BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126006.3 + phase: 0
(692 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MTR1_MOUSE (Q9Z2C4) Myotubularin-related protein 1 (EC 3.1.3.-) 35 0.87
ATX1_PLAFA (Q04956) Probable cation-transporting ATPase 1 (EC 3.... 34 1.1
RPC2_CYACA (Q9TM34) DNA-directed RNA polymerase beta'' chain (EC... 33 1.9
DPOL_PYRSD (Q51334) DNA polymerase (EC 2.7.7.7) (Deep vent DNA p... 32 4.3
Y372_AQUAE (O66695) Hypothetical protein AQ_372 32 7.3
TOP1_MYCPN (P78032) DNA topoisomerase I (EC 5.99.1.2) (Omega-pro... 31 9.6
ATHL_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2 ... 31 9.6
>MTR1_MOUSE (Q9Z2C4) Myotubularin-related protein 1 (EC 3.1.3.-)
Length = 669
Score = 34.7 bits (78), Expect = 0.87
Identities = 25/97 (25%), Positives = 39/97 (39%), Gaps = 10/97 (10%)
Query: 209 MHFKRQSENPSFYYDFQMDVEEKITNVFWADAQMINDYGCSGDVITFDTTYMT----NKD 264
M+FK +P F D + V ++ + AQ D C +++ D + ++
Sbjct: 138 MYFKNVERDPHFVLDVPLGVISRVEKI---GAQSHGDNSCGIEIVCKDMRNLRLAYKQEE 194
Query: 265 YRPLGVFVGLNNHKQMVVFGATLL---YDETIPSFQW 298
R LG+F LN H + G L Y E P W
Sbjct: 195 QRKLGIFENLNKHAFPLSNGQVLFAFNYKEKFPVNGW 231
>ATX1_PLAFA (Q04956) Probable cation-transporting ATPase 1 (EC
3.6.3.-)
Length = 1956
Score = 34.3 bits (77), Expect = 1.1
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 17/172 (9%)
Query: 414 KHFTAGMRSTQLSESFNAELKNYLKSDLNLVQFFSHFGRIVHGIRNNESEADYES-RHKL 472
K F+ +R +L E N KN + +N V S G I+ + + + DY S ++K
Sbjct: 1579 KFFSNIIRRHKLKEKKNK--KNIKRYKMNHVNNTSK-GHIILNMCTHGFKKDYSSLKNKY 1635
Query: 473 PKLKMKRAPMLVQAGNIYTPKTFEEFQEEYEEYLGTCVKNLKEGLYVVTNYDNNKERMVI 532
+ KR +++ N+Y + + Y C K + +Y+ N +NN + I
Sbjct: 1636 RIVNNKR--YMLKNDNVYDRHMYN-LTDMYRGTQYGCSKKKNKNIYM--NNNNNILKNKI 1690
Query: 533 GNLMDQKVACDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDARL 584
++ + C++ H K D+ NIKL YIL+ T AR+
Sbjct: 1691 NRFLEHLLVDKCKRNICH--------KYTDIKNIKLSIYEYILRTCTVYARM 1734
>RPC2_CYACA (Q9TM34) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1269
Score = 33.5 bits (75), Expect = 1.9
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 624 SHETYTFLSKVFEESDKIIDDMLAKKFVGVESLEMSHVSI----PVAMEKIDNNVHTLD 678
S+ TF +K+F +KIID+++ K V VE +++ + S PV K+ N D
Sbjct: 696 SNNLSTFTNKIFYPGEKIIDNIVTNKIVYVEHIKLINKSCILIRPVNQYKVSNTESLFD 754
>DPOL_PYRSD (Q51334) DNA polymerase (EC 2.7.7.7) (Deep vent DNA
polymerase) [Contains: Endonuclease PI-PspI (EC 3.1.-.-)
(Psp-GDB pol intein)]
Length = 1312
Score = 32.3 bits (72), Expect = 4.3
Identities = 16/45 (35%), Positives = 28/45 (61%), Gaps = 2/45 (4%)
