BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124966.6 + phase: 0
(176 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPC1_PLAFA (P27625) DNA-directed RNA polymerase III largest subu... 43 3e-04
RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Ar... 41 0.002
EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABR... 37 0.023
TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic helix-loop... 37 0.031
ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein 36 0.052
ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein 36 0.052
SLD3_SCHPO (Q09761) DNA replication regulator sld3 32 0.58
MYCM_XENLA (P35805) L-myc 2 protein 32 0.58
CUDA_DICDI (O00841) Putative transcriptional regulator cudA 32 0.58
SEC3_YEAST (P33332) Exocyst complex component SEC3 (PSL1 protein) 32 0.98
YOR5_PRRSV (Q04569) Hypothetical 22.4 kDa protein (ORF5) 31 1.3
YG46_YEAST (P53301) Hypothetical 52.8 kDa protein in BUB1-HIP1 i... 31 1.3
RR3_CHLRE (Q08365) Chloroplast 30S ribosomal protein S3 (ORF 712) 31 1.3
YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 ... 30 2.9
RTG3_YEAST (P38165) Retrograde regulation protein 3 30 2.9
ANT1_ONCVO (P21249) Major antigen 30 2.9
SRB9_SCHPO (Q9HE02) Suppressor of RNA polymerase B srb9 30 3.7
OAR_MYXXA (P38370) OAR protein precursor 30 3.7
MYCL_XENLA (Q05404) L-myc 1 protein 30 3.7
MYCL_MOUSE (P10166) L-myc proto-oncogene protein 30 3.7
>RPC1_PLAFA (P27625) DNA-directed RNA polymerase III largest subunit
(EC 2.7.7.6)
Length = 2339
Score = 43.1 bits (100), Expect = 3e-04
Identities = 33/144 (22%), Positives = 68/144 (46%), Gaps = 16/144 (11%)
Query: 5 KSHFYLDEDKFQREIVQHQPSFSFESGNSQSSTIQYMN---NIVDNVCVTNTVHENIAQE 61
K+ F++++ K + H+ + E N+Q IQY N N + + + NT H + +
Sbjct: 1337 KAKFFIEKKKGK----MHECNDDIEYNNTQYDNIQYNNISCNYIKSQNLENT-HHQVNND 1391
Query: 62 YTWATNSQQLPPSQY--ILSFENSTMQPSPNSDIATCSSIMVQETTTLNNNVSSELPKII 119
++ N+ LPP +Y I F N ++ ++M ++ LNN+ + +
Sbjct: 1392 LSFIKNNVILPPKEYHSIFHFVNDYR------NVVEIKNLMDKKKIFLNNSEKNVVQSKY 1445
Query: 120 KKRTKNLRSSCEMQDHIMAERKRR 143
+ +KNL+ E+ ++I K++
Sbjct: 1446 NRMSKNLKKKIEIINNIYRNEKKK 1469
>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous
Arabidopsis protein-1) (RAP-1) (Basic helix-loop-helix
protein 6) (bHLH6) (AtbHLH006) (rd22BP1)
Length = 623
Score = 40.8 bits (94), Expect = 0.002
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 77 ILSFENSTMQPSPNSDIATCSSIMVQETTTLNNNVSSELPKIIKKRTKNLRSSCEMQDHI 136
+LSF + T S +SD+ E + + + PK ++ N R E +H+
Sbjct: 406 VLSFGDKTAGESDHSDL---------EASVVKEVAVEKRPKKRGRKPANGRE--EPLNHV 454
Query: 137 MAERKRRQVLTERFIALSATIPGLKKV 163
AER+RR+ L +RF AL A +P + K+
Sbjct: 455 EAERQRREKLNQRFYALRAVVPNVSKM 481
>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3)
(Basic helix-loop-helix protein 2) (bHLH2) (AtbHLH002)
(AtMyc-146)
Length = 596
Score = 37.0 bits (84), Expect = 0.023
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 114 ELPKIIKKRTKNLRSSCEMQDHIMAERKRRQVLTERFIALSATIPGLKKV 163
E+P + KK + E +H ++E+KRR+ L ERF+ L + IP + K+
