BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125368.2 - phase: 0
(430 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TRUB_ONYPE (Q6YQY6) tRNA pseudouridine synthase B (EC 4.2.1.70) ... 35 0.37
COX1_RICPR (O54069) Probable cytochrome c oxidase polypeptide I ... 33 1.8
Y420_METJA (Q57863) Hypothetical protein MJ0420 32 4.1
IP3T_RAT (Q63269) Inositol 1,4,5-trisphosphate receptor type 3 (... 32 4.1
IP3T_HUMAN (Q14573) Inositol 1,4,5-trisphosphate receptor type 3... 32 4.1
Y630_RICPR (Q9ZCT3) Hypothetical UPF0118 protein RP630 31 5.4
MRAY_PSEAE (Q9HVZ8) Phospho-N-acetylmuramoyl-pentapeptide-transf... 30 9.2
>TRUB_ONYPE (Q6YQY6) tRNA pseudouridine synthase B (EC 4.2.1.70)
(tRNA pseudouridine 55 synthase) (Psi55 synthase)
(Pseudouridylate synthase) (Uracil hydrolyase)
Length = 283
Score = 35.0 bits (79), Expect = 0.37
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 4 VTIHHDEETPLVVESPIQLQPHKSHSRDVHILSIAFVLIFLAYGAAQNLQST------LN 57
V IHH E+T L + H S + L+ L YGA LQ T L
Sbjct: 144 VFIHHFEKTSLFCRDQVDFLAHVSKGTYIRSLARDLALQLNTYGALLRLQRTAIGTHLLQ 203
Query: 58 TEEDLGTTSLGILYLSFTFFSVFASLVV 85
+ + L L L TFF+ + L++
Sbjct: 204 NAKTIENLELNDLILDSTFFAAYDELIL 231
>COX1_RICPR (O54069) Probable cytochrome c oxidase polypeptide I (EC
1.9.3.1) (Cytochrome AA3 subunit 1)
Length = 534
Score = 32.7 bits (73), Expect = 1.8
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 39 FVLIFLAYGAAQNLQSTLNTEEDLGTTSL--GILYLSFTFFSVFASLVVRILGSKNALII 96
+++I +G + ST + + G + ++ + F F V+A + + S NALI
Sbjct: 264 YIVILPGFGIVSQVISTFSRKPIFGYQGMVGAMVIIGFVGFIVWAHHMFTVGLSYNALIY 323
Query: 97 GTSGYWLYVAANLKPNWYTLVPASVYLGFCASIIWVGQITISTKVL------*LVTSTGN 150
T+G + VP + + + +W G IT T +L L T G
Sbjct: 324 FTAGTMIIA-----------VPTGIKIFSWIATMWGGSITFPTPMLFAIGFIILFTIGGV 372
Query: 151 SGLFMHSISLLEILLHLLYSVM 172
+G+ + S S L+ +LH Y V+
Sbjct: 373 TGIIL-SNSALDRVLHDTYYVV 393
>Y420_METJA (Q57863) Hypothetical protein MJ0420
Length = 380
Score = 31.6 bits (70), Expect = 4.1
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 37 IAFVLIFLAYGAA----QNLQSTLNTEEDLGTTSLGILY---LSFTFFSVFASLVVRILG 89
IAF+LI L YGA ++ T+N+ E L S+G L + + + A +++ +LG
Sbjct: 134 IAFLLIVLIYGAIPLFNYEVRMTINS-EPLRLISMGALIYAGIENKVYFIIAFMILVLLG 192
Query: 90 SKNALIIGTSGYWLYVAANLKPNWYTLVPAS--VYLGFCASII 130
K +++ Y +Y N+ + L+ + ++LG II
Sbjct: 193 YKAGVLMLFIAYIIYRYRNILFKYMVLLAFALLIFLGIMGKII 235
>IP3T_RAT (Q63269) Inositol 1,4,5-trisphosphate receptor type 3 (Type
3 inositol 1,4,5-trisphosphate receptor) (Type 3 InsP3
receptor) (IP3 receptor isoform 3) (InsP3R3) (IP3R-3)
Length = 2670
Score = 31.6 bits (70), Expect = 4.1
Identities = 30/112 (26%), Positives = 55/112 (48%), Gaps = 9/112 (8%)
