BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126011.4 + phase: 0 /pseudo
(133 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y622_SULSO (Q9UX16) Hypothetical UPF0130 protein SSO0622 29 1.6
EXON_HHV11 (P04294) Alkaline exonuclease (EC 3.1.11.-) 29 1.6
SPH2_AERPE (Q9YG22) S-adenosylmethionine decarboxylase proenzyme... 29 2.1
KHSE_CLOAB (Q97JN8) Homoserine kinase (EC 2.7.1.39) (HK) 28 2.7
HS78_SCHPO (O59838) Heat shock protein homolog pss1 28 3.5
VCG3_NPVAC (P16091) Zinc finger protein CG30 28 4.6
RA50_YEAST (P12753) DNA repair protein RAD50 (153 kDa protein) 28 4.6
CE29_HUMAN (O15078) Centrosomal protein Cep290 28 4.6
DAAA_STAHA (P54694) D-alanine aminotransferase (EC 2.6.1.21) (D-... 27 6.0
Y43C_MYCPN (P75153) Hypothetical lipoprotein MG439 homolog 3 pre... 27 7.8
SM3A_HUMAN (Q14563) Semaphorin 3A precursor (Semaphorin III) (Se... 27 7.8
>Y622_SULSO (Q9UX16) Hypothetical UPF0130 protein SSO0622
Length = 209
Score = 29.3 bits (64), Expect = 1.6
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 41 DDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEKNTLKKIWASM 100
+D + G +T + + P++ + KN+L I + +E +L KN ++++W +
Sbjct: 40 NDVYTQSSCSGRITIVDAEMPWDRKNSTIIFKNHL--RITEQDLEDVLSKNQVRRLWLIV 97
Query: 101 RG 102
+G
Sbjct: 98 QG 99
>EXON_HHV11 (P04294) Alkaline exonuclease (EC 3.1.11.-)
Length = 626
Score = 29.3 bits (64), Expect = 1.6
Identities = 17/63 (26%), Positives = 32/63 (49%), Gaps = 5/63 (7%)
Query: 40 VDDGVARLGSGGPLTAA---EQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEKNTLKKI 96
++DG LG+ GP A+ Q P +++ +++ + AI R + +TL ++
Sbjct: 542 LEDGAGALGAAGPSKASILPNQAVPIALIITPVRIDPEIYKAIQRS--SRLAFDDTLAEL 599
Query: 97 WAS 99
WAS
Sbjct: 600 WAS 602
>SPH2_AERPE (Q9YG22) S-adenosylmethionine decarboxylase proenzyme 2
(EC 4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains:
S-adenosylmethionine decarboxylase 2 beta chain;
S-adenosylmethionine decarboxylase 2 alpha chain]
Length = 132
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Query: 54 TAAEQKTP---YEMMLKYLKVKNYLLHAIDRKIIETILE 89
T E P +E++L LK + Y +H +DR +T+LE
Sbjct: 89 TCGEHTDPWKAFELLLSELKPRKYTVHYVDRSQEKTVLE 127
>KHSE_CLOAB (Q97JN8) Homoserine kinase (EC 2.7.1.39) (HK)
Length = 296
Score = 28.5 bits (62), Expect = 2.7
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 25 NLDGNFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYL 75
N+D FL++KEY SL G GSG L A ++ + LK+K YL
Sbjct: 230 NIDSIFLKAKEYGSL---GEFISGSGSTLIAVLEEADENFI---LKMKTYL 274
>HS78_SCHPO (O59838) Heat shock protein homolog pss1
Length = 720
Score = 28.1 bits (61), Expect = 3.5
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 53 LTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEKNTLKKIWASMRGK 103
++ E + P E++ KY + ++ ++ A D+ + ET+ KN L++ R K
Sbjct: 544 VSVQEDRLPTEVLEKYREAEHQMI-ATDKLVAETVDRKNALEEYIYDTRAK 593
>VCG3_NPVAC (P16091) Zinc finger protein CG30
Length = 264
Score = 27.7 bits (60), Expect = 4.6
