BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124966.5 - phase: 0
(1309 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 414 e-115
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 414 e-115
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 214 9e-55
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 158 1e-37
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 127 2e-28
YJZ9_YEAST (P47100) Transposon Ty1 protein B 123 3e-27
YMU0_YEAST (Q04670) Transposon Ty1 protein B 123 4e-27
YME4_YEAST (Q04711) Transposon Ty1 protein B 119 4e-26
YMD9_YEAST (Q03434) Transposon Ty1 protein B 117 2e-25
YJZ7_YEAST (P47098) Transposon Ty1 protein B 117 3e-25
YMT5_YEAST (Q04214) Transposon Ty1 protein B 114 2e-24
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 114 2e-24
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 108 7e-23
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 97 2e-19
YBC9_YEAST (P38201) Hypothetical 42.6 kDa protein in AAC2-RPL19B... 45 0.002
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 43 0.006
YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein 40 0.042
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 39 0.093
SGS1_YEAST (P35187) Helicase SGS1 (Helicase TPS1) 37 0.35
TAGB_DICDI (P54683) Prestalk-specific protein tagB precursor (EC... 35 1.0
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 414 bits (1065), Expect = e-115
Identities = 260/751 (34%), Positives = 391/751 (51%), Gaps = 70/751 (9%)
Query: 554 FGGECVLTAAYLINKLPTPILKFKSPHQVLLGSPPSYSSLRVFGCLCFAKNMNIQH-KFD 612
F GE V TA YLIN+ P+ L F+ P +V SYS L+VFGC FA Q K D
Sbjct: 609 FWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLD 668
Query: 613 ERSKPGIFVGYPFNQKGYRIYDMKTRQIYVSRDVQFHETVFPYQDIQSPPFNNAISINTQ 672
++S P IF+GY + GYR++D +++ SRDV F E+ S N I N
Sbjct: 669 DKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFV 728
Query: 673 ILDNEFDDLFTGSPTHPNIPPENSHNDNSNDTIVTISTPEDDASSNPPSFSAESLSNNPP 732
+ P S+N S ++ T E E L
Sbjct: 729 TI------------------PSTSNNPTSAES-TTDEVSEQGEQPGEVIEQGEQLDEGVE 769
Query: 733 STE---MNPPNHRHSQRIRNPPIHLKDYICKINNVTSKINFPLENYLSLSNLSNSHRAFL 789
E H+ +R P + + Y P Y+ +S
Sbjct: 770 EVEHPTQGEEQHQPLRRSERPRVESRRY-------------PSTEYVLIS---------- 806
Query: 790 INIIENKEPKSYSQAMKSVEWRD---AMAKEIQALESNNTWILCPLPEGKSAIGCKWIYK 846
+++EP+S + + E AM +E+++L+ N T+ L LP+GK + CKW++K
Sbjct: 807 ----DDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFK 862
Query: 847 IKYHSDGSIDRYKARLVAKGYSQVQGIDYHDTFAPVAKLVTVRLLLSIAAIKNWPLYQFD 906
+K D + RYKARLV KG+ Q +GID+ + F+PV K+ ++R +LS+AA + + Q D
Sbjct: 863 LKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLD 922
Query: 907 VNNAFLQGDLSEEVYMKLPPGFS-HKKKPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKG 965
V AFL GDL EE+YM+ P GF KK VCKLNKS+YGLKQA RQW+ KF + + +
Sbjct: 923 VKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQT 982
Query: 966 FRQSISDYSL-FTYNCDQTTIFVLVYVDDIIITGNNENAISKIKKFLAQSFSIKDLGNLS 1024
+ ++ SD + F + I +L+YVDD++I G ++ I+K+K L++SF +KDLG
Sbjct: 983 YLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQ 1042
Query: 1025 YILGIEV--SRSKKGIFLCQRKYTLDILSDSGMTGCRPSDFPMEQHLRLR--------PN 1074
ILG+++ R+ + ++L Q KY +L M +P P+ HL+L
Sbjct: 1043 QILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEE 1102
