BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125481.2 + phase: 0 /pseudo
(1546 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 118 1e-25
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 107 2e-22
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 102 8e-21
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 100 4e-20
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 99 1e-19
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 96 8e-19
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 94 2e-18
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 93 6e-18
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 92 1e-17
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 89 7e-17
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 89 7e-17
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 86 8e-16
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 86 1e-15
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 86 1e-15
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 84 3e-15
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 83 5e-15
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 79 1e-13
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 73 5e-12
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 72 2e-11
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 70 4e-11
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 118 bits (296), Expect = 1e-25
Identities = 68/236 (28%), Positives = 123/236 (51%), Gaps = 3/236 (1%)
Query: 553 ERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRK 612
E +++ + ++++ D+FA S ++ G + C + + +P+ QK R + +
Sbjct: 899 ENGDDRKIWDVIEQFQDVFAISDDEL-GRNSGTECV-IELKEGAEPIRQKPRPIPLALKP 956
Query: 613 AVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNI 672
+ + ++K+ + I E K P W + VLVKK G RMC+DY +N + +PLPNI
Sbjct: 957 EIRKMIQKMLNQKVIRESKSP-WSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNI 1015
Query: 673 DHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATF 732
+ + + AG K + D + + Q+ +D F + + + V+ FGL + A F
Sbjct: 1016 EATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALF 1075
Query: 733 QRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKC 788
Q +M+ I +G VYVDDL++ + QH +D+KE ++RK+ M+L +KC
Sbjct: 1076 QGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKC 1131
Score = 41.2 bits (95), Expect = 0.022
Identities = 40/191 (20%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 1129 EVIYVPREQNVRADLLAK--LASTKRPGNNRTVIQEVVSAPNCEAKEVLSTT-------Q 1179
+++Y+ + N AD L++ + + +V+A E ++L ++
Sbjct: 1346 KIVYLAGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSSCWLERLKG 1405
Query: 1180 ETEGWMAPILKYLTGSFDPVSEEEKQLVRKRAAKFTIVAGKLYKRGTVTPLLRCLGEEET 1239
E EGW ++ L G + + + + + ++ + G + K + R + E+
Sbjct: 1406 EDEGWKE-VIAALEGGKTKGTFKIVGIESEISLEYYKIVGGVLKNTEIEEQSRSVVPEKI 1464
Query: 1240 KLVLL-EVHEGVCGSHISGRSLVAKLLRAGYYWPRMTQDCCEFVKKCDKCQRFSDKKTAP 1298
+ LL E+HEG+ H G + +++ +YWP+M V+ C KC +D
Sbjct: 1465 RTPLLKELHEGMLAGHF-GIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCANDH---- 1519
Query: 1299 ANELTSVFSPW 1309
++LTS +P+
Sbjct: 1520 -SKLTSSLTPY 1529
Score = 34.3 bits (77), Expect = 2.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 1483 VQVLWSYHTTPHSTTGETPFTMVYGADAMLPVEI 1516
V +++Y+ H TGETP +++G D M P+E+
Sbjct: 1662 VYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEM 1695
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 107 bits (268), Expect = 2e-22
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 4/204 (1%)
Query: 598 PVVQKKRKMGEEKRKAVDEEVRKLKEARFISE----IKYPTWLANTVLVKKSSGKWRMCV 653
P+ K+ + + V+ +V+++ I E PTW+ + K+R+ +
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265
Query: 654 DYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQ 713
DY LN D YP+PN+D ++ + + +D ++Q++MD K F T
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325
Query: 714 KNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIF 773
+Y Y M FGLRNA ATFQR M+ I + ++ VY+DD+++ +++ +H ++ +F
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385
Query: 774 QQVRKANMRLNPAKCTFGVHAENF 797
++ AN++L KC F NF
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANF 409
