BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126012.8 + phase: 0
(440 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TRA6_STAAU (P19775) Transposase for insertion sequence element I... 36 0.22
TRA6_ENTFA (P59787) Transposase for insertion sequence element I... 36 0.22
TRA5_RHIME (Q52873) Transposase for insertion sequence element I... 35 0.29
TP3A_DROME (Q9NG98) DNA topoisomerase III alpha (EC 5.99.1.2) 35 0.29
FRUA_STRMU (Q03174) Fructan beta-fructosidase precursor (EC 3.2.... 34 0.65
LAMB_SALTI (Q8Z1T9) Maltoporin precursor (Maltose-inducible porin) 34 0.85
LAMB_SALTY (P26466) Maltoporin precursor (Maltose-inducible porin) 32 2.5
TRA6_BURCE (P24575) Transposase for insertion sequence element I... 32 3.2
DVA1_DICVI (Q24702) DVA-1 polyprotein precursor (Antigen-1) (All... 32 3.2
ZSW1_HUMAN (Q9BR11) Zinc finger SWIM domain containing protein 1 30 9.5
PDA1_TOBAC (P93400) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD al... 30 9.5
GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polypro... 30 9.5
>TRA6_STAAU (P19775) Transposase for insertion sequence element
IS256 in transposon Tn4001
Length = 390
Score = 35.8 bits (81), Expect = 0.22
Identities = 33/144 (22%), Positives = 60/144 (40%), Gaps = 13/144 (9%)
Query: 64 LLLAVAQDGNNKTIPIAFALVEGETKEGWSFFLKNLRRHVTKGISVCMVSDRHESIKSAF 123
+ + + +DG+ + I F + GE++E W+ F + L+ +G + ++SD H+ + SA
Sbjct: 186 IAIGITKDGDREII--GFMIQSGESEETWTTFFEYLKERGLQGTEL-VISDAHKGLVSAI 242
Query: 124 NDPRNGWQATGSAHVYCIRHIKQNFMRTIKDGDLKDVVNNMGYALNVPLFNYYRGVIQEA 183
T + C H +N TI + K + N R EA
Sbjct: 243 RK-----SFTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAR----EA 293
Query: 184 NQRAL-DWVDNIPKEKWTQAYDEG 206
R + D++D K + D+G
Sbjct: 294 KNRLIHDYIDQPKYSKACASLDDG 317
>TRA6_ENTFA (P59787) Transposase for insertion sequence element
IS256 in transposon Tn4001
Length = 390
Score = 35.8 bits (81), Expect = 0.22
Identities = 33/144 (22%), Positives = 60/144 (40%), Gaps = 13/144 (9%)
Query: 64 LLLAVAQDGNNKTIPIAFALVEGETKEGWSFFLKNLRRHVTKGISVCMVSDRHESIKSAF 123
+ + + +DG+ + I F + GE++E W+ F + L+ +G + ++SD H+ + SA
Sbjct: 186 IAIGITKDGDREII--GFMIQSGESEETWTTFFEYLKERGLQGTEL-VISDAHKGLVSAI 242
Query: 124 NDPRNGWQATGSAHVYCIRHIKQNFMRTIKDGDLKDVVNNMGYALNVPLFNYYRGVIQEA 183
T + C H +N TI + K + N R EA
Sbjct: 243 RK-----SFTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAR----EA 293
Query: 184 NQRAL-DWVDNIPKEKWTQAYDEG 206
R + D++D K + D+G
Sbjct: 294 KNRLIHDYIDQPKYSKACASLDDG 317
>TRA5_RHIME (Q52873) Transposase for insertion sequence element
ISRM5
Length = 398
Score = 35.4 bits (80), Expect = 0.29
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 22/148 (14%)
Query: 64 LLLAVAQDGNNKTIPIAFALVEGETKEGWSFFLKNLRRHVTKGISVCMVSDRHESIKSAF 123