Query: 1075 DGTPLSDPTVYRRHVGRLLYLTV-TRPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKG 1133
G P Y VG L+Y V TRPDI +AV +S+F+++P H++A +LRYL+G
Sbjct: 1103 KGNMAKVP--YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRG 1160
Query: 1134 SVGKGLFLSASSSINLVGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKKQPTISRSS 1193
+ G L S I L GY D+D AG R+S+TGY ISW++K Q ++ S+
Sbjct: 1161 TTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALST 1219
Query: 1194 AEAEYRSLATLSSELQWLKYLLSDLGIDHPQPITIYCDSQAAIHIAENPVFHERTKHIEI 1253
EAEY + E+ WLK L +LG+ H + +YCDSQ+AI +++N ++H RTKHI++
Sbjct: 1220 TEAEYIAATETGKEMIWLKRFLQELGL-HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDV 1278
Query: 1254 DCHFVREKIKSGLIAPSYIRSSDQLADIFTK 1284
H++RE + + I +++ AD+ TK
Sbjct: 1279 RYHWIREMVDDESLKVLKISTNENPADMLTK 1309
Score = 63.5 bits (153), Expect = 4e-09
Identities = 101/466 (21%), Positives = 186/466 (39%), Gaps = 70/466 (15%)
Query: 74 GDN-YGSWSRAVTMAL--RAKNKFGFVDGSLTIPKKKEDILTWQRCNDLVASWILNSVST 130
GDN + +W R + L + +K VD K ED W ++ AS I +S
Sbjct: 13 GDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAED---WADLDERAASAIRLHLSD 69
Query: 131 EIRPSILYAETAEQIWSDLQDRF-SQSNAPKIYQLKQSISALKQEGMYVSLYFTQLKSLW 189
++ +I+ +TA IW+ L+ + S++ K+Y KQ LY +
Sbjct: 70 DVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ-------------LYALHMSEGT 116
Query: 190 DELNSIALVNPCICGNAKSILDQQNQDRAMEFLQGVHDRFSAVRSQILLMDPFPSIQRIY 249
+ L+ + + N I A + + +D+A+ L + + + + IL ++ +
Sbjct: 117 NFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVT 176
Query: 250 NIVRQEEKQQEINFRPVPAV----ESAALQTSKAPYRTPGKRQRP---------FCEHCN 296
+ + EK ++ A+ + Q S Y G R + C +CN
Sbjct: 177 SALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCN 236
Query: 297 RHGHTITTCYQIHGFPSNPSKPQKKTETSPSTSANQLSSAQYHKLLTLLAKEDNVGSSVN 356
+ GH C NP K + +T + N + Q + + L E+ ++
Sbjct: 237 QPGHFKRDC-------PNPRKGKGET-SGQKNDDNTAAMVQNNDNVVLFINEEE--ECMH 286
Query: 357 LAGTAFTCIPFSWIIDSGASNHICTSLSLFSSYYPVNNQISVQQPDGSQALVKHIGTI-- 414
L+G W++D+ AS+H LF Y + +V+ + S + + IG I
Sbjct: 287 LSGP-----ESEWVVDTAASHHATPVRDLFCRYV-AGDFGTVKMGNTSYSKIAGIGDICI 340
Query: 415 --NCSPSLILTNVYHVPTFKFNLMSVTQLTESLNCDAIFSSSGCVFQDQATKKMIGRGSA 472
N +L+L +V HVP + NL+S L ++ F++ ++ +I +G A
Sbjct: 341 KTNVGCTLVLKDVRHVPDLRMNLISGIALDRD-GYESYFANQ--KWRLTKGSLVIAKGVA 397
Query: 473 RNELYYLNQDLVSNKHDKDHYCLSHPLSSLFSSKHCNKFDLWHLRL 518
R LY N ++ + L +++ DLWH R+
Sbjct: 398 RGTLYRTNAEICQGE--------------LNAAQDEISVDLWHKRM 429
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 414 bits (1064), Expect = e-115
Identities = 277/806 (34%), Positives = 410/806 (50%), Gaps = 69/806 (8%)
Query: 554 FGGECVLTAAYLINKLPTPIL--KFKSPHQVLLGSPPSYSSLRVFGCLCFAKNMNIQHKF 611
F GE VLTA YLIN++P+ L K+P+++ P LRVFG + N Q KF
Sbjct: 609 FWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKF 668
Query: 612 DERSKPGIFVGYPFNQKGYRIYDMKTRQIYVSRDVQFHET------------VFPYQDIQ 659
D++S IFVGY N G++++D + V+RDV ET VF +D +
Sbjct: 669 DDKSFKSIFVGYEPN--GFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVF-LKDSK 725
Query: 660 SPPFNNAISINTQILDNEFDDLFTGSPTHPNIP-------PENSHNDNSNDTIVTISTPE 712
N + + +I+ EF + S NI EN + N + I+ P
Sbjct: 726 ESENKNFPNDSRKIIQTEFPN---ESKECDNIQFLKDSKESENKNFPNDSRKIIQTEFPN 782
Query: 713 DDASSNPPSFSAESLSNNP----PSTEMNPPNHRHSQRIRNPPI---------HLKDYIC 759
+ + F +S +N S + +H + + P HLK+
Sbjct: 783 ESKECDNIQFLKDSKESNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEI-- 840
