVHPITDELIVAEAPFPA 291
>RLUD_VIBPA (Q87S65) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 325
Score = 111 bits (277), Expect = 3e-24
Identities = 97/326 (29%), Positives = 152/326 (45%), Gaps = 50/326 (15%)
Query: 43 SSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYH-----RIPWKEPDAPHTIEV 97
S + L+ WL ++ ++ VVT P T + G ++ W+ D P +++
Sbjct: 32 SRSRLKEWLL---DGKVQVNGEVVTKPRTKVMGGEEITLQAELEDEERWEAQDIP--LDI 86
Query: 98 LYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRG 157
+YEDDDII +NKP V PG TVL L + + + P VHRL +
Sbjct: 87 VYEDDDIIVINKPRDFVVHPGAGTPDGTVLNALLHHYPDIAEV-----PRAGIVHRLDKD 141
Query: 158 TSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVT 217
T+G+++ AKT A+ RL + R+ +E IA I R G
Sbjct: 142 TTGLMVVAKTVPAQTRLVRAL---------QKRNITREYEAIA-IGRMTAGG-------K 184
Query: 218 INQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIH 277
++QPIG + L + GKPA++ V E + +E+ T +++++++GR HQIR+H
Sbjct: 185 VDQPIGR---HSTKRTLMAVAPLGKPAVTHYRVAE-HFREH-TRIRLRLETGRTHQIRVH 239
Query: 278 LSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFL 337
+S++ HPLLGD Y GG+ + G + + G LHA L
Sbjct: 240 MSYLQHPLLGDTAY--GGRAR-----------IPTGASQELTDMIRGFDRQALHAVMLRF 286
Query: 338 SHPITNEIIEMIAPLPSILQTHEEAI 363
HPIT E +E AP+P + EA+
Sbjct: 287 EHPITGEELEFHAPVPDDMVAMTEAL 312
>RLUD_PASMU (Q9CKA6) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 324
Score = 107 bits (267), Expect = 5e-23
Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 40/260 (15%)
Query: 95 IEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRL 154
+ ++YEDDDI+ +NKP V PG TVL L + + + P VHRL
Sbjct: 83 LNIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLYHYPAIAEV-----PRAGIVHRL 137
Query: 155 GRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINND 214
+ T+G+++ AKT A+ +L + + KI + Y A+ GI+
Sbjct: 138 DKDTTGLMVIAKTIPAQTKLVR----------------DLQKRKITREYEAIACGIMTKG 181
Query: 215 QVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQI 274
+ ++QP M ++P + V GKPA++ ++ER N T +++++++GR HQI
Sbjct: 182 GM-VDQP--MARHPTKRTHMAVHPM-GKPAVTHYRIMERF--RNYTRLRLRLETGRTHQI 235
Query: 275 RIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHR 334
R+H++ I HPLLGD Y GG+P+ + +E + R + LHA
Sbjct: 236 RVHMAHIAHPLLGDQTY--GGRPRPPK-NASEELMQTLRDFKRQA----------LHAIM 282
Query: 335 LFLSHPITNEIIEMIAPLPS 354
L L+HPIT E++E APLP+
Sbjct: 283 LRLAHPITGELMEWHAPLPT 302
>RLUD_NITEU (Q82WZ5) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 344
Score = 106 bits (264), Expect = 1e-22
Identities = 103/331 (31%), Positives = 151/331 (45%), Gaps = 65/331 (19%)
Query: 43 SSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIE-----V 97
S + LQGW+++ +++D+ T + G + + E D H E +
Sbjct: 57 SRSRLQGWIEQ---KCVSVDSAAATCKQKVW--GGESIRVIAGQTENDQSHQAEAIPLKI 111
Query: 98 LYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRG 157
L+EDD +I ++KP+GL V PG T+L L S Q P VHRL +
Sbjct: 112 LFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLS-----QVPRAGIVHRLDKD 166
Query: 158 TSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVT 217