+L+AV D + + ++ + E++ W FL L+ KG+ + +VSD H + +A
Sbjct: 181 VLIAVGIDWDGRRQILSVEMAGRESRSAWKDFLVRLKGRGLKGVEL-VVSDDHAGLVAAI 239
Query: 124 ND--PRNGWQATGSAHVYCIRHIKQNFMRTIKDGDLKDVVNNMGYALNVPLFNYYRGVIQ 181
+ P WQ +V+ +R+ + R K GD D + + + Y R +
Sbjct: 240 GEVIPEAAWQ---RCYVHFLRNALDHLPR--KHGD--DCLQELRWL-------YDRRDLD 285
Query: 182 EANQRALDWVDNIPKEKWTQAYDEGRRW 209
EA W+ KW+ Y W
Sbjct: 286 EAKADLAAWLG-----KWSVRYPRLTSW 308
>TP3A_DROME (Q9NG98) DNA topoisomerase III alpha (EC 5.99.1.2)
Length = 1250
Score = 35.4 bits (80), Expect = 0.29
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 416 PTPRRCGLCRHTGHIRRNCP 435
P RRCGLCR GH R CP
Sbjct: 1224 PKTRRCGLCRKEGHTRNKCP 1243
>FRUA_STRMU (Q03174) Fructan beta-fructosidase precursor (EC
3.2.1.80) (Exo-beta-D-fructosidase) (Fructanase)
Length = 1423
Score = 34.3 bits (77), Expect = 0.65
Identities = 18/57 (31%), Positives = 32/57 (55%), Gaps = 2/57 (3%)
Query: 34 AFYPCINGFKY--CKPVVHVDGTWLYDKYKGTLLLAVAQDGNNKTIPIAFALVEGET 88
AFYP NG+ + C V + + L+ KG L+ + +GN + + +A++ EG+T
Sbjct: 503 AFYPDSNGYMFSGCVVVDEHNSSGLFKTAKGGLVAIITANGNGQRMELAYSEDEGKT 559
>LAMB_SALTI (Q8Z1T9) Maltoporin precursor (Maltose-inducible porin)
Length = 452
Score = 33.9 bits (76), Expect = 0.85
Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 10/159 (6%)
Query: 62 GTLLLAVAQDGNNKTIPIAFALVEGETKEGWSFFLKNLRRHVTKGISVCMVSDRHESIKS 121
G L L V N T + L +G +K+GW F ++ + + KG + +V +++ +
Sbjct: 210 GVLELGVDYGRANTTD--GYKLADGASKDGWMFTAEHTQS-MLKGYNKFVVQYATDAMTT 266
Query: 122 AFNDPRNGWQATGSAHVYCIRHIKQNFMRTI--KDGDLKDVVNNMGYALNVPLFNYYRGV 179
G + S K N+ + +GD+ ++++ +L Y G+
Sbjct: 267 QGKGQARGSDGSSSFTEELPDGTKINYANKVINNNGDMWRILDHGAISLGDKWDLMYVGM 326
Query: 180 IQEANQRALDWVDNIPKEKWTQAYDEGRRWGHMTSNIVE 218
Q +DW +N+ E WT +W + S ++E
Sbjct: 327 YQN-----IDWDNNLGTEWWTVGVRPMYKWTPIMSTLLE 360
>LAMB_SALTY (P26466) Maltoporin precursor (Maltose-inducible porin)
Length = 452
Score = 32.3 bits (72), Expect = 2.5
Identities = 33/159 (20%), Positives = 66/159 (40%), Gaps = 10/159 (6%)
Query: 62 GTLLLAVAQDGNNKTIPIAFALVEGETKEGWSFFLKNLRRHVTKGISVCMVSDRHESIKS 121
G L L V N T + L +G +K+GW F ++ + + KG + +V +++ +
Sbjct: 210 GVLELGVDYGRANTTD--GYKLADGASKDGWMFTAEHTQS-MLKGYNKFVVQYATDAMTT 266
Query: 122 AFNDPRNGWQATGSAHVYCIRHIKQNFMRTI--KDGDLKDVVNNMGYALNVPLFNYYRGV 179
G + S K N+ + +G++ ++++ +L Y G+
Sbjct: 267 QGKGQARGSDGSSSFTEELSDGTKINYANKVINNNGNMWRILDHGAISLGDKWDLMYVGM 326
Query: 180 IQEANQRALDWVDNIPKEKWTQAYDEGRRWGHMTSNIVE 218
Q +DW +N+ E WT +W + S ++E
Sbjct: 327 YQN-----IDWDNNLGTEWWTVGVRPMYKWTPIMSTLLE 360
>TRA6_BURCE (P24575) Transposase for insertion sequence element
IS406
Length = 388
Score = 32.0 bits (71), Expect = 3.2
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 64 LLLAVAQDGNNKTIPIAFALVEGETKEGWSFFLKNLRRHVTKGISVCMVSDRHESIKSAF 123
