BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124972.5 - phase: 0 
         (222 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

IDHP_PIG (P33198) Isocitrate dehydrogenase [NADP], mitochondrial...    33  0.41
NPL4_RAT (Q9ES54) NPL4 protein                                         32  0.91
IDHP_HUMAN (P48735) Isocitrate dehydrogenase [NADP], mitochondri...    32  1.2
YAB9_YEAST (P31380) Hypothetical 128.5 kDa helicase in ATS1-TPD3...    32  1.5
IDHP_BOVIN (Q04467) Isocitrate dehydrogenase [NADP], mitochondri...    31  2.6
G123_HUMAN (Q86SQ6) Probable G protein-coupled receptor 123            31  2.6
EX5B_CHLMU (Q9PLT8) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)    31  2.6
EX5B_CHLTR (O84645) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)    30  3.4
NPL4_MOUSE (P60670) NPL4 protein                                       30  5.9
Y293_BUCAI (P57380) Hypothetical protein BU293                         29  7.7
CCP3_HUMAN (Q9UKA8) Calcipressin 3 (Down syndrome candidate regi...    29  7.7

>IDHP_PIG (P33198) Isocitrate dehydrogenase [NADP], mitochondrial
           precursor (EC 1.1.1.42) (Oxalosuccinate decarboxylase)
           (IDH) (NADP+-specific ICDH) (IDP) (ICD-M) (Fragment)
          Length = 421

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 148 PPFMATKDTVTKAEMKKFRGLHVVNDEFEDILKLYLTCNFSKVKDFHGLHVVNDEFEDIL 207
           P +M+TK+T+ KA   +F+      D F++I + +   +F K K ++   +++D    +L
Sbjct: 214 PLYMSTKNTILKAYDGRFK------DIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVL 267

Query: 208 KS 209
           KS
Sbjct: 268 KS 269


>NPL4_RAT (Q9ES54) NPL4 protein
          Length = 608

 Score = 32.3 bits (72), Expect = 0.91
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 108 FPVPINNNKASFDSLASVKSLNFVRVSPFEEYSSPPTTPPPPFMATKDTVTKAEMKKFRG 167
           F V IN NK    + +S KSL+ +++   +     P++   P  +  +T T   +K F  
Sbjct: 44  FSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFPSSLAGP-SSEMETSTSVGLKAFGA 102

Query: 168 LHVVNDEFEDIL 179
            HVV DE +  L
Sbjct: 103 PHVVEDEIDQYL 114


>IDHP_HUMAN (P48735) Isocitrate dehydrogenase [NADP], mitochondrial
           precursor (EC 1.1.1.42) (Oxalosuccinate decarboxylase)
           (IDH) (NADP+-specific ICDH) (IDP) (ICD-M)
          Length = 452

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 148 PPFMATKDTVTKAEMKKFRGLHVVNDEFEDILKLYLTCNFSKVKDFHGLHVVNDEFEDIL 207
           P +M+TK+T+ KA   +F+      D F++I   +   +F K K ++   +++D    +L
Sbjct: 245 PLYMSTKNTILKAYDGRFK------DIFQEIFDKHYKTDFDKNKIWYEHRLIDDMVAQVL 298

Query: 208 KS 209
           KS
Sbjct: 299 KS 300


>YAB9_YEAST (P31380) Hypothetical 128.5 kDa helicase in ATS1-TPD3
           intergenic region
          Length = 1131

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 21/66 (31%), Positives = 30/66 (44%), Gaps = 3/66 (4%)

Query: 113 NNNKASFDSLASVKSLNFVRVSPFEEYSSPPTTPPPPFMATKDTVTKAEMKKFRGLHVVN 172
           NNN A  D+ +  K      V  F+E S+ PT  P P    ++T       K +   VV 
Sbjct: 424 NNNTAGADATSKEKEDTKAVVEGFDETSAEPTPAPAPAPVERETKRIRNTTKPK---VVE 480

Query: 173 DEFEDI 178
           DE +D+
Sbjct: 481 DEDDDV 486


>IDHP_BOVIN (Q04467) Isocitrate dehydrogenase [NADP], mitochondrial
           precursor (EC 1.1.1.42) (Oxalosuccinate decarboxylase)
           (IDH) (NADP+-specific ICDH) (IDP) (ICD-M)
          Length = 452