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 102 bits (254), Expect = 8e-21
Identities = 61/207 (29%), Positives = 106/207 (50%), Gaps = 7/207 (3%)
Query: 597 KPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSG------KWR 650
+PV K + + + + +V+KL + + + E + + +LV K S KWR
Sbjct: 313 EPVYTKNYRSPHSQVEEIQAQVQKLIKDKIV-EPSVSQYNSPLLLVPKKSSPNSDKKKWR 371
Query: 651 MCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFM 710
+ +DY +N D +PLP ID ++D K S +D S ++Q+++D F
Sbjct: 372 LVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFS 431
Query: 711 TNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLK 770
T+ +Y + + FGL+ A +FQR M FS +Y+DDL+V +E ++L
Sbjct: 432 TSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLT 491
Query: 771 EIFQQVRKANMRLNPAKCTFGVHAENF 797
E+F + R+ N++L+P KC+F +H F
Sbjct: 492 EVFGKCREYNLKLHPEKCSFFMHEVTF 518
Score = 50.4 bits (119), Expect = 4e-05
Identities = 32/115 (27%), Positives = 53/115 (45%), Gaps = 5/115 (4%)
Query: 1213 KFTIVAGKLYKR---GTVTPLLRCLGEEETKLVLLEVHEG-VCGSHISGRSLVAKLLRAG 1268
KF + K+ K + P+ + E+E + +L +H+ + G H +AK+ R
Sbjct: 864 KFKNMGNKILKNLKVALLNPVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRH- 922
Query: 1269 YYWPRMTQDCCEFVKKCDKCQRFSDKKTAPANELTSVFSPWPFHKSGVDIVGPFP 1323
YYW M++ E+V+KC KCQ+ K + F + VD +GP P
Sbjct: 923 YYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPLP 977
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 100 bits (248), Expect = 4e-20
Identities = 50/158 (31%), Positives = 85/158 (53%)
Query: 633 PTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYS 692
P W+ K+R+ +DY LN D +P+PN+D ++ + +D
Sbjct: 246 PIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAK 305
Query: 693 DYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYV 752
++Q++MD K F T +Y Y M FGL+NA ATFQR M+ I + ++ VY+
Sbjct: 306 GFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYL 365
Query: 753 DDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTF 790
DD++V +++ +H + L +F+++ KAN++L KC F
Sbjct: 366 DDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEF 403
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 98.6 bits (244), Expect = 1e-19
Identities = 64/208 (30%), Positives = 109/208 (51%), Gaps = 10/208 (4%)
Query: 598 PVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKS-SGKWRMCVDY- 655
PV ++ R + +AV+ E+ +L+E I I Y W A V++KK +GK R+C D+
Sbjct: 440 PVFKRARPVPYGSLEAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFK 499
Query: 656 -TDLNMACPKDPYPLPNIDHLIDNAAG--YKTLSFMDAYSDYNQMKMDLLDAPKIVFMTN 712
+ LN A + +PLP + + G Y + DAY Q+++D V T+
Sbjct: 500 CSGLNAALKDEFHPLPTSEDIFSRLKGTVYSQIDLKDAYL---QVELDEEAQKLAVINTH 556
Query: 713 QKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEI 772
+ + Y M+FGL+ A A+FQ+ MD + S G + VY DD+++ S+ +H + L+E+
Sbjct: 557 RGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTG--VAVYWDDIIISASSIEEHEKILREL 614
Query: 773 FQQVRKANMRLNPAKCTFGVHAENFWVF 800
F++ ++ R++ KC F F F
Sbjct: 615 FERFKEYGFRVSAEKCAFAQKQVTFLGF 642
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 95.9 bits (237), Expect = 8e-19
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 4/217 (1%)
Query: 578 MPGIDIKVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFI----SEIKYP 633
+ G+ ++ A + P+ K R V+ ++ +L + I S P
Sbjct: 103 LSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSP 162
Query: 634 TWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSD 693
W+ ++RM VD+ LN D YP+P+I+ + + K + +D S
Sbjct: 163 IWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSG 222
Query: 694 YNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVD 753
++Q+ M D PK F T Y + + FGL+NA A FQR +D I IG+ VY+D
Sbjct: 223 FHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYID 282
Query: 754 DLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTF 790
D++V + H ++L+ + + KAN+++N K F
Sbjct: 283 DIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHF 319
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 94.4 bits (233), Expect = 2e-18
Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 11/224 (4%)
Query: 584 KVACHHLAINPSVKPVVQKKRKMGEEKRKAVDEEVRKLKEARFI--SEIKYPTWL----- 636