Sbjct: 385 EVPLMNKKEELLPDTPEETGNHALSEKKRREKLNERFMTLRSIIPSISKI 434
>TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic
helix-loop-helix protein 42) (bHLH42) (AtbHLH042)
Length = 518
Score = 36.6 bits (83), Expect = 0.031
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 123 TKNLRSSCEMQDHIMAERKRRQVLTERFIALSATIPGLKKV 163
TK+ R E H++AER+RR+ L E+FI L + +P + K+
Sbjct: 352 TKDKRLPREDLSHVVAERRRREKLNEKFITLRSMVPFVTKM 392
>ARRS_MAIZE (P13027) Anthocyanin regulatory R-S protein
Length = 612
Score = 35.8 bits (81), Expect = 0.052
Identities = 13/32 (40%), Positives = 24/32 (74%)
Query: 133 QDHIMAERKRRQVLTERFIALSATIPGLKKVS 164
++H+M+ERKRR+ L E F+ L + +P + +V+
Sbjct: 417 KNHVMSERKRREKLNEMFLVLKSLLPSIHRVN 448
>ARLC_MAIZE (P13526) Anthocyanin regulatory Lc protein
Length = 610
Score = 35.8 bits (81), Expect = 0.052
Identities = 13/32 (40%), Positives = 24/32 (74%)
Query: 133 QDHIMAERKRRQVLTERFIALSATIPGLKKVS 164
++H+M+ERKRR+ L E F+ L + +P + +V+
Sbjct: 415 KNHVMSERKRREKLNEMFLVLKSLLPSIHRVN 446
>SLD3_SCHPO (Q09761) DNA replication regulator sld3
Length = 668
Score = 32.3 bits (72), Expect = 0.58
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 59 AQEYTWATNSQQLPPSQYILSFENSTMQPSPNSDIATCSSIMVQETTTLNNNVSSELPKI 118
++E + L S+ + E S + S S SI+VQ T +++V +ELP
Sbjct: 564 SEESVQPKTTSSLSRSKTLSILEGSVSKRSEPS----MDSILVQATPRKSSSVITELPDT 619
Query: 119 -IKKRTKNLRSSCEMQDHIMAERKRRQVLTERFIALSATIPGLKK 162
IK + + S+C +++HI+ E + + T P KK
Sbjct: 620 PIKMNSLDKASACTVENHIVTESPAHKSNKAQLFVCVPTTPVKKK 664
>MYCM_XENLA (P35805) L-myc 2 protein
Length = 344
Score = 32.3 bits (72), Expect = 0.58
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 32/160 (20%)
Query: 11 DEDKFQREIVQHQPSFSFESGNSQSSTIQYMNNIVDNVCVTNTVHENIAQEYTWATNSQQ 70
+ED+ V+ + S+ G Q TI + ++H+ Q++ +A +
Sbjct: 158 EEDEIDVVTVEKRKSY----GGRQPVTITVRADPTATKLFHISIHQ---QQHNYAA---R 207
Query: 71 LPPSQYILSFEN---STMQPSPNS-----DIATCSSIMVQETTTLNNNVSSELPKIIKKR 122
LPP +S ++ ST++ P ++ CS M ++ S +L K
Sbjct: 208 LPPEPNTMSPQHNFHSTVKEEPGEVTSPPELQPCSPQMPDSPLASGSSDSEDLAK----- 262
Query: 123 TKNLRSSCEMQDHIMAERKRRQVLTERFIALSATIPGLKK 162
++H ERKRR L RF+AL +P L +
Sbjct: 263 ---------RKNHNYLERKRRNDLRSRFLALREEVPSLSR 293
>CUDA_DICDI (O00841) Putative transcriptional regulator cudA
Length = 791
Score = 32.3 bits (72), Expect = 0.58
Identities = 30/137 (21%), Positives = 56/137 (39%), Gaps = 7/137 (5%)
Query: 30 SGNSQSSTIQYMNNIVDNVCVTNTVHENIAQEYTWATNSQQLPPSQYILSFENSTMQPSP 89
+ N+ ++ NN +N N N+ + +TN+ Q+ Q S N T PS
Sbjct: 89 NANNNNNNNNSNNNNSNNNNNNNNASNNLTSNKSSSTNTPQI--GQLQASPANLTNSPS- 145
Query: 90 NSDIATCSSIMVQETTTLNNNVSSELPKIIKKRTKNLRSSCEMQDHIMAERKRRQVLTER 149
A S I + ++LN+ ++ P ++ T N R Q ++ E+ + + +
Sbjct: 146 ----AISSPITISNNSSLNSPSTTSSPNLLLNGTSNKRIMISQQTCLVEEKFSKNGVQKN 201
Query: 150 FIALSATIPGLKKVSFL 166
+ P L +S L
Sbjct: 202 VHVVVKNNPFLLTLSLL 218
>SEC3_YEAST (P33332) Exocyst complex component SEC3 (PSL1 protein)
Length = 1336
Score = 31.6 bits (70), Expect = 0.98
Identities = 34/158 (21%), Positives = 68/158 (42%), Gaps = 16/158 (10%)