Query: 108 NLKPNWYTLVPASVY-LGFCASIIWVGQITISTKVL*LVTSTGNSGLFMHSISLLEILLH 166
+++P LV S+Y LG ++ +G + ++ K++ +V+ GN G F+ + + +
Sbjct: 2259 SVRPLIVALVLRSIYYLGIGPTLNILGALNLTNKIVFVVSFVGNRGTFIRGYKAMVMDME 2318
Query: 167 LLYSVMGRGEVPTAPL----YCLLYSFSL*PLVQY*CSSCINELVIVKKNTR 214
LY V G + T+ L + L YS L L+ Y + N + V +N R
Sbjct: 2319 FLYHV---GYILTSVLGLFAHELFYSILLFDLI-YREETLFNVIKSVTRNGR 2366
>IP3T_HUMAN (Q14573) Inositol 1,4,5-trisphosphate receptor type 3
(Type 3 inositol 1,4,5-trisphosphate receptor) (Type 3
InsP3 receptor) (IP3 receptor isoform 3) (InsP3R3)
Length = 2671
Score = 31.6 bits (70), Expect = 4.1
Identities = 29/112 (25%), Positives = 55/112 (48%), Gaps = 9/112 (8%)
Query: 108 NLKPNWYTLVPASVY-LGFCASIIWVGQITISTKVL*LVTSTGNSGLFMHSISLLEILLH 166
+++P L+ S+Y LG ++ +G + ++ K++ +V+ GN G F+ + + +
Sbjct: 2260 SIRPLIVALILRSIYYLGIGPTLNILGALNLTNKIVFVVSFVGNRGTFIRGYKAMVMDME 2319
Query: 167 LLYSVMGRGEVPTAPL----YCLLYSFSL*PLVQY*CSSCINELVIVKKNTR 214
LY V G + T+ L + L YS L L+ Y + N + V +N R
Sbjct: 2320 FLYHV---GYILTSVLGLFAHELFYSILLFDLI-YREETLFNVIKSVTRNGR 2367
>Y630_RICPR (Q9ZCT3) Hypothetical UPF0118 protein RP630
Length = 351
Score = 31.2 bits (69), Expect = 5.4
Identities = 20/75 (26%), Positives = 36/75 (47%), Gaps = 1/75 (1%)
Query: 37 IAFVLIFLAYGAAQNLQSTLNTEEDLGTTSLGILYLSFTFFSVFASLVVRILGSKNALII 96
IAF++ +L A ++S L L ++ + +++LS FF +F L+ I G I
Sbjct: 31 IAFIISYLLQPAIYFIESKLEISNKLASSIIYLIFLSI-FFLIFTILIPIIYGQIFTFIN 89
Query: 97 GTSGYWLYVAANLKP 111
Y Y+ + + P
Sbjct: 90 NIPKYKNYLQSEILP 104
>MRAY_PSEAE (Q9HVZ8)
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC
2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
Length = 360
Score = 30.4 bits (67), Expect = 9.2
Identities = 22/79 (27%), Positives = 37/79 (45%), Gaps = 12/79 (15%)
Query: 67 LGILYLSFTFFSVFASL-VVRILGSKNALII-------GTSGYWLYVAANLKPNWYTLVP 118
LGI ++ T+F + S V + + L I G G + Y++ N+K Y L+P
Sbjct: 172 LGIFFVVLTYFVIVGSSNAVNLTDGLDGLAIMPTVMVAGALGIFCYLSGNVKFAEYLLIP 231
Query: 119 ----ASVYLGFCASIIWVG 133
A + FCA+++ G
Sbjct: 232 NVPGAGELIVFCAALVGAG 250
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.344 0.150 0.524
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,018,679
Number of Sequences: 164201
Number of extensions: 1715545
Number of successful extensions: 6452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6451
Number of HSP's gapped (non-prelim): 10
length of query: 430
length of database: 59,974,054
effective HSP length: 113
effective length of query: 317
effective length of database: 41,419,341
effective search space: 13129931097
effective search space used: 13129931097
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 67 (30.4 bits)
Medicago: description of AC125368.2