Query: 760 KINNVTSKINFPLEN----------YLSLSNLSNSHRAFLINI--IENKEPKSYSQAM-- 805
I+N T + N +S + NS ++N I N P S+ +
Sbjct: 841 GIDNPTKNDGIEIINRRSERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYR 900
Query: 806 -KSVEWRDAMAKEIQALESNNTWILCPLPEGKSAIGCKWIYKIKYHSDGSIDRYKARLVA 864
W +A+ E+ A + NNTW + PE K+ + +W++ +KY+ G+ RYKARLVA
Sbjct: 901 DDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVA 960
Query: 865 KGYSQVQGIDYHDTFAPVAKLVTVRLLLSIAAIKNWPLYQFDVNNAFLQGDLSEEVYMKL 924
+G++Q IDY +TFAPVA++ + R +LS+ N ++Q DV AFL G L EE+YM+L
Sbjct: 961 RGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRL 1020
Query: 925 PPGFSHKKKPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKGFRQSISD---YSLFTYNCD 981
P G S VCKLNK+IYGLKQA+R WF F L + F S D Y L N +
Sbjct: 1021 PQGISCNSDN-VCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNIN 1079
Query: 982 QTTIFVLVYVDDIIITGNNENAISKIKKFLAQSFSIKDLGNLSYILGIEVSRSKKGIFLC 1041
+ I+VL+YVDD++I + ++ K++L + F + DL + + +GI + + I+L
Sbjct: 1080 E-NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLS 1138
Query: 1042 QRKYTLDILSDSGMTGCRPSDFPMEQHLRLR-PNDGTPLSDPTVYRRHVGRLLYLTV-TR 1099
Q Y ILS M C P+ + N + P R +G L+Y+ + TR
Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC--RSLIGCLMYIMLCTR 1196
Query: 1100 PDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGKGLFLSASSSI--NLVGYADSDW 1157
PD+ AVN LS++ S + +VLRYLKG++ L + + ++GY DSDW
Sbjct: 1197 PDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDW 1256
Query: 1158 AGCPTTRRSTTGY-FTMLGSNPISWKTKKQPTISRSSAEAEYRSLATLSSELQWLKYLLS 1216
AG R+STTGY F M N I W TK+Q +++ SS EAEY +L E WLK+LL+
Sbjct: 1257 AGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLT 1316
Query: 1217 DLGIDHPQPITIYCDSQAAIHIAENPVFHERTKHIEIDCHFVREKIKSGLIAPSYIRSSD 1276
+ I PI IY D+Q I IA NP H+R KHI+I HF RE++++ +I YI + +
Sbjct: 1317 SINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTEN 1376
Query: 1277 QLADIFTKPLGGDAYKRILGKLGVIE 1302
QLADIFTKPL + + KLG+++
Sbjct: 1377 QLADIFTKPLPAARFVELRDKLGLLQ 1402
Score = 54.3 bits (129), Expect = 2e-06
Identities = 100/482 (20%), Positives = 178/482 (36%), Gaps = 77/482 (15%)
Query: 74 GDNYGSWSRAVTMALRAKNKFGFVDGSLTIPKKKEDILTWQRCNDLVASWILNSVSTEIR 133
G+ Y W + L ++ VDG + P + +D +W++ S I+ +S
Sbjct: 13 GEKYAIWKFRIRALLAEQDVLKVVDGLM--PNEVDD--SWKKAERCAKSTIIEYLSD--- 65
Query: 134 PSILYAETAEQIWSDLQDRFSQSNAPKIYQLKQSISALKQEGMYVSLYFTQLKSLWDELN 193
S L T SD+ R N +Y+ K S L +SL + SL +
Sbjct: 66 -SFLNFAT-----SDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFH 119
Query: 194 SI-ALVNPCICGNAKSILDQQNQDRAMEFLQGVHDRFSAVRSQI-LLMDPFPSIQRIYN- 250
L++ + AK + D+ L + + + + I L + ++ + N
Sbjct: 120 IFDELISELLAAGAKI----EEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNR 175
Query: 251 IVRQEEKQQEINFRPVPAVESAALQTSKAPYRT---------PGK------RQRPFCEHC 295
++ QE K + + V +A + + Y+ P K + + C HC
Sbjct: 176 LLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHC 235
Query: 296 NRHGHTITTCYQIHGFPSNPSKPQKKTETSPSTSANQLSSAQYHKLLTLLAKEDNVGSSV 355
R GH C+ +N +K +K Q+ +A H + + KE N S +
Sbjct: 236 GREGHIKKDCFHYKRILNNKNKENEK----------QVQTATSHGI-AFMVKEVNNTSVM 284
Query: 356 NLAGTAFTCIPFSWIIDSGASNHICTSLSLFSSYYPVNNQISV---QQPDGSQALVKHIG 412
+ G +++DSGAS+H+ SL++ V + + +Q + A + I
Sbjct: 285 DNCG---------FVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIV 335