Query: 1 MGYDKSHFYLDEDKFQREIVQHQPSFSFESGNSQSSTIQYMNNIVDNVCVTNTVHENIAQ 60
+ +D S FYLDE +QR ++ ++P +S T + N +V +V +
Sbjct: 229 VNWDLSLFYLDERSYQRAVITNRPG---SVSPIKSPTSNFTTNTTQSV---GSVPFSAPT 282
Query: 61 EYTWATNSQQLPPSQYILSFE----NSTMQPSPNSDIATCSSIMVQ-ETTTLNNNVSSEL 115
E T + ++ + P S E ++ +P S +T + + + E +EL
Sbjct: 283 ERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSNSTLNEVNKRYELEQQQQQEEAEL 342
Query: 116 PKIIKKRTKNLRSSCEM-----QDHIMAERKRRQVLTE 148
++ +++ L+ EM + I E ++RQ+ E
Sbjct: 343 RRLEEQKRLQLQKENEMKRLEEERRIKQEERKRQMELE 380
>YOR5_PRRSV (Q04569) Hypothetical 22.4 kDa protein (ORF5)
Length = 201
Score = 31.2 bits (69), Expect = 1.3
Identities = 20/56 (35%), Positives = 31/56 (54%), Gaps = 4/56 (7%)
Query: 25 SFSFESGNSQSSTIQYMNNIVDNVCVTNTVHENIAQEYTWATNSQQL-PPSQYILS 79
S+SF GN SST QY+ N+ +C N + ++ + WA + L P + +ILS
Sbjct: 28 SWSFADGNGDSSTYQYIYNL--TICELNGT-DWLSSHFGWAVETFVLYPVATHILS 80
>YG46_YEAST (P53301) Hypothetical 52.8 kDa protein in BUB1-HIP1
intergenic region
Length = 507
Score = 31.2 bits (69), Expect = 1.3
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 5/137 (3%)
Query: 4 DKSHFYLDEDKFQREIVQHQPSFSFESGNSQSSTIQYMNNIVDNVCVTNTVHENIAQEYT 63
D Y D+ Q + S S ++ SST+ + + V++TV + +
Sbjct: 278 DGGSIYGRYDQAQEDFAVLANGGSISSSSTSSSTVSSSASSTVSSSVSSTVSSSAS---- 333
Query: 64 WATNSQQLPPSQYILSFENSTMQPSPNSDIATCSSIMVQETTTLNNNVSSELPKIIKKRT 123
+T S + + S +S+ SP+S AT S + + T ++++SS +
Sbjct: 334 -STVSSSVSSTVSSSSSVSSSSSTSPSSSTATSSKTLASSSVTTSSSISSFEKQSSSSSK 392
Query: 124 KNLRSSCEMQDHIMAER 140
K + SS + I + +
Sbjct: 393 KTVASSSTSESIISSTK 409
>RR3_CHLRE (Q08365) Chloroplast 30S ribosomal protein S3 (ORF 712)
Length = 712
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 14 KFQREIVQHQPSFSFESGNSQSSTIQYMNNIVDNVCVTNTVHENI--AQEYTWATNSQQL 71
K +R ++ ++ S + S T +DN+ V+ + N+ ++Y + +Q
Sbjct: 80 KIERGLIPYEIGIQIHSNDCLSIT-----KAIDNIKVSKDLVTNLQKTRKYLFKAGTQ-- 132
Query: 72 PPSQYILSFENSTMQPSPNSDIATCSSIMVQETTTLNNNVSSELPKIIKKRTKNLRSSCE 131
+N++MQ S N ++A + +T L S+ ++KKRT +++
Sbjct: 133 --------LKNASMQVSDNLNVAEG-----ENSTMLKTKTSASGTSVLKKRTFKIQTQKP 179
Query: 132 MQDHIMAERKRRQ 144
+ + + KR+Q
Sbjct: 180 TKGKFVFKGKRKQ 192
>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4
intergenic region
Length = 1140
Score = 30.0 bits (66), Expect = 2.9
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 65 ATNSQQLPPSQYILSFENSTMQPSPNSDIATCSSIMVQETTTLNNNVSSELP 116
+T S+ LP S ILS +S + S + AT SS+ + +++ +++VSSE P
Sbjct: 240 STISETLPFSSTILSITSSPV--SSEAPSATSSSVSSEASSSTSSSVSSEAP 289
>RTG3_YEAST (P38165) Retrograde regulation protein 3
Length = 486
Score = 30.0 bits (66), Expect = 2.9
Identities = 29/145 (20%), Positives = 66/145 (45%), Gaps = 20/145 (13%)
Query: 34 QSSTIQYMNNIVDNVC--VTNTVHENIAQEYTWAT----NSQQLPPSQYILSFENSTMQP 87
Q T M N+ D++ ++++++ ++ T+++ N Q L P+ ++ P
Sbjct: 169 QHGTDDTMYNLTDDLSSSLSSSINSDMMTPNTYSSSFSYNPQSLGPASVSSTYSPKVRSP 228
Query: 88 SPN-------SDIATCSSIMVQET--TTLNNNVSSEL-----PKIIKKRTKNLRSSCEMQ 133
S + S SI T T++++N++ + PKI+ T + + + +
Sbjct: 229 SSSFRAGSFLSSSFRHGSINTPRTRHTSISSNMTENIGPGSVPKILGGLTSDEKLRRKRE 288
