BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126009.3 - phase: 0 /pseudo
(60 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BCP_PEA (Q41001) Blue copper protein precursor 50 8e-07
CPC_CUCSA (P29602) Cucumber peeling cupredoxin (CPC) (Stellacyanin) 43 2e-04
BCB1_ARATH (Q07488) Blue copper protein precursor (Blue copper-b... 43 2e-04
MAVI_CUCPE (P80728) Mavicyanin 41 5e-04
NO16_MEDTR (P93328) Early nodulin 16 precursor (N-16) 35 0.028
ENL1_ARATH (Q9SK27) Early nodulin-like protein 1 precursor (Phyt... 34 0.063
BABL_LILLO (P60496) Chemocyanin precursor (Basic blue protein) (... 33 0.14
NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20) 33 0.18
STEL_RHUVE (P00302) Stellacyanin 32 0.24
BCB2_ARATH (O80517) Uclacyanin II precursor (Blue copper-binding... 32 0.24
UMEC_ARMRU (P42849) Umecyanin (UMC) 30 0.91
BABL_CUCSA (P00303) Basic blue protein (Cusacyanin) (Plantacyani... 28 4.5
>BCP_PEA (Q41001) Blue copper protein precursor
Length = 189
Score = 50.4 bits (119), Expect = 8e-07
Identities = 21/53 (39%), Positives = 35/53 (65%)
Query: 3 SSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
S+ +VL ++++ ++ ++AT + VGD GW + DY+ WA DK F VGD+L
Sbjct: 4 SNALVLCFLLAIINMALPSLATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSL 56
>CPC_CUCSA (P29602) Cucumber peeling cupredoxin (CPC)
(Stellacyanin)
Length = 137
Score = 42.7 bits (99), Expect = 2e-04
Identities = 20/36 (55%), Positives = 25/36 (68%), Gaps = 3/36 (8%)
Query: 23 ATDHIVGDDKGWTVDFD---YTQWAQDKVFRVGDNL 55
+T HIVGD+ GW+V Y+QWA K FRVGD+L
Sbjct: 2 STVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSL 37
>BCB1_ARATH (Q07488) Blue copper protein precursor (Blue
copper-binding protein) (AtBCB) (Stellacyanin)
(Phytocyanin 1)
Length = 196
Score = 42.7 bits (99), Expect = 2e-04
Identities = 22/45 (48%), Positives = 25/45 (54%), Gaps = 3/45 (6%)
Query: 14 MVLLSSVAIATDHIVGDDKGWTVDFD---YTQWAQDKVFRVGDNL 55
+V + V A D+ VGDD WT D YT WA K FRVGD L
Sbjct: 13 LVFAAVVVFAEDYDVGDDTEWTRPMDPEFYTTWATGKTFRVGDEL 57
>MAVI_CUCPE (P80728) Mavicyanin
Length = 108
Score = 41.2 bits (95), Expect = 5e-04
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 23 ATDHIVGDDKGWT--VDFDYTQWAQDKVFRVGDNL 55
AT H VGD GWT V +DY +WA F VGD+L
Sbjct: 1 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSL 35
>NO16_MEDTR (P93328) Early nodulin 16 precursor (N-16)
Length = 180
Score = 35.4 bits (80), Expect = 0.028
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 2 ASSRVVLILSISMVLLSSVAIATDHIVGDD-KGWTVDFD----YTQWAQDKVFRVGDNL 55
+SS ++L++ SM LL S + +TD+++GD W V + +WA F VGD +
Sbjct: 3 SSSPILLMIIFSMWLLISHSESTDYLIGDSHNSWKVPLPSRRAFARWASAHEFTVGDTI 61
>ENL1_ARATH (Q9SK27) Early nodulin-like protein 1 precursor
(Phytocyanin-like protein)
Length = 176
Score = 34.3 bits (77), Expect = 0.063
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKG-WTV----DFDYTQWAQDKVFRVGD 53
MASS + + + S++ L S+A A + VG G W + + +T+WAQ F+VGD
Sbjct: 1 MASSSLHVAI-FSLIFLFSLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGD 57
>BABL_LILLO (P60496) Chemocyanin precursor (Basic blue protein)
(Plantacyanin)
Length = 126
Score = 33.1 bits (74), Expect = 0.14
Identities = 21/56 (37%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Query: 3 SSRVVLILSISMVLL---SSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
S+ L+L + +V L VA + + VGD GWT F + W K FR GD L
Sbjct: 7 SAERALVLGVVLVFLVFNCEVAESVVYTVGDGGGWT--FGTSGWPAGKTFRAGDVL 60
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)
Length = 268
Score = 32.7 bits (73), Expect = 0.18
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 2 ASSRVVLILSISMVLLSSVAIATDHIVGD-DKGWTVDFD----YTQWAQDKVFRVGDNL 55
+SS ++L+ S+ +L S + +TD++VGD + W T+WA + F VGD +
Sbjct: 3 SSSPILLMFIFSIWMLISYSESTDYLVGDSENSWKFPLPTRHALTRWASNYQFIVGDTI 61
>STEL_RHUVE (P00302) Stellacyanin
Length = 107
Score = 32.3 bits (72), Expect = 0.24
Identities = 17/37 (45%), Positives = 21/37 (55%), Gaps = 5/37 (13%)
Query: 24 TDHIVGDDKGWTVDF----DYT-QWAQDKVFRVGDNL 55
T + VGD GW V F DY +WA +K F +GD L
Sbjct: 1 TVYTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVL 37
>BCB2_ARATH (O80517) Uclacyanin II precursor (Blue copper-binding
protein II) (BCB II) (Phytocyanin 2)
Length = 202
Score = 32.3 bits (72), Expect = 0.24
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 34 WTVDFDYTQWAQDKVFRVGDNL 55
WT DY+ WA K FRVGD L
Sbjct: 36 WTTGVDYSGWATGKTFRVGDIL 57
>UMEC_ARMRU (P42849) Umecyanin (UMC)
Length = 115
Score = 30.4 bits (67), Expect = 0.91
Identities = 16/34 (47%), Positives = 17/34 (49%), Gaps = 3/34 (8%)
Query: 25 DHIVGDDKGWTVDFD---YTQWAQDKVFRVGDNL 55
D+ VG D W D Y WA K FRVGD L
Sbjct: 2 DYDVGGDMEWKRPSDPKFYITWATGKTFRVGDEL 35
>BABL_CUCSA (P00303) Basic blue protein (Cusacyanin)
(Plantacyanin) (CBP)
Length = 96
Score = 28.1 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 26 HIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
++VG GWT F+ W + K FR GD L
Sbjct: 3 YVVGGSGGWT--FNTESWPKGKRFRAGDIL 30
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,070,891
Number of Sequences: 164201
Number of extensions: 160100
Number of successful extensions: 543
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 13
length of query: 60
length of database: 59,974,054
effective HSP length: 36
effective length of query: 24
effective length of database: 54,062,818
effective search space: 1297507632
effective search space used: 1297507632
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Medicago: description of AC126009.3