K+ C INP +K + + + + +A+ ++ L + + I SE K+ +
Sbjct: 1388 KIKCKLNIINPDIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRS 1447
Query: 637 ---ANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSD 693
+ + K+ GK RM +Y LN D Y LP I+ +I K S D S
Sbjct: 1448 GTEIDPITGKEKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSG 1507
Query: 694 YNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVD 753
+ Q+ M+ P F+ K Y + VM FGL+NA A FQR MD +F + + VY+D
Sbjct: 1508 FWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYID 1566
Query: 754 DLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCTFGVHAENF 797
D++V + QHS+ L + Q ++ + L+P K G +F
Sbjct: 1567 DILVFSETAEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDF 1610
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 92.8 bits (229), Expect = 6e-18
Identities = 53/181 (29%), Positives = 96/181 (52%), Gaps = 1/181 (0%)
Query: 610 KRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPL 669
K +A+++E+ + ++ I E K + V K G RM VDY LN + YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 670 PNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAG 729
P I+ L+ G + +D S Y+ +++ D K+ F + + Y VM +G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAP 542
Query: 730 ATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCT 789
A FQ ++TI ++ Y+DD+++ + +E +H + +K++ Q+++ AN+ +N AKC
Sbjct: 543 AHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 790 F 790
F
Sbjct: 603 F 603
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 91.7 bits (226), Expect = 1e-17
Identities = 57/186 (30%), Positives = 94/186 (49%), Gaps = 13/186 (6%)
Query: 614 VDEEVRKLKEARFI----SEIKYPTWLANTVLVKKSSGKW-----RMCVDYTDLNMACPK 664
V+ EV++L + I S PTW+ + KK + + R+ +D+ LN
Sbjct: 197 VNNEVKQLLKDGIIRPSRSPYNSPTWVVD----KKGTDAFGNPNKRLVIDFRKLNEKTIP 252
Query: 665 DPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFG 724
D YP+P+I ++ N K + +D S Y+Q+ + D K F N Y + + FG
Sbjct: 253 DRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFG 312
Query: 725 LRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLN 784
LRNA + FQR++D + QIG+ VYVDD+++ + E H + + + + ANMR++
Sbjct: 313 LRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVS 372
Query: 785 PAKCTF 790
K F
Sbjct: 373 QEKTRF 378
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 89.4 bits (220), Expect = 7e-17
Identities = 52/181 (28%), Positives = 96/181 (52%), Gaps = 1/181 (0%)
Query: 610 KRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPL 669
K +A+++E+ + ++ I E K + V K G RM VDY LN + YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 670 PNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAG 729
P I+ L+ G + +D S Y+ +++ D K+ F + + Y VM +G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542
Query: 730 ATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCT 789
A FQ ++TI ++ Y+D++++ + +E +H + +K++ Q+++ AN+ +N AKC
Sbjct: 543 AHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 790 F 790
F
Sbjct: 603 F 603
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 89.4 bits (220), Expect = 7e-17
Identities = 52/181 (28%), Positives = 96/181 (52%), Gaps = 1/181 (0%)
Query: 610 KRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSSGKWRMCVDYTDLNMACPKDPYPL 669
K +A+++E+ + ++ I E K + V K G RM VDY LN + YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 670 PNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKNYHYEVMSFGLRNAG 729
P I+ L+ G + +D S Y+ +++ D K+ F + + Y VM +G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542
Query: 730 ATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQVRKANMRLNPAKCT 789
A FQ ++TI ++ Y+D++++ + +E +H + +K++ Q+++ AN+ +N AKC
Sbjct: 543 AHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 790 F 790
F
Sbjct: 603 F 603
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 85.9 bits (211), Expect = 8e-16
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 6/205 (2%)
Query: 597 KPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLV----KKSSGKWRMC 652
K + K K R+ D+++++L + + I K P +A LV +K GK RM
Sbjct: 245 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPH-MAPAFLVNNEAEKRRGKKRMV 303