Identities = 14/31 (45%), Positives = 18/31 (57%)
Query: 70 KVKNYLLHAIDRKIIETILEKNTLKKIWASM 100
++KNY L IDR I +LE +T K SM
Sbjct: 16 EIKNYFLQPIDRLTIIPVLELDTCKHQLCSM 46
>RA50_YEAST (P12753) DNA repair protein RAD50 (153 kDa protein)
Length = 1312
Score = 27.7 bits (60), Expect = 4.6
Identities = 17/63 (26%), Positives = 30/63 (46%), Gaps = 9/63 (14%)
Query: 52 PLTAAEQKTPYEM--------MLKYLKVKNYLLHAIDRKIIETILEKNTLKK-IWASMRG 102
PLT Q+ EM M K + + N +H +DR+ + NT++K + + +
Sbjct: 566 PLTQEFQRADLEMDFQKLFINMQKNIAINNKKMHELDRRYTNALYNLNTIEKDLQDNQKS 625
Query: 103 KDK 105
K+K
Sbjct: 626 KEK 628
>CE29_HUMAN (O15078) Centrosomal protein Cep290
Length = 1539
Score = 27.7 bits (60), Expect = 4.6
Identities = 26/94 (27%), Positives = 41/94 (42%), Gaps = 7/94 (7%)
Query: 17 NGKQHK*QNLDGNFLRSKEYWSLVDDG----VARLGSG---GPLTAAEQKTPYEMMLKYL 69
N + K Q LR KE +D + RL SG PLT +Q E+ K
Sbjct: 883 NNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQGKPLTDNKQSLIEELQRKVK 942
Query: 70 KVKNYLLHAIDRKIIETILEKNTLKKIWASMRGK 103
K++N L ++ ++ + EKN +++ GK
Sbjct: 943 KLENQLEGKVEEVDLKPMKEKNAKEELIRWEEGK 976
>DAAA_STAHA (P54694) D-alanine aminotransferase (EC 2.6.1.21)
(D-aspartate aminotransferase) (D-amino acid
aminotransferase) (D-amino acid transaminase) (DAAT)
Length = 282
Score = 27.3 bits (59), Expect = 6.0
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 4/68 (5%)
Query: 25 NLDGNFLRSKEYWSLVDDGVARLGSGGPLTAAEQKTPYEMM---LKYLKVKNYLLHAIDR 81
NL GN L +KEY + G A G +T Y + + V NY+L+ I R
Sbjct: 149 NLLGNVL-AKEYAVKYNAGEAIQHRGETVTEGASSNVYAIKDGAIYTHPVNNYILNGITR 207
Query: 82 KIIETILE 89
K+I+ I E
Sbjct: 208 KVIKWISE 215
>Y43C_MYCPN (P75153) Hypothetical lipoprotein MG439 homolog 3
precursor (E09_orf283b)
Length = 283
Score = 26.9 bits (58), Expect = 7.8
Identities = 14/37 (37%), Positives = 22/37 (58%)
Query: 79 IDRKIIETILEKNTLKKIWASMRGKDKGYKSI*GKGL 115
+D+KI+E L+ + K + + +GKD SI KGL
Sbjct: 84 MDQKILERNLDASRFTKAFGTNKGKDDVIPSISEKGL 120
>SM3A_HUMAN (Q14563) Semaphorin 3A precursor (Semaphorin III) (Sema
III)
Length = 771
Score = 26.9 bits (58), Expect = 7.8
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 40 VDDGVARLGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEKNTLKKI 96
VDD + R G L + +QK NYL HA++ I+T+L K TL+ I
Sbjct: 623 VDDHIIRTDQGLLLRSLQQKDS----------GNYLCHAVEHGFIQTLL-KVTLEVI 668
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.333 0.147 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,496,439
Number of Sequences: 164201
Number of extensions: 540459
Number of successful extensions: 1993
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1990
Number of HSP's gapped (non-prelim): 11
length of query: 133
length of database: 59,974,054
effective HSP length: 109
effective length of query: 24
effective length of database: 42,076,145
effective search space: 1009827480
effective search space used: 1009827480
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 58 (26.9 bits)
Medicago: description of AC126011.4