T+G+L+ AKT A+ LA T + RH Y ALV G + D V
Sbjct: 167 TTGLLVVAKTIEAQFDLARQLQQRTVK-----RH-----------YLALVLGKLEKDGV- 209
Query: 218 INQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIH 277
++ PIG ++P + + Q+GKPA + VLE+ STL+ +++GR HQIR+H
Sbjct: 210 VDAPIG--RHP-IHRTRMAVVQNGKPARTHYRVLEKFTA--STLLHCSLETGRTHQIRVH 264
Query: 278 LSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYH-----LHA 332
L IGHPL GDP+Y G T P P D LHA
Sbjct: 265 LLSIGHPLAGDPVY----------------------GRTSPD-PSTADAVVRLPRQALHA 301
Query: 333 HRLFLSHPITNEIIEMIAPLPSILQTHEEAI 363
+L L+HP + +I+ +PLP + +AI
Sbjct: 302 WQLELTHPHSGQILLWESPLPDDMAALLQAI 332
>RLUD_NEIMA (Q9JVB6) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 374
Score = 106 bits (264), Expect = 1e-22
Identities = 83/262 (31%), Positives = 124/262 (46%), Gaps = 41/262 (15%)
Query: 92 PHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPV 151
P ++++YEDD +I +NKP+GL V P T+L L S I P V
Sbjct: 102 PMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQI-----PRAGIV 156
Query: 152 HRLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGII 211
HRL + TSG+++ AKT A+ L + T + +IYRA+ +GI+
Sbjct: 157 HRLDKETSGLMVVAKTLPAQNSLVWQLQERT----------------VKRIYRAVANGIV 200
Query: 212 NNDQVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRP 271
D I IG + P + V GKPA++ V VLER + + ++ +++GR
Sbjct: 201 PFDG-KIETQIG--RDPHNRLKMAVVKFGGKPAVTHVKVLERYLAHS--YIECSLETGRT 255
Query: 272 HQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLH 331
HQIR+H+ HPL GDP+Y G P+ D + E+ G LH
Sbjct: 256 HQIRVHMREANHPLAGDPVY---GNPRHPCGDTVKEAVKSLGARQA------------LH 300
Query: 332 AHRLFLSHPITNEIIEMIAPLP 353
A+RL +HP + E + AP+P
Sbjct: 301 AYRLSFTHPESGETVSFEAPIP 322
>RLUD_NEIMB (Q9K0B0) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 374
Score = 105 bits (262), Expect = 2e-22
Identities = 82/263 (31%), Positives = 124/263 (46%), Gaps = 41/263 (15%)
Query: 92 PHTIEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPV 151
P ++++YEDD +I +NKP+GL V P T+L L E Q P V
Sbjct: 102 PMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCP-----ELSQVPRAGIV 156
Query: 152 HRLGRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGII 211
HRL + TSG+++ AKT A+ L + T + +IYRA+ +GI+
Sbjct: 157 HRLDKETSGLMVVAKTLPAQNSLVRQLQERT----------------VKRIYRAVANGIV 200
Query: 212 NNDQVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRP 271
D I IG + P + V GKPA++ V VLER + + ++ +++GR
Sbjct: 201 PFDG-KIETQIG--RDPHNRLKMAVVKFGGKPAVTHVKVLERYLTHS--YIECSLETGRT 255
Query: 272 HQIRIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLH 331
HQIR+H+ HPL DP+Y G P+ D + E+ G LH
Sbjct: 256 HQIRVHMREANHPLAADPVY---GNPRHPCGDTVKEAVKSLGARQA------------LH 300
Query: 332 AHRLFLSHPITNEIIEMIAPLPS 354
A+RL +HP + E + AP+P+
Sbjct: 301 AYRLSFTHPESGETVSFEAPIPN 323
>RLUD_HAEDU (Q9L7A7) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 325
Score = 104 bits (260), Expect = 3e-22
Identities = 83/261 (31%), Positives = 130/261 (49%), Gaps = 42/261 (16%)