Query: 413 TINCSPSLILTNVYHVPTFKFNLMSVTQLTESLNCDAIFSSSGCVFQDQATKKMIGRGSA 472
+ + L +V NLMSV +L E+ F SG + G
Sbjct: 336 RLRNDHEITLEDVLFCKEAAGNLMSVKRLQEA-GMSIEFDKSGVTISKNGLMVVKNSGML 394
Query: 473 RNELYYLNQDLVSNKHDKDHYCLSHPLSSLFSSKHCNKFDLWHLRLVALQLRNKMELWNE 532
N + +N S ++KH N F LWH R + +E+ +
Sbjct: 395 NN-VPVINFQAYS-----------------INAKHKNNFRLWHERFGHISDGKLLEIKRK 436
Query: 533 NI 534
N+
Sbjct: 437 NM 438
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 214 bits (546), Expect = 9e-55
Identities = 106/227 (46%), Positives = 153/227 (66%), Gaps = 3/227 (1%)
Query: 985 IFVLVYVDDIIITGNNENAISKIKKFLAQSFSIKDLGNLSYILGIEVSRSKKGIFLCQRK 1044
+++L+YVDDI++TG++ ++ + L+ +FS+KDLG + Y LGI++ G+FL Q K
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60
Query: 1045 YTLDILSDSGMTGCRPSDFPMEQHLRLRPNDGTP-LSDPTVYRRHVGRLLYLTVTRPDIQ 1103
Y IL+++GM C+P P+ L+L + T DP+ +R VG L YLT+TRPDI
Sbjct: 61 YAEQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDIS 118
Query: 1104 YAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGKGLFLSASSSINLVGYADSDWAGCPTT 1163
YAVN + Q M P + FD +VLRY+KG++ GL++ +S +N+ + DSDWAGC +T
Sbjct: 119 YAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTST 178
Query: 1164 RRSTTGYFTMLGSNPISWKTKKQPTISRSSAEAEYRSLATLSSELQW 1210
RRSTTG+ T LG N ISW K+QPT+SRSS E EYR+LA ++EL W
Sbjct: 179 RRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 158 bits (399), Expect = 1e-37
Identities = 98/297 (32%), Positives = 156/297 (51%), Gaps = 4/297 (1%)
Query: 906 DVNNAFLQGDLSEEVYMKLPPGFSHKKKP-CVCKLNKSIYGLKQASRQWFSKFSTTLIQK 964
DV+ AFL + E +Y+K PPGF +++ P V +L +YGLKQA W + TL +
Sbjct: 2 DVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKI 61
Query: 965 GFRQSISDYSLFTYNCDQTTIFVLVYVDDIIITGNNENAISKIKKFLAQSFSIKDLGNLS 1024
GF + ++ L+ + I++ VYVDD+++ + ++K+ L + +S+KDLG +
Sbjct: 62 GFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVD 121
Query: 1025 YILGIEVSRSKKG-IFLCQRKYTLDILSDSGMTGCRPSDFPMEQHLRLRPNDGTPLSDPT 1083
LG+ + +S G I L + Y S+S + + + P+ L L D T
Sbjct: 122 KFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDIT 181
Query: 1084 VYRRHVGRLLYLTVT-RPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGKGLFLS 1142
Y+ VG+LL+ T RPDI Y V+ LS+F++ P + H ++A +VLRYL + L
Sbjct: 182 PYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYR 241
Query: 1143 ASSSINLVGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKK-QPTISRSSAEAEY 1198
+ S + L Y D+ ST GY T+L P++W +KK + I S EAEY
Sbjct: 242 SGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEY 298
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 127 bits (320), Expect = 2e-28
Identities = 117/461 (25%), Positives = 202/461 (43%), Gaps = 35/461 (7%)
Query: 858 YKARLVAKGYSQVQGIDYHDTFAPVAKLVT----VRLLLSIAAIKNWPLYQFDVNNAFLQ 913
YKAR+V +G +Q DT++ + +++ L IA +N + D+N+AFL
Sbjct: 1337 YKARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLY 1391
Query: 914 GDLSEEVYMKLPPGFSHKKKPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKGFRQSISDY 973
L EE+Y+ P H ++ CV KLNK++YGLKQ+ ++W L G + + Y
Sbjct: 1392 AKLEEEIYIPHP----HDRR-CVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDN--SY 1444
Query: 974 SLFTYNCDQTTIFVLVYVDDIIITGNNENAISKIKKFLAQSFSIKDLGNL------SYIL 1027
+ Y + + + VYVDD +I +NE + + L +F +K G L + IL
Sbjct: 1445 TPGLYQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDIL 1504
