BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC125478.7 - phase: 0 
         (357 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RNFG_BUCAI (P57217) Electron transport complex protein rnfG homolog    34  0.65
Y831_METJA (Q58241) Hypothetical protein MJ0831                        30  7.2
RPOC_ANASP (P22704) DNA-directed RNA polymerase gamma chain (EC ...    30  7.2
MY9B_HUMAN (Q13459) Myosin IXb (Unconventional myosin-9b)              30  9.4

>RNFG_BUCAI (P57217) Electron transport complex protein rnfG homolog
          Length = 164

 Score = 33.9 bits (76), Expect = 0.65
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 13/111 (11%)

Query: 119 RSNKRIELIYLTTMADGYAGMRNYSWGAMTLAYLYGELADACRLGHR---ALGGSVTLLT 175
           ++ K +  I  TT  DGY+G  N     +  AY  GE+ +A  L H+    +G  + L  
Sbjct: 34  KNKKPVAAIVETTAPDGYSGAIN----MLVAAYFNGEIINARVLSHKETPGIGDKIDLSI 89

Query: 176 AWFLAHFPGFF--SVDLNTDYLENYSVAARWKLQKGHGEGITYRSLLDRIQ 224
           + ++  F G +  S++     L  Y      K+++  G  IT +S+ + I+
Sbjct: 90  SNWITRFTGMYVASIEDKDFKLRKYG----GKIEQFTGATITPQSVTNSIK 136


>Y831_METJA (Q58241) Hypothetical protein MJ0831
          Length = 432

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 10/28 (35%), Positives = 18/28 (63%)

Query: 256 VRRVYRHLPERVLRQYGYVQTIPRHPTD 283
           + +V + + E++L  YGY++ I  H TD
Sbjct: 8   IEKVTKAIKEKILNHYGYIRVITHHDTD 35


>RPOC_ANASP (P22704) DNA-directed RNA polymerase gamma chain (EC
           2.7.7.6) (RNAP gamma subunit) (Transcriptase gamma
           chain) (RNA polymerase gamma subunit)
          Length = 625

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 15/91 (16%)

Query: 161 RLGHRALGGSVTLLTAWFLAHFPGFFSVDLNTD--------YLENYSVAARWKLQKGHGE 212
           R+G+  L   V  +  W+L   P + S+ L+          Y  +Y V     L  G+ E
Sbjct: 102 RMGYIKLAAPVAHV--WYLKGIPSYISILLDMPLRDVEQIVYFNSYVV-----LSPGNAE 154

Query: 213 GITYRSLLDRIQLDDVCWRSYEEHREIQDFE 243
            +TY+ LL   Q  ++  + Y E  ++Q  E
Sbjct: 155 TLTYKQLLSEDQWLEIEDQIYSEDSQLQGVE 185


>MY9B_HUMAN (Q13459) Myosin IXb (Unconventional myosin-9b)
          Length = 2158

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 13/42 (30%), Positives = 23/42 (53%), Gaps = 1/42 (2%)

Query: 229  CWRSYEEHREIQDFE-EVFWYSRWIMCGVRRVYRHLPERVLR 269
            CWRSY   R ++  +  V+  + W     R++YRH  + ++R
Sbjct: 989  CWRSYRVRRALERTQAAVYLQAAWRGYWQRKLYRHQKQSIIR 1030


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,160,039
Number of Sequences: 164201
Number of extensions: 2028860
Number of successful extensions: 3816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3815
Number of HSP's gapped (non-prelim): 4
length of query: 357
length of database: 59,974,054
effective HSP length: 111
effective length of query: 246
effective length of database: 41,747,743
effective search space: 10269944778
effective search space used: 10269944778
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 66 (30.0 bits)