BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125480.15 - phase: 0
(362 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YCT5_YEAST (P25381) Putative subtilase-type proteinase YCR045C p... 31 4.3
OTCC_PSEAE (P08308) Ornithine carbamoyltransferase, catabolic (E... 31 5.6
EDA_MOUSE (O54693) Ectodysplasin A (EDA protein homolog) (Tabby ... 31 5.6
EDA_HUMAN (Q92838) Ectodysplasin A (Ectodermal dysplasia protein... 31 5.6
EDA_BOVIN (Q9BEG5) Ectodysplasin A (Ectodysplasin 1) (Ectodermal... 31 5.6
DHX9_CAEEL (Q22307) Probable ATP-dependent RNA helicase A (Nucle... 31 5.6
PPIC_MOUSE (P30412) Peptidyl-prolyl cis-trans isomerase C (EC 5.... 30 7.3
PPIC_HUMAN (P45877) Peptidyl-prolyl cis-trans isomerase C (EC 5.... 30 7.3
POLN_CACV4 (Q8V736) Non-structural polyprotein [Contains: Unknow... 30 9.5
>YCT5_YEAST (P25381) Putative subtilase-type proteinase YCR045C
precursor (EC 3.4.21.-)
Length = 491
Score = 31.2 bits (69), Expect = 4.3
Identities = 34/145 (23%), Positives = 61/145 (41%), Gaps = 20/145 (13%)
Query: 219 KSDNPTSKECC-------YIWELLAMALNDMVLEGIIKEEKLNTFNIPIYYPSPSEVKLE 271
K P K+C + ++ MA+ + EGI+ FN+ Y+ SP+ +
Sbjct: 256 KVSRPQGKKCVANLSLGSFRSPIINMAVEGAIEEGIVFVAAAGNFNLDAYWASPASAE-N 314
Query: 272 VITEGSFVMNQLEISEV-NWNA-----RDDFESESFGDDGYNVAQCM--RALAEPLLVS- 322
VIT G+F + I++ NW E ES YN + +++ P++
Sbjct: 315 VITVGAFDDHIDTIAKFSNWGPCVNIFAPGVEIESLSHLNYNDTLILSGTSMSTPIVTGV 374
Query: 323 ---HFGEGVVKEIFNRYKKYLTDRN 344
+G+ E+ + +YL+ RN
Sbjct: 375 AAILLSKGIEPEMIAQEIEYLSTRN 399
>OTCC_PSEAE (P08308) Ornithine carbamoyltransferase, catabolic (EC
2.1.3.3) (OTCase)
Length = 335
Score = 30.8 bits (68), Expect = 5.6
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 39/221 (17%)
Query: 112 FKEKLLDEMGTEMGPCFFSGVPGSFHGRIFPLQSLHFV-----HSSYSLHWLSKVPEG-A 165
FK+++++E+ G F+G+ +H P Q L V HS LH +S G A
Sbjct: 109 FKQEIVEELAKFAGVPVFNGLTDEYH----PTQMLADVLTMREHSDKPLHDISYAYLGDA 164
Query: 166 DNNKGN--IYISSTSPLNVVKAYYKQFQIDFSLFLKCR---------------AEEIVEG 208
NN GN + I + ++V A K +C+ +E V+G
Sbjct: 165 RNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKG 224
Query: 209 GCMIITFVGRKSDNPTSKECCYIWELLAMALNDMVLEGIIKEEKLNTFNIPIYYPSPSEV 268
+ T V P I ELL +N +++ +P ++ S ++V
Sbjct: 225 VDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKV 284
Query: 269 KLEVITEGSFVMNQLEISEVNWNARDDFESESFGDDGYNVA 309
++ + + N +E++E D FES YN+A
Sbjct: 285 GKQIAEQYPNLANGIEVTE------DVFESP------YNIA 313
>EDA_MOUSE (O54693) Ectodysplasin A (EDA protein homolog) (Tabby
protein)
Length = 391
Score = 30.8 bits (68), Expect = 5.6
Identities = 19/71 (26%), Positives = 36/71 (49%), Gaps = 4/71 (5%)
Query: 246 GIIKEEKLNTFNIPIYYPSPSEVKLEVITEGS-FVMNQLEISEVNWNARDDFESESFGDD 304
G++ + T N ++ P +LEV+ +G+ F+ +Q+E+ +N+ DF S D
Sbjct: 269 GVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFT---DFASYEVVVD 325
Query: 305 GYNVAQCMRAL 315
QC R++
Sbjct: 326 EKPFLQCTRSI 336
>EDA_HUMAN (Q92838) Ectodysplasin A (Ectodermal dysplasia protein)
(EDA protein)
Length = 391
Score = 30.8 bits (68), Expect = 5.6
Identities = 19/71 (26%), Positives = 36/71 (49%), Gaps = 4/71 (5%)
Query: 246 GIIKEEKLNTFNIPIYYPSPSEVKLEVITEGS-FVMNQLEISEVNWNARDDFESESFGDD 304
G++ + T N ++ P +LEV+ +G+ F+ +Q+E+ +N+ DF S D