Query: 1028 GIEVSRSKK--GIFLCQRKYT--LDILSDSGMTGCRPSDFPMEQHLRLRPNDGTPLSDPT 1083
G+++ +K+ I L + + +D + + R S P ++ P
Sbjct: 1505 GMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEE 1564
Query: 1084 VYRRHV-------GRLLYLT-VTRPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSV 1135
+R+ V G L Y+ R DI++AV +++ + P+ F ++++YL
Sbjct: 1565 EFRQGVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYK 1624
Query: 1136 GKGLFLSASSSINLVGYADSDWA-GCPTTRRSTTGYFTMLGSNPISWKTKKQPTISRSSA 1194
G+ + + A +D + G +S G G N + + K SS
Sbjct: 1625 DIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSST 1684
Query: 1195 EAEYRSLATLSSELQWLKYLLSDLGIDHPQPITIYCDSQAAIHIAENPVFHERTKHIEID 1254
EAE ++ ++ + LK L +LG I + DS+ AI + K I
Sbjct: 1685 EAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIK 1744
Query: 1255 CHFVREKIKSGLIAPSYIRSSDQLADIFTKPLGGDAYKRIL 1295
++EKIK I I +AD+ TKP+ +KR +
Sbjct: 1745 TEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRFI 1785
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 123 bits (309), Expect = 3e-27
Identities = 173/702 (24%), Positives = 296/702 (41%), Gaps = 104/702 (14%)
Query: 672 QILDNEFDD-LFTGSPTHPNIPPENSHNDNSNDTIVTISTPEDDASSNP----------P 720
QI D E + + SP+ PPEN NS+ IV I TP + N P
Sbjct: 1079 QISDQETEKRIIHRSPSIDASPPEN----NSSHNIVPIKTPTTVSEQNTEESIIADLPLP 1134
Query: 721 SFSAESLSNNP-PSTEMNPPNHRHSQR-------------IRNPPIHLKDYICKINNVTS 766
ES + P P E+ P N R + I + L+D +I S
Sbjct: 1135 DLPPESPTEFPDPFKELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIK--VS 1192
Query: 767 KINFPLENYLSLSNLSNSHRAFLINIIEN-------------KEPKSYSQAMKSVE-WRD 812
+ + +N SL + R LI ++ E +Y++ +K E + +
Sbjct: 1193 RDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIE 1252
Query: 813 AMAKEIQALESNNTWILCPLPEGKS-----AIGCKWIYKIKYHSDGSIDRYKARLVAKGY 867
A KE+ L TW + K I +I+ K DG+ +KAR VA+G
Sbjct: 1253 AYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKK--RDGT---HKARFVARG- 1306
Query: 868 SQVQGIDYHDTFAPVAKLVTVR-----LLLSIAAIKNWPLYQFDVNNAFLQGDLSEEVYM 922
I + DT+ + TV LS+A N+ + Q D+++A+L D+ EE+Y+
Sbjct: 1307 ----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYI 1362
Query: 923 KLPPGFSHKKKPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKGFRQSISDYSLFTYNCDQ 982
+ PP K + +L KS+YGLKQ+ W+ + LIQ+ + + +S N
Sbjct: 1363 RPPPHLGMNDK--LIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWSCVFKNSQV 1420
Query: 983 TTIFVLVYVDDIIITGNNENAISKIKKFLAQSFSIK--DLG----NLSY-ILGIEVSRSK 1035
T + ++VDD+++ N N+ +I + L + K +LG + Y ILG+E+ + +
Sbjct: 1421 T---ICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGLEI-KYQ 1476
Query: 1036 KGIF--------LCQRKYTLDI-LSDSGMTGCRPSD---FPMEQHLRLRPNDGTPLSDPT 1083
+G + L ++ L++ L+ G P + +Q L L +D
Sbjct: 1477 RGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYK--MKVH 1534
Query: 1084 VYRRHVGRLLYLTVT-RPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGKGLFLS 1142
++ +G Y+ R D+ Y +NTL+Q + P D ++++++ + K L
Sbjct: 1535 EMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWH 1594
Query: 1143 ASSSI----NLVGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKKQPTISRSSAEAEY 1198
S + LV +D+ + P +S G +L I K+ K S+ EAE
Sbjct: 1595 KSKPVKPTNKLVVISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEI 1653
Query: 1199 RSLATLSSELQWLKYLLSDLGIDHPQPIT--IYCDSQAAIH-IAENPVFHERTKHIEIDC 1255
+++ L L YL+ +L +PIT + DS++ I I N R +