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 148 PPFMATKDTVTKAEMKKFRGLHVVNDEFEDILKLYLTCNFSKVKDFHGLHVVNDEFEDIL 207
           P +M+TK+T+ KA   +F+      D F+ I + +    F K K ++   +++D    +L
Sbjct: 245 PLYMSTKNTILKAYDGRFK------DIFQAIFEKHYKTEFDKHKIWYEHRLIDDMVAQVL 298

Query: 208 KS 209
           KS
Sbjct: 299 KS 300


>G123_HUMAN (Q86SQ6) Probable G protein-coupled receptor 123
          Length = 1280

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 1/46 (2%)

Query: 104 RVFLFPVPINNN-KASFDSLASVKSLNFVRVSPFEEYSSPPTTPPP 148
           R++LFP  + N    + DS   + S N V  +   + S PP TPPP
Sbjct: 151 RLYLFPTFLGNKLPEAADSFGEIASGNSVIFTSVLQSSHPPGTPPP 196


>EX5B_CHLMU (Q9PLT8) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)
          Length = 1026

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 1/58 (1%)

Query: 136 FEEYSSPPTTPPPPFMATKDTVTKAEMKKFRGLHVVNDEFEDILKLYLTCNFSKVKDF 193
           F +  S P TP PP++++++T  K    K R      DE  +I  ++  C F+  + F
Sbjct: 78  FSQALSHPETPLPPYVSSQETKVKQLYXKXRNSLATLDEM-NIFTIHGXCRFTLEQHF 134


>EX5B_CHLTR (O84645) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)
          Length = 1026

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 18/61 (29%), Positives = 30/61 (48%), Gaps = 1/61 (1%)

Query: 133 VSPFEEYSSPPTTPPPPFMATKDTVTKAEMKKFRGLHVVNDEFEDILKLYLTCNFSKVKD 192
           +S F +  S P TP PP++++ +T  K    K R      DE  +I  ++  C F+  + 
Sbjct: 75  LSLFSQALSHPGTPLPPYISSSETKVKQLYMKIRNSLATLDEM-NIFTIHGFCRFTLEQH 133

Query: 193 F 193
           F
Sbjct: 134 F 134


>NPL4_MOUSE (P60670) NPL4 protein
          Length = 608

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 108 FPVPINNNKASFDSLASVKSLNFVRVSPFEEYSSPPTTPPPPFMATKDTVTKAEMKKFRG 167
           F V IN NK    + +S KSL+ +++   +     P++   P  +  +T T   +K F  
Sbjct: 44  FSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFPSSLAGP-SSEMETSTSVGLKAFGA 102

Query: 168 LHVVNDEFEDIL 179
            +VV DE +  L
Sbjct: 103 PNVVEDEIDQYL 114


>Y293_BUCAI (P57380) Hypothetical protein BU293
          Length = 334

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 177 DILKLYLTCNFSKVKDFHGLHVVNDEFEDILKSFW 211
           D+ K+Y   N  KVK+   +HV+ + F   LK +W
Sbjct: 201 DVWKIYKKNNVIKVKNIQNIHVLKNRF---LKDYW 232


>CCP3_HUMAN (Q9UKA8) Calcipressin 3 (Down syndrome candidate region
           1-like protein 2) (Myocyte-enriched calcineurin
           interacting protein 3) (MCIP3)
          Length = 241

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 10/129 (7%)

Query: 39  VDRNINFSDLMAKLSTFMFSDVCFKYQLLGEDFDALIPIYNEEDLNHIMFEYDRMCHFSR 98
           +D  ++ SDL   L      +  F+ +   E F+AL  IY+++    +   + R+     
Sbjct: 36  LDEMMDLSDLPTSLFACSVHEAVFEAREQKERFEALFTIYDDQVTFQLFKSFRRVRINFS 95

Query: 99  KP---AWLRVFLFPVPINNNK-----ASFDSLASVKSLNF-VRVSPFEEY-SSPPTTPPP 148
           KP   A  R+ L     N  K     A       V+  ++ +   P +++  SPP +PP 
Sbjct: 96  KPEAAARARIELHETDFNGQKLKLYFAQVQMSGEVRDKSYLLPPQPVKQFLISPPASPPV 155

Query: 149 PFMATKDTV 157
            +  ++D +
Sbjct: 156 GWKQSEDAM 164


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,564,340
Number of Sequences: 164201
Number of extensions: 1188845
Number of successful extensions: 5520
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5516
Number of HSP's gapped (non-prelim): 12
length of query: 222
length of database: 59,974,054
effective HSP length: 106
effective length of query: 116
effective length of database: 42,568,748
effective search space: 4937974768
effective search space used: 4937974768
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)