Query: 653 VDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTN 712
V+Y +N A D Y LPN D L+ G K S D S + Q+ +D P F
Sbjct: 304 VNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 363
Query: 713 QKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEI 772
Q +Y + V+ FGL+ A + FQR MD F + VYVDD++V ++ E H + I
Sbjct: 364 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRV-FRKFCCVYVDDILVFSNNEEDHLLHVAMI 422
Query: 773 FQQVRKANMRLNPAKCTFGVHAENF 797
Q+ + + L+ K NF
Sbjct: 423 LQKCNQHGIILSKKKAQLFKKKINF 447
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 85.5 bits (210), Expect = 1e-15
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 6/205 (2%)
Query: 597 KPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLV----KKSSGKWRMC 652
K + K K R+ D+++++L + + I K P +A LV +K GK RM
Sbjct: 245 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPH-MAPAFLVNNEAEKRRGKKRMV 303
Query: 653 VDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTN 712
V+Y +N A D Y LPN D L+ G K S D S + Q+ +D P F
Sbjct: 304 VNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 363
Query: 713 QKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEI 772
Q +Y + V+ FGL+ A + FQR MD F + VYVDD++V ++ E H + I
Sbjct: 364 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRV-FRKFCCVYVDDILVFSNNEEDHLLHVAMI 422
Query: 773 FQQVRKANMRLNPAKCTFGVHAENF 797
Q+ + + L+ K NF
Sbjct: 423 LQKCNQHGIILSKKKAQLFKKKINF 447
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 85.5 bits (210), Expect = 1e-15
Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 6/205 (2%)
Query: 597 KPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLV----KKSSGKWRMC 652
K + K K R+ D+++++L + + I K P +A LV +K GK RM
Sbjct: 245 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPH-MAPAFLVNNEAEKRRGKKRMV 303
Query: 653 VDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTN 712
V+Y +N A D Y LPN D L+ G K S D S + Q+ +D P F
Sbjct: 304 VNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 363
Query: 713 QKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEI 772
Q +Y + V+ FGL+ A + FQR MD F + VYVDD++V ++ E H + I
Sbjct: 364 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRV-FRKFCCVYVDDILVFSNNEEDHLLHVAMI 422
Query: 773 FQQVRKANMRLNPAKCTFGVHAENF 797
Q+ + + L+ K NF
Sbjct: 423 LQKCNQHGIILSKKKAQLFKKKINF 447
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 84.0 bits (206), Expect = 3e-15
Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 6/205 (2%)
Query: 597 KPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSS----GKWRMC 652
K + K K R+ D+++++L + + I K P +A LV + G RM
Sbjct: 246 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPH-MAPAFLVNNEAENGRGNKRMV 304
Query: 653 VDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTN 712
V+Y +N A D Y LPN D L+ G K S D S + Q+ +D P F
Sbjct: 305 VNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 364
Query: 713 QKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEI 772
Q +Y + V+ FGL+ A + FQR MD F + VYVDD+VV ++ E H + I
Sbjct: 365 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRV-FRKFCCVYVDDIVVFSNNEEDHLLHVAMI 423
Query: 773 FQQVRKANMRLNPAKCTFGVHAENF 797
Q+ + + L+ K NF
Sbjct: 424 LQKCNQHGIILSKKKAQLFKKKINF 448
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 83.2 bits (204), Expect = 5e-15
Identities = 63/205 (30%), Positives = 95/205 (45%), Gaps = 6/205 (2%)
Query: 597 KPVVQKKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLV----KKSSGKWRMC 652
K + K K R+ D+++++L + + I K P +A LV +K GK RM
Sbjct: 240 KAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPH-MAPAFLVNNEAEKRRGKKRMV 298
Query: 653 VDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTN 712
V+Y +N A D Y PN D L+ G K S D S + Q+ +D P F
Sbjct: 299 VNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 358
Query: 713 QKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEI 772
Q +Y + V+ FGL+ A + FQR MD F + VYVDD++V ++ E H + I
Sbjct: 359 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRV-FRKFCCVYVDDILVFSNNEEDHLLHVAMI 417
Query: 773 FQQVRKANMRLNPAKCTFGVHAENF 797
Q+ + + L+ K NF
Sbjct: 418 LQKCNQHGIILSKKKAQLFKKKINF 442
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 78.6 bits (192), Expect = 1e-13