Sbjct: 1654 HAISESVPLLNNLSYLIQEL---DKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKA 1710
Query: 1256 HFVREKIKSGLIAPSYIRSSDQLADIFTKPLGGDAYKRILGK 1297
+R+++ + YI + +AD+ TKPL +K + K
Sbjct: 1711 MRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1752
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 123 bits (308), Expect = 4e-27
Identities = 174/702 (24%), Positives = 297/702 (41%), Gaps = 104/702 (14%)
Query: 672 QILDNEFDD-LFTGSPTHPNIPPENSHNDNSNDTIVTISTPEDDASSNP----------P 720
QI D E + + SP+ PPEN NS+ IV I TP + N P
Sbjct: 652 QISDQETEKRIIHRSPSIDASPPEN----NSSHNIVPIKTPTTVSEQNTEESIIADLPLP 707
Query: 721 SFSAESLSNNP-PSTEMNPPNHRHSQR-------------IRNPPIHLKDYICKINNVTS 766
ES + P P E+ P N R + I + L+D +I S
Sbjct: 708 DLPPESPTEFPDPFKELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIK--VS 765
Query: 767 KINFPLENYLSLSNLSNSHRAFLINIIEN-------------KEPKSYSQAMKSVE-WRD 812
+ + +N SL + R LI ++ E +Y++ +K E +
Sbjct: 766 RDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIQ 825
Query: 813 AMAKEIQALESNNTWILCPLPEGKS-----AIGCKWIYKIKYHSDGSIDRYKARLVAKGY 867
A KE+ L TW + K I +I+ K DG+ +KAR VA+G
Sbjct: 826 AYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRK--RDGT---HKARFVARG- 879
Query: 868 SQVQGIDYHDTFAPVAKLVTVR-----LLLSIAAIKNWPLYQFDVNNAFLQGDLSEEVYM 922
I + DT+ P + TV LS+A N+ + Q D+++A+L D+ EE+Y+
Sbjct: 880 ----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYI 935
Query: 923 KLPPGFSHKKKPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKGFRQSISDYSLFTYNCDQ 982
+ PP K + +L KS+YGLKQ+ W+ + LI++ + + +S N
Sbjct: 936 RPPPHLGMNDK--LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNSQV 993
Query: 983 TTIFVLVYVDDIIITGNNENAISKIKKFLAQSFSIK--DLG----NLSY-ILGIEVSRSK 1035
T + ++VDD+I+ + NA KI L + + K +LG + Y ILG+E+ + +
Sbjct: 994 T---ICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEI-KYQ 1049
Query: 1036 KGIF--------LCQRKYTLDI-LSDSGMTGCRPSD---FPMEQHLRLRPNDGTPLSDPT 1083
+G + L ++ L++ L+ G P + +Q L L +D
Sbjct: 1050 RGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYK--MKVH 1107
Query: 1084 VYRRHVGRLLYLTVT-RPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGKGLFLS 1142
++ +G Y+ R D+ Y +NTL+Q + P D ++++++ + K L
Sbjct: 1108 EMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWH 1167
Query: 1143 ASSSI----NLVGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKKQPTISRSSAEAEY 1198
S + LV +D+ + P +S G +L I K+ K S+ EAE
Sbjct: 1168 KSKPVKPTNKLVVISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEI 1226
Query: 1199 RSLATLSSELQWLKYLLSDLGIDHPQPIT--IYCDSQAAIH-IAENPVFHERTKHIEIDC 1255
+++ L L +L+ +L + +PIT + DS++ I I N R +
Sbjct: 1227 HAISESVPLLNNLSHLVQEL---NKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKA 1283
Query: 1256 HFVREKIKSGLIAPSYIRSSDQLADIFTKPLGGDAYKRILGK 1297
+R+++ + YI + +AD+ TKPL +K + K
Sbjct: 1284 MRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 119 bits (299), Expect = 4e-26
Identities = 171/707 (24%), Positives = 288/707 (40%), Gaps = 114/707 (16%)
Query: 672 QILDNEFDD-LFTGSPTHPNIPPENSHNDNSNDTIVTISTPEDDASSNP----------P 720
QI D E + + SP+ PPEN NS+ IV I TP + N P
Sbjct: 652 QISDQETEKRIIHRSPSIDASPPEN----NSSHNIVPIKTPTTVSEQNTEESIIADLPLP 707
Query: 721 SFSAESLSNNPPSTEMNPPNHRHSQR--------------IRNPPIHLKDYICKINNVTS 766
ES + P + PP + H I + L+D +I S
Sbjct: 708 DLPPESPTEFPDPFKELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIK--VS 765