Query: 134 DHIMAERKRRQVLTERFIALSATIP 158
H ER+RR+++ ++ L +P
Sbjct: 289 FHNAVERRRRELIKQKIKELGQLVP 313
>ANT1_ONCVO (P21249) Major antigen
Length = 2022
Score = 30.0 bits (66), Expect = 2.9
Identities = 35/178 (19%), Positives = 74/178 (40%), Gaps = 42/178 (23%)
Query: 10 LDEDKFQREIVQHQPSFSFESGNSQSSTIQYMNNIVDNVCVTNTVHENIAQEYTWATNSQ 69
LDE+K E + H+ + E+ S + ++ N + C + + IAQ
Sbjct: 1752 LDEEKRTMENILHETALQREAIESSLNALERENKELHRNCAQ--LQQQIAQ--------- 1800
Query: 70 QLPPSQYILSFENSTMQPSPNSDIATCSSIMVQETTTLNNNVSSE---LPKIIKKRTKNL 126
L EN + ++ +E N+ +E + +II+ R ++L
Sbjct: 1801 --------LELENGNR-------LIQLTNKQREEYDKFAQNMRTEKIQIERIIENRERSL 1845
Query: 127 RSSCE--------MQDHIMAERKRRQVLTERFIA-----LSATIPGLKKVSFLYKPTI 171
+S M+D + +ER+RR+ ++++ ++ L+ T+ G+ +Y T+
Sbjct: 1846 KSRINQLENQLNIMRDQLNSERRRRREISDKILSGEVNKLNVTLSGIPDAYEMYDRTL 1903
>SRB9_SCHPO (Q9HE02) Suppressor of RNA polymerase B srb9
Length = 1223
Score = 29.6 bits (65), Expect = 3.7
Identities = 27/101 (26%), Positives = 41/101 (39%), Gaps = 14/101 (13%)
Query: 24 PSFSFESGNSQSSTIQYMNNIVDNVCVTNTVHENIAQEYT--------WATN--SQQLPP 73
PS S E S + + + +++C TN + ++ EY TN Q P
Sbjct: 543 PSLSTEDLFESFSVAESVTSTDEDICSTNFIQQDFTMEYNHDFFSSSKTPTNISEQSNPD 602
Query: 74 SQY-ILSFENSTM---QPSPNSDIATCSSIMVQETTTLNNN 110
S Y LS + + S N D + S+ +Q T TL N
Sbjct: 603 SNYDTLSLAHQVLMNESKSANFDFSFLKSLDLQPTITLGKN 643
>OAR_MYXXA (P38370) OAR protein precursor
Length = 1061
Score = 29.6 bits (65), Expect = 3.7
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 17/75 (22%)
Query: 33 SQSSTIQYMNNIVD--------NVCVTNTVHENIAQEYTWATNSQ------QLPPSQYIL 78
+QSSTI + ++D +V VT T N+ E T T++Q QLPP Y L
Sbjct: 26 AQSSTI--IGTVIDAQSRQPAADVVVTAT-SPNLQGEQTVVTDAQGNYRIPQLPPGDYTL 82
Query: 79 SFENSTMQPSPNSDI 93
FE +P S I
Sbjct: 83 RFEKEQFKPYARSAI 97
>MYCL_XENLA (Q05404) L-myc 1 protein
Length = 344
Score = 29.6 bits (65), Expect = 3.7
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 11/51 (21%)
Query: 112 SSELPKIIKKRTKNLRSSCEMQDHIMAERKRRQVLTERFIALSATIPGLKK 162
SS+ I+KK+ +H ERKRR L RF+AL +P L +
Sbjct: 254 SSDSEDIVKKK-----------NHNYLERKRRNDLRSRFLALREEVPSLTR 293
>MYCL_MOUSE (P10166) L-myc proto-oncogene protein
Length = 368
Score = 29.6 bits (65), Expect = 3.7
Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Query: 116 PKIIKKRTKNLRSSCEMQDHIMAERKRRQVLTERFIALSATIPGLKKVS 164
PK + T+++ + ++H ERKRR L RF+AL +P L S
Sbjct: 274 PKPVSSDTEDVT---KRKNHNFLERKRRNDLRSRFLALRDQVPTLASCS 319
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.127 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,532,765
Number of Sequences: 164201
Number of extensions: 639151
Number of successful extensions: 2215
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2194
Number of HSP's gapped (non-prelim): 43
length of query: 176
length of database: 59,974,054
effective HSP length: 103
effective length of query: 73
effective length of database: 43,061,351
effective search space: 3143478623
effective search space used: 3143478623
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC124966.6