Identities = 43/123 (34%), Positives = 63/123 (50%)
Query: 650 RMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVF 709
RMC+DY L K+ YP+P +D L D A + +D S Y Q+++ D PK
Sbjct: 7 RMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTC 66
Query: 710 MTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDL 769
+T ++ + VM FGL NA ATF M+ + + + VY+DDLVV T E +
Sbjct: 67 VTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHI 126
Query: 770 KEI 772
K +
Sbjct: 127 KHL 129
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 73.2 bits (178), Expect = 5e-12
Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 11/147 (7%)
Query: 647 GKWRMCVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPK 706
GK RM ++Y +N A D Y LP D +++ G S +DA S Y Q+++ P
Sbjct: 255 GKRRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPL 314
Query: 707 IVF-MTNQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLE----VYVDDLVVKT-S 760
F QK+Y + V+SFGL+ A + +QR MD Q + LE Y+DD+++ T
Sbjct: 315 TAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMD-----QSLKGLEHICLAYIDDILIFTKG 369
Query: 761 AEGQHSEDLKEIFQQVRKANMRLNPAK 787
++ QH D++ + Q++++ + ++ K
Sbjct: 370 SKEQHVNDVRIVLQRIKEKGIIISKKK 396
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 666
Score = 71.6 bits (174), Expect = 2e-11
Identities = 83/382 (21%), Positives = 155/382 (39%), Gaps = 55/382 (14%)
Query: 434 KSIKIRYL--------VFNAPSSYNAIIGRPSINLLDAFVSTKHLMMKYPLDNGRVGI-- 483
K++K+++ V+ + + +IG L + F+ + + + L N V I
Sbjct: 96 KNLKVKFAGKSFEIPTVYQQETGIDFLIGNNFCRLYNPFIQWED-RIAFHLKNEMVLIKK 154
Query: 484 VRGD*KIAREYYHASLKLNVKSSEILGVNLID--LDPREDYQ--QERIEPVEDLKDIMIG 539
V ++ + ++K + K+ +I G N+ ++P E Y E+ + +E L D +
Sbjct: 155 VTKAFSVSNPSFLENMKKDSKTEQIPGTNISKNIINPEERYFLITEKYQKIEQLLDKVCS 214
Query: 540 TGPNQTIKIGTSLERAEEKNLIQLLQENADLFAWSPSDMPGIDIKVACHHLAINPSVKPV 599
P IK W + + ID +K +
Sbjct: 215 ENPIDPIKSKQ----------------------WMKASIKLID------------PLKVI 240
Query: 600 VQKKRKMGEEKRKAVDEEVRKLKEARFI----SEIKYPTWLANTVLVKKSSGKWRMCVDY 655
K + R+ +++++L + I S+ P +L ++ GK RM V+Y
Sbjct: 241 RVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVENE-AERRRGKKRMVVNY 299
Query: 656 TDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMTNQKN 715
+N A D + LPN+ L+ G S D S + Q+ +D F Q +
Sbjct: 300 KAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGH 359
Query: 716 YHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDDLVVKTSAEGQHSEDLKEIFQQ 775
+ ++V+ FGL+ A + FQR M T + + VYVDD++V +++E H + + +
Sbjct: 360 FQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFSNSELDHYNHVYAVLKI 418
Query: 776 VRKANMRLNPAKCTFGVHAENF 797
V K + L+ K NF
Sbjct: 419 VEKYGIILSKKKANLFKEKINF 440
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 659
Score = 70.1 bits (170), Expect = 4e-11
Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 7/207 (3%)
Query: 597 KPVVQ-KKRKMGEEKRKAVDEEVRKLKEARFISEIKYPTWLANTVLVKKSS----GKWRM 651
K VV+ K R+ D ++++L E + I K T ++ LV+ + GK RM
Sbjct: 226 KTVVKVKPMSYSPSDREEFDRQIKELLELKVIKPSK-STHMSPAFLVENEAERRRGKKRM 284
Query: 652 CVDYTDLNMACPKDPYPLPNIDHLIDNAAGYKTLSFMDAYSDYNQMKMDLLDAPKIVFMT 711
V+Y +N A D + LPN D L+ G K S D S Q+ +D F
Sbjct: 285 VVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTC 344
Query: 712 NQKNYHYEVMSFGLRNAGATFQRSMDTIFSAQIGRNLEVYVDD-LVVKTSAEGQHSEDLK 770
Q +Y + V+ FGL+ A + F ++ S Q + VYVDD LV + +H +
Sbjct: 345 PQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVL 404
Query: 771 EIFQQVRKANMRLNPAKCTFGVHAENF 797
I ++ K + L+ K NF
Sbjct: 405 NILRRCEKLGIILSKKKAQLFKEKINF 431
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.339 0.147 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,210,519
Number of Sequences: 164201
Number of extensions: 6494308
Number of successful extensions: 20879
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 20715
Number of HSP's gapped (non-prelim): 179
length of query: 1546
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1423
effective length of database: 39,777,331
effective search space: 56603142013
effective search space used: 56603142013
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 73 (32.7 bits)
Medicago: description of AC125481.2