Query: 95 IEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRL 154
+ +++EDDDII +NKP L V PG TVL L + + + P +HRL
Sbjct: 84 LNIVHEDDDIIIINKPKNLVVHPGAGNPDGTVLNALLYYYPPIAEV-----PRAGIIHRL 138
Query: 155 GRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINND 214
+ T+G+++ AK A+ L T + +I + Y A+ SGI+
Sbjct: 139 DKDTTGLMVVAKNIPAQTHLV----------------TALQKRRITREYEAIASGIMTQG 182
Query: 215 QVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQI 274
+++P M ++P + V GKPA++ ++ER N T +++++++GR HQI
Sbjct: 183 G-KVDEP--MARHPTKRTAMAVHPM-GKPAITHYRIMERF--RNYTRLRLRLETGRTHQI 236
Query: 275 RIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAED-GGYTRPSKPVPGDCGYHLHAH 333
R+H++ I HPLLGD LY GG+P+ E+F + R + LHA
Sbjct: 237 RVHMAHIAHPLLGDQLY--GGRPRPPKGS--SEAFLTVLRAFQRQA----------LHAT 282
Query: 334 RLFLSHPITNEIIEMIAPLPS 354
L L HPI E+IE APLP+
Sbjct: 283 MLRLEHPINGELIECHAPLPA 303
>RLUD_VIBCH (Q9KU20) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 324
Score = 103 bits (256), Expect = 9e-22
Identities = 90/316 (28%), Positives = 147/316 (46%), Gaps = 50/316 (15%)
Query: 43 SSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYH-----RIPWKEPDAPHTIEV 97
S + L+ WL K I ++ V+T P T + G + W+ D P + +
Sbjct: 32 SRSRLKEWLLEGK---IAVNGDVITKPRTKVMGGEVITVQAELEDEQRWEAQDLP--LNI 86
Query: 98 LYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRG 157
+YEDDDII +NKP V PG +TVL L + + + + P VHRL +
Sbjct: 87 VYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLFHYSPIAEV-----PRAGIVHRLDKD 141
Query: 158 TSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVT 217
T+G+++ AKT A+ RL + + + Y A+V G + +
Sbjct: 142 TTGLMVVAKTVPAQTRLVRAL----------------QKRDVTREYEAIVIGTMTAGGM- 184
Query: 218 INQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIH 277
I++PIG + L S GK A++ V E + +E++ L ++++++GR HQIR+H
Sbjct: 185 IDKPIGR---HSTKRTLMSVSPMGKHAVTHYRVAE-HFREHTRL-RLRLETGRTHQIRVH 239
Query: 278 LSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFL 337
++++ HPLLGD Y GG+ + G ++ + LHA L
Sbjct: 240 MAYLQHPLLGDTAY--GGRAR-----------IPKGATEELTEMIRDFDRQALHAVMLKF 286
Query: 338 SHPITNEIIEMIAPLP 353
HP+T E +E AP+P
Sbjct: 287 EHPVTGEELEFHAPVP 302
>RLUD_BUCAI (P57481) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 312
Score = 99.4 bits (246), Expect = 1e-20
Identities = 87/306 (28%), Positives = 138/306 (44%), Gaps = 47/306 (15%)
Query: 57 DQITLDARVVTDPNTILRVGSKLVYHRIPWKEP---DAPHTI--EVLYEDDDIIALNKPS 111
+Q+ ++ +V P+ + G L H P+ + D P I +++YED DI+ +NKP+
Sbjct: 43 NQVLVNESIVNQPDKKILGGETLTIH--PFSKDLLVDIPENIFLDIVYEDSDILIINKPA 100
Query: 112 GLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTKLAR 171
GL V PG + T+L L + N + P VHRL + TSG+++ AK +
Sbjct: 101 GLVVHPGSGNKSGTILNALLYHYKNSKDL-----PRAGIVHRLDKDTSGLMVIAKNIFSY 155
Query: 172 ARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMVKYPGVA 231
L + KI + Y +V G + TIN+PI M Y
Sbjct: 156 NHLLLLLKEK----------------KIIREYEGIVHGKMIAGG-TINKPI-MRHYN--R 195
Query: 232 KGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSFIGHPLLGDPLY 291
+ + GKP+++ VL R + T + +++++GR HQIR+H+ I +PL+GDP Y
Sbjct: 196 RTCMMVHHLGKPSVTHYKVLSRF--KFHTHIAIRLETGRTHQIRVHMLHIKYPLVGDPCY 253
Query: 292 AVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAP 351
+ F +S T P LHA+ L L HPI ++ P
Sbjct: 254 S----------GFKIQSNYRKDKKTNKIYKFPRQA---LHANHLSLHHPIKKNVMSWTVP 300
Query: 352 LPSILQ 357
LP +Q
Sbjct: 301 LPQDIQ 306
>RLUD_XANCP (Q8P682) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 331
Score = 96.3 bits (238), Expect = 1e-19
Identities = 95/325 (29%), Positives = 147/325 (45%), Gaps = 45/325 (13%)
Query: 43 SSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTI--EVLYE 100
S + L W IKS LD +T+ + V + + AP I VLYE
Sbjct: 39 SRSRLSEW---IKSGDALLDGETARPRDTLRGGETVQVQVVLETQTHAAPQDIPLNVLYE 95
Query: 101 DDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSG 160
DD ++ ++KP+GL V PG T++ L + N + + P VHRL + TSG
Sbjct: 96 DDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAAV-----PRAGVVHRLDKDTSG 150
Query: 161 ILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQ 220
+++ A+T A+ L + R +++ +A + ALVSG T +
Sbjct: 151 VMVVARTLQAQTALVEQLS---------ARDVHRQY--LAVVVGALVSG------GTADA 193
Query: 221 PIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSF 280
PI ++P + V G+ A V H R T ++ ++++GR HQIR+H++
Sbjct: 194 PID--RHPRDRLKMAVRDD-GRDA--VTHYRLRERFRAHTALECRLETGRTHQIRVHMAH 248
Query: 281 IGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHP 340
+ P++GDPLY GG K L D AE G+ R + LHA L HP
Sbjct: 249 LKSPIVGDPLY--GGALK-LPKGATDTLVAELRGFKRQA----------LHAETLEFLHP 295
Query: 341 ITNEIIEMIAPLPSILQTHEEAIAQ 365
++ E I AP+P LQ A+ +
Sbjct: 296 VSGEPIRASAPVPEDLQRLMSALRE 320
>RLUD_BUCAP (Q8K9E9) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 315
Score = 96.3 bits (238), Expect = 1e-19
Identities = 88/315 (27%), Positives = 151/315 (47%), Gaps = 47/315 (14%)
Query: 43 SSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEP-DAPHTIEV--LY 99
S + L+ W I + + ++ ++ P+ + G K+ + K P + P I + +Y
Sbjct: 32 SRSCLKKW---IIMNNVYINGKIENQPDKKILGGEKITIYSTDEKLPINLPQNIALNTIY 88
Query: 100 EDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTS 159
ED +I+ +NKP GL V PG Q T+L L + N S+I P +HRL + TS
Sbjct: 89 EDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSI-----PRCGIIHRLDKDTS 143
Query: 160 GILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTIN 219
G+++ AKT + +L + + KI + Y+ ++ G + + + +N
Sbjct: 144 GLMVIAKTIFSYNKLVTLL----------------KKRKIIRKYQGIIKGNMISGGI-VN 186
Query: 220 QPIGMVKYPGVAKGLYVASQS-GKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHL 278
PI +++P K + + + S GK +++ ++ R + T V ++++GR HQIR+H+
Sbjct: 187 YPI--MRHP--FKRICMTTDSLGKKSITHYKIINRF--KFHTHVSFRLETGRTHQIRVHM 240
Query: 279 SFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLS 338
IG+PLLGDPLY GG D+ F E+ R LHA +
Sbjct: 241 LHIGYPLLGDPLY--GG------IDYGCNYFQENRNIYRKFNLF----RQALHADYIEFI 288
Query: 339 HPITNEIIEMIAPLP 353
HP T +++ A LP
Sbjct: 289 HPFTQKVMSWSASLP 303
>RLUD_XANAC (Q8PHN2) Ribosomal large subunit pseudouridine synthase