Sbjct: 269 GVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFT---DFASYEVVVD 325
Query: 305 GYNVAQCMRAL 315
QC R++
Sbjct: 326 EKPFLQCTRSI 336
>EDA_BOVIN (Q9BEG5) Ectodysplasin A (Ectodysplasin 1) (Ectodermal
dysplasia protein)
Length = 391
Score = 30.8 bits (68), Expect = 5.6
Identities = 19/71 (26%), Positives = 36/71 (49%), Gaps = 4/71 (5%)
Query: 246 GIIKEEKLNTFNIPIYYPSPSEVKLEVITEGS-FVMNQLEISEVNWNARDDFESESFGDD 304
G++ + T N ++ P +LEV+ +G+ F+ +Q+E+ +N+ DF S D
Sbjct: 269 GVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFT---DFASYEVVVD 325
Query: 305 GYNVAQCMRAL 315
QC R++
Sbjct: 326 EKPFLQCTRSI 336
>DHX9_CAEEL (Q22307) Probable ATP-dependent RNA helicase A (Nuclear
DNA helicase II) (NDH II)
Length = 1301
Score = 30.8 bits (68), Expect = 5.6
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 23/126 (18%)
Query: 62 GSNTLLVILDIIKVVEKLCRKLNHKSPEYMIYLNDLPGNDFNTIF----------TSLDI 111
GS + +++++E R ++H + ++++ D +T F T D+
Sbjct: 477 GSIMFCTVGVLLRMMENGLRGISH------VIIDEIHERDVDTDFVLIVLREMISTYRDL 530
Query: 112 FKEKLLDEMGTEMGPCFFSGVPG-------SFHGRIFPLQSLHFVHSSYSLHWLSKVPEG 164
+ + T++ FFS +P + HGR FP+QS + ++L + + P+
Sbjct: 531 RVVLMSATIDTDLFTNFFSSIPDVGPTPVITMHGRTFPVQSFYLEDILHNLQHMPEEPDQ 590
Query: 165 ADNNKG 170
KG
Sbjct: 591 KKRKKG 596
>PPIC_MOUSE (P30412) Peptidyl-prolyl cis-trans isomerase C (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin C)
Length = 212
Score = 30.4 bits (67), Expect = 7.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 135 SFHGRIFPLQSLHFVHSSYSLHWLSKVPEGADNNKGNIYISSTSP 179
S +G FP ++ H Y + W+S G D N +I+ T P
Sbjct: 111 SIYGETFPDENFKLKH--YGIGWVSMANAGPDTNGSQFFITLTKP 153
>PPIC_HUMAN (P45877) Peptidyl-prolyl cis-trans isomerase C (EC
5.2.1.8) (PPIase) (Rotamase) (Cyclophilin C)
Length = 212
Score = 30.4 bits (67), Expect = 7.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 135 SFHGRIFPLQSLHFVHSSYSLHWLSKVPEGADNNKGNIYISSTSP 179
S +G FP ++ H Y + W+S G D N +I+ T P
Sbjct: 111 SIYGETFPDENFKLKH--YGIGWVSMANAGPDTNGSQFFITLTKP 153
>POLN_CACV4 (Q8V736) Non-structural polyprotein [Contains: Unknown
protein; Helicase (2C like protein); 3A-like protein;
Viral genome-linked protein (VPg); Protease P3C (EC
3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA
polymerase (EC 2.7.7.48)]
Length = 1929
Score = 30.0 bits (66), Expect = 9.5
Identities = 19/66 (28%), Positives = 30/66 (44%), Gaps = 14/66 (21%)
Query: 276 GSFVMNQLEIS--EVNWNARDDFESESFGDDGYNVAQCMRALAEPLLVSHFGEGVVKEIF 333
GS ++ LE +VNWN D + ++GDDG +V +F V+ E+F
Sbjct: 1725 GSAIIQVLESKGVDVNWNIYDTIDLFTYGDDGV------------YIVPNFVHSVMPEVF 1772
Query: 334 NRYKKY 339
+ Y
Sbjct: 1773 SCLSSY 1778
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,224,192
Number of Sequences: 164201
Number of extensions: 1869683
Number of successful extensions: 4107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4107
Number of HSP's gapped (non-prelim): 9
length of query: 362
length of database: 59,974,054
effective HSP length: 111
effective length of query: 251
effective length of database: 41,747,743
effective search space: 10478683493
effective search space used: 10478683493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC125480.15