Query: 628 YTFLSKVFEESDKIIDDM--LAKKFVGVESLEMSHVSIPVAMEKI 670
+++ +++ E+D+++DDM LAKKF G ++V IP M I
Sbjct: 793 WSYTVRLYNENDEVLDDMEHLAKKFFGKVKRGKNYVEIPKKMAYI 837
>Y372_AQUAE (O66695) Hypothetical protein AQ_372
Length = 531
Score = 31.6 bits (70), Expect = 7.3
Identities = 34/118 (28%), Positives = 52/118 (43%), Gaps = 20/118 (16%)
Query: 351 VNHLYQKSSKFCSDFEACIDLHEEEGEFLNSWNVL---LVEH-----NVSEDSWLRMIFQ 402
+N +++K D+E+ ID+ E +G F N NV+ L+E + ED + F
Sbjct: 129 LNDIHRKEDM---DYESIIDVLENKGYFENIRNVIKYYLIETLKLIISNQEDKNAPLCFF 185
Query: 403 LKEKWAWVYVRKHFTAGMRS-TQLSES--------FNAELKNYLKSDLNLVQFFSHFG 451
+E+ +VY K+ G T LS S +N K YL FF+ FG
Sbjct: 186 CRERHTYVYKGKYRVFGAEHFTPLSASEDTLPNLFWNGRNKMYLCPYCEFYLFFAAFG 243
>TOP1_MYCPN (P78032) DNA topoisomerase I (EC 5.99.1.2)
(Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
(Swivelase)
Length = 711
Score = 31.2 bits (69), Expect = 9.6
Identities = 34/156 (21%), Positives = 65/156 (40%), Gaps = 20/156 (12%)
Query: 433 LKNYLKSDLNLVQFFSHFGRIVHGIRNNESEADYESRHKLPKLKMKRAPMLVQAGNIYTP 492
L+ YL +D +V H +VH +EADY + K+ L GN+
Sbjct: 17 LQKYLPNDFEIVSTIGHIREMVHK-NFGFNEADYSPVWEDWTKSKKKFSSLSFKGNLKGK 75
Query: 493 KTFEEFQEEYEEYLGTCVKNLKE------GLYVVTNYDNNKERMV--IGNLMDQKVACDC 544
K ++ +K++KE +Y+ T+ D E + + +++D+K C
Sbjct: 76 KLLSKYD---------IIKSIKEKASKATNIYLATDPDREGEAISWHVYDVLDEKDKSKC 126
Query: 545 RKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTR 580
++ + I + L L N + I Q ++ ++ R
Sbjct: 127 QRITFNEITKNAVLDAL--KNPREIDQSWVQSQFAR 160
>ATHL_RABIT (Q9TV52) Potassium-transporting ATPase alpha chain 2 (EC
3.6.3.10) (Proton pump) (Non-gastric H(+)/K(+) ATPase
alpha subunit) (HK alpha 2)
Length = 1094
Score = 31.2 bits (69), Expect = 9.6
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 63 IRREYGNKSKKDGILTSRRFTCFKEGKRGVDKRDHLTKEGRVETRTGCDARMVISLDRKI 122
I+++ G KKD L +R +E K+ +D DH +ET+ G D + R +
Sbjct: 80 IKKKEGRDGKKDNDLELKRNQQKEELKKELDLDDHKLSNKELETKYGTD------IIRGL 133
Query: 123 GKYKVVDFVAQHN-HLLEPP 141
+ + +AQ+ + L PP
Sbjct: 134 SSTRAAELLAQNGPNALTPP 153
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,474,123
Number of Sequences: 164201
Number of extensions: 3527521
Number of successful extensions: 8210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8209
Number of HSP's gapped (non-prelim): 7
length of query: 692
length of database: 59,974,054
effective HSP length: 117
effective length of query: 575
effective length of database: 40,762,537
effective search space: 23438458775
effective search space used: 23438458775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)
Medicago: description of AC126006.3