D (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil
hydrolyase)
Length = 331
Score = 95.5 bits (236), Expect = 2e-19
Identities = 93/317 (29%), Positives = 146/317 (45%), Gaps = 45/317 (14%)
Query: 43 SSAPLQGWLQRIKSDQITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTI--EVLYE 100
S + L W IKS LD + +T+ S V + + AP I VLYE
Sbjct: 39 SRSRLSEW---IKSGDALLDGEMARPRDTLRGGESVQVQVVLETQTHAAPQDIPLSVLYE 95
Query: 101 DDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSG 160
D+ ++ ++KP+GL V PG RT++ L + +++ P VHRL + TSG
Sbjct: 96 DEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALASV-----PRAGVVHRLDKDTSG 150
Query: 161 ILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQ 220
+++ A+T A+ L + R +++ +A + ALVSG T N
Sbjct: 151 VMVVARTVQAQTALVEQLS---------AREVHRQY--LAVVVGALVSG------GTANA 193
Query: 221 PIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQIRIHLSF 280
PI ++P + V G+ A V H R T ++ ++++GR HQIR+H++
Sbjct: 194 PID--RHPRDRLKMAVRDD-GRDA--VTHYRLRERFRAHTALECRLETGRTHQIRVHMAH 248
Query: 281 IGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHRLFLSHP 340
+ P++GDPLY GG K L DE E + R + LHA L HP
Sbjct: 249 LKSPIVGDPLY--GGALK-LPKGATDELVHELRTFKRQA----------LHAETLEFLHP 295
Query: 341 ITNEIIEMIAPLPSILQ 357
++ E + AP+P+ LQ
Sbjct: 296 VSGEPVRASAPVPADLQ 312
>Y209_MYCGE (P47451) Hypothetical pseudouridine synthase MG209 (EC
4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase)
Length = 308
Score = 95.1 bits (235), Expect = 2e-19
Identities = 72/258 (27%), Positives = 117/258 (44%), Gaps = 53/258 (20%)
Query: 95 IEVLYEDDDIIALNKPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRL 154
+EVL+ED D++ +NKPSGL P ++ ++L + NNK+ + VHRL
Sbjct: 80 LEVLFEDKDLMVINKPSGLLTHPTTFNEKASLLAACIFH-NNKNPVYL--------VHRL 130
Query: 155 GRGTSGILLCAKTKLARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINND 214
R TSG ++ K + + L + + T + + Y ALV N
Sbjct: 131 DRDTSGAIVVCKNQASLLNLQNQLQNRT----------------LKRYYVALVHFPFNAL 174
Query: 215 QVTINQPIGMVKYPGVAKGLYVASQSGKPALSVVHVLERNVKENSTLVQVKIQSGRPHQI 274
+IN P+ V V ++ +Q+ K ++ N E + L+ +++ +GR HQI
Sbjct: 175 TGSINAPLARVNNNKV---MFKIAQTAKAKQAITKFKVINQNEKAALISLELLTGRTHQI 231
Query: 275 RIHLSFIGHPLLGDPLYAVGGQPKCLDCDFLDESFAEDGGYTRPSKPVPGDCGYHLHAHR 334
R+HL FI HP+ DPLY + + K +S+ G LHA+R
Sbjct: 232 RVHLKFIQHPVYNDPLYGIKSEKK--------DSY-----------------GQFLHANR 266
Query: 335 LFLSHPITNEIIEMIAPL 352
+ HP N+ ++ APL
Sbjct: 267 ICFIHPTLNKPMDFHAPL 284
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,651,636
Number of Sequences: 164201
Number of extensions: 2140763
Number of successful extensions: 4828
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4434
Number of HSP's gapped (non-prelim): 145
length of query: 371
length of database: 59,974,054
effective HSP length: 112
effective length of query: 259
effective length of database: 41,583,542
effective search space: 10770137378
effective search space used: 10770137378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Medicago: description of AC126015.11