Query: 767 KINFPLENYLSLSNLSNSHRAFLINIIEN-------------KEPKSYSQAMKSVE-WRD 812
+ + +N SL + R LI ++ E +Y++ +K E + +
Sbjct: 766 RDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIE 825
Query: 813 AMAKEIQALESNNTWILCPLPEGKS-----AIGCKWIYKIKYHSDGSIDRYKARLVAKGY 867
A KE+ L NTW + K I +I+ K DG+ +KAR VA+G
Sbjct: 826 AYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRK--RDGT---HKARFVARG- 879
Query: 868 SQVQGIDYHDTFAPVAKLVTVR-----LLLSIAAIKNWPLYQFDVNNAFLQGDLSEEVYM 922
I + DT+ + TV LS+A N+ + Q D+++A+L D+ EE+Y+
Sbjct: 880 ----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYI 935
Query: 923 KLPPGFSHKKKPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKGFRQSISDYSLFTYNCDQ 982
+ PP K + +L KS+YGLKQ+ W+ + LI++ + + +S N
Sbjct: 936 RPPPHLGMNDK--LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNSQV 993
Query: 983 TTIFVLVYVDDIIITGNNENAISKIKKFLAQSFSIK--DLG----NLSY-ILGIEVSRSK 1035
T + ++VDD+I+ + NA KI L + + K +LG + Y ILG+E+
Sbjct: 994 T---ICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK--- 1047
Query: 1036 KGIFLCQRKYTLDILSDSGMTGCRPS-DFPMEQHLRLRPNDGTP---------LSDPTVY 1085
QR + + ++ +T P + P+ R G P D Y
Sbjct: 1048 -----YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEY 1102
Query: 1086 RRHVGRLLYLT--------VTRPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGK 1137
+ V + L R D+ Y +NTL+Q + P D ++++++ + K
Sbjct: 1103 KEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDK 1162
Query: 1138 GLFLSASSSI----NLVGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKKQPTISRSS 1193
L + LV +D+ + P +S G +L I K+ K S+
Sbjct: 1163 QLIWHKNKPTEPDNKLVAISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTST 1221
Query: 1194 AEAEYRSLATLSSELQWLKYLLSDLGIDHPQPIT--IYCDSQAAIH-IAENPVFHERTKH 1250
EAE +++ L L +L+ +L + +PIT + DS++ I I N R +
Sbjct: 1222 TEAEIHAISESVPLLNNLSHLVQEL---NKKPITKGLLTDSKSTISIIISNNEEKFRNRF 1278
Query: 1251 IEIDCHFVREKIKSGLIAPSYIRSSDQLADIFTKPLGGDAYKRILGK 1297
+R+++ + YI + +AD+ TKPL +K + K
Sbjct: 1279 FGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 117 bits (293), Expect = 2e-25
Identities = 169/707 (23%), Positives = 288/707 (39%), Gaps = 114/707 (16%)
Query: 672 QILDNEFDD-LFTGSPTHPNIPPENSHNDNSNDTIVTISTPEDDASSNP----------P 720
QI D E + + SP+ PPEN NS+ IV I TP + N P
Sbjct: 652 QISDQETEKRIIHRSPSIDASPPEN----NSSHNIVPIKTPTTVSEQNTEESIIADLPLP 707
Query: 721 SFSAESLSNNPPSTEMNPPNHRHSQR--------------IRNPPIHLKDYICKINNVTS 766
ES + P + PP + H I + L+D +I S
Sbjct: 708 DLPPESPTEFPDPFKELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIK--VS 765
Query: 767 KINFPLENYLSLSNLSNSHRAFLINIIEN-------------KEPKSYSQAMKSVE-WRD 812
+ + +N SL + R LI ++ E +Y++ +K E + +
Sbjct: 766 RDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIE 825
Query: 813 AMAKEIQALESNNTWILCPLPEGKS-----AIGCKWIYKIKYHSDGSIDRYKARLVAKGY 867
A KE+ L TW + K I +I+ K DG+ +KAR VA+G
Sbjct: 826 AYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKK--RDGT---HKARFVARG- 879
Query: 868 SQVQGIDYHDTFAPVAKLVTVR-----LLLSIAAIKNWPLYQFDVNNAFLQGDLSEEVYM 922
I + DT+ + TV LS+A N+ + Q D+++A+L D+ EE+Y+
Sbjct: 880 ----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYI 935
Query: 923 KLPPGFSHKKKPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKGFRQSISDYSLFTYNCDQ 982
+ PP K + +L KS+YGLKQ+ W+ + LI++ + + +S N
Sbjct: 936 RPPPHLGMNDK--LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNSQV 993