+L+AV + + K + + E + W FL++L KG+++ +++D H +K+A
Sbjct: 183 VLIAVGIEASGKRRVLGCEVATSEAEINWRRFLESLLARGLKGVTL-IIADDHAGLKAAR 241
Query: 124 ND--PRNGWQATGSAHVYCIRHIKQNF-MRTIKDGDLKDVVNNMGYALNVP 171
P WQ C H++QN T + K V M N P
Sbjct: 242 RAVLPSVPWQR-------CQFHLQQNAGALTTRQEARKTVAAQMRAIFNAP 285
>DVA1_DICVI (Q24702) DVA-1 polyprotein precursor (Antigen-1)
(Allergen-1) (NPA)
Length = 1557
Score = 32.0 bits (71), Expect = 3.2
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 113 SDRHESIKSAFNDPRNGWQATGSAHVYCIRHIKQNFMRTIKDGDLKDVVNNMGYALNVPL 172
SD E IKS +D IRH+ +N + + D + V +V
Sbjct: 224 SDEVEKIKSLNDDE--------------IRHVVKNAVARLNGEDKEFAVKMETLCEDVLA 269
Query: 173 FNYYRGVIQEANQRALDWVDNIPKEKWTQAYDEGRRWGHMTSNIVESWNSV 223
F + I + R L W+ + K+ Q Y +GR + + I E +S+
Sbjct: 270 FKARKNDIDDKINRRLSWMTDEQKQVVKQLYADGRSQADIRAKIFEFLSSI 320
>ZSW1_HUMAN (Q9BR11) Zinc finger SWIM domain containing protein 1
Length = 456
Score = 30.4 bits (67), Expect = 9.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 320 CDCGKFQALHLPCSHVIAACSSFR 343
C C QA HLPC H++A S+ R
Sbjct: 353 CSCYFNQAFHLPCRHILAMLSARR 376
>PDA1_TOBAC (P93400) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha
1) (Choline phosphatase 1)
(Phosphatidylcholine-hydrolyzing phospholipase D 1)
Length = 808
Score = 30.4 bits (67), Expect = 9.5
Identities = 26/93 (27%), Positives = 40/93 (42%), Gaps = 19/93 (20%)
Query: 76 TIPIAFALVEGETKEGWSFFLKNLRRHVTKGI-------SVCMVSD-------RHESIKS 121
T+ + V+ KEG F ++ HV + I ++ D R IK+
Sbjct: 9 TLHVTIYEVDNLQKEGGGHFFSKIKEHVEETIGFGKGTPAIYATVDLEKARVGRTRKIKN 68
Query: 122 AFNDPRNGWQATGSAHVYCIRHIKQNFMRTIKD 154
N+PR W S H+YC H+ N + T+KD
Sbjct: 69 EPNNPR--WYE--SFHIYC-AHMASNVIFTVKD 96
>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag
polyprotein (Gag polyprotein) (HERV-K(HML-2.HOM) Gag
protein) (HERV-K108 Gag protein) (HERV-K(C7) Gag
protein) [Contains: Matrix protein; Capsid protein;
Nucleocapsid protein]
Length = 665
Score = 30.4 bits (67), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 419 RRCGLCRHTGHIRRNCPSLNNR 440
R+C C GH+++NCP LN +
Sbjct: 543 RKCYNCGQIGHLKKNCPVLNKQ 564
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.138 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,689,220
Number of Sequences: 164201
Number of extensions: 2461420
Number of successful extensions: 4887
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4879
Number of HSP's gapped (non-prelim): 14
length of query: 440
length of database: 59,974,054
effective HSP length: 113
effective length of query: 327
effective length of database: 41,419,341
effective search space: 13544124507
effective search space used: 13544124507
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC126012.8