Query: 983 TTIFVLVYVDDIIITGNNENAISKIKKFLAQSFSIK--DLG----NLSY-ILGIEVSRSK 1035
T + ++VDD+I+ + NA KI L + + K +LG + Y ILG+E+
Sbjct: 994 T---ICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK--- 1047
Query: 1036 KGIFLCQRKYTLDILSDSGMTGCRPS-DFPMEQHLRLRPNDGTP---------LSDPTVY 1085
QR + + ++ +T P + P+ R G P D Y
Sbjct: 1048 -----YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEY 1102
Query: 1086 RRHVGRLLYLT--------VTRPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGK 1137
+ V + L R D+ Y +NTL+Q + P D ++++++ + K
Sbjct: 1103 KEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDK 1162
Query: 1138 GLFLSASSSI----NLVGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKKQPTISRSS 1193
L + LV +D+ + P +S G +L I K+ K S+
Sbjct: 1163 QLIWHKNKPTEPDNKLVAISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTST 1221
Query: 1194 AEAEYRSLATLSSELQWLKYLLSDLGIDHPQPIT--IYCDSQAAIHIAENPVFHE-RTKH 1250
EAE +++ L L YL+ +L + +PI + DS++ I I ++ + R +
Sbjct: 1222 TEAEIHAISESVPLLNNLSYLIQEL---NKKPIIKGLLTDSRSTISIIKSTNEEKFRNRF 1278
Query: 1251 IEIDCHFVREKIKSGLIAPSYIRSSDQLADIFTKPLGGDAYKRILGK 1297
+R+++ + YI + +AD+ TKPL +K + K
Sbjct: 1279 FGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1325
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 117 bits (292), Expect = 3e-25
Identities = 169/704 (24%), Positives = 288/704 (40%), Gaps = 108/704 (15%)
Query: 672 QILDNEFDD-LFTGSPTHPNIPPENSHNDNSNDTIVTISTPEDDASSNP----------P 720
QI D E + + SP+ PPEN NS+ IV I TP + N P
Sbjct: 1079 QISDQETEKRIIHRSPSIDASPPEN----NSSHNIVPIKTPTTVSEQNTEESIIADLPLP 1134
Query: 721 SFSAESLSNNPPSTEMNPPNHRHSQR--------------IRNPPIHLKDYICKINNVTS 766
ES + P + PP + H I + L+D +I S
Sbjct: 1135 DLPPESPTEFPDPFKELPPINSHQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIK--VS 1192
Query: 767 KINFPLENYLSLSNLSNSHRAFLINIIEN-------------KEPKSYSQAMKSVE-WRD 812
+ + +N SL + R LI ++ E +Y++ +K E + +
Sbjct: 1193 RDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIE 1252
Query: 813 AMAKEIQALESNNTWILCPLPEGKS-----AIGCKWIYKIKYHSDGSIDRYKARLVAKGY 867
A KE+ L TW + K I +I+ K DG+ +KAR VA+G
Sbjct: 1253 AYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKK--RDGT---HKARFVARG- 1306
Query: 868 SQVQGIDYHDTFAPVAKLVTVRLL--LSIAAIKNWPLYQFDVNNAFLQGDLSEEVYMKLP 925
+Q D +DT + L+ LS+A N+ + Q D+++A+L D+ EE+Y++ P
Sbjct: 1307 -DIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPP 1365
Query: 926 PGFSHKKKPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKGFRQSISDYSLFTYNCDQTTI 985
P K + +L KS YGLKQ+ W+ + LI++ + + +S N T
Sbjct: 1366 PHLGMNDK--LIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNSQVT-- 1421
Query: 986 FVLVYVDDIIITGNNENAISKIKKFLAQSFSIK--DLG----NLSY-ILGIEVSRSKKGI 1038
+ ++VDD+I+ + NA KI L + + K +LG + Y ILG+E+
Sbjct: 1422 -ICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK------ 1474
Query: 1039 FLCQRKYTLDILSDSGMTGCRPS-DFPMEQHLRLRPNDGTP---------LSDPTVYRRH 1088
QR + + ++ +T P + P+ R G P D Y+
Sbjct: 1475 --YQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEK 1532
Query: 1089 VGRLLYLT--------VTRPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGKGLF 1140
V + L R D+ Y +NTL+Q + P D ++++++ + K L
Sbjct: 1533 VHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLI 1592
Query: 1141 LSASSSI----NLVGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKKQPTISRSSAEA 1196
+ LV +D+ + P +S G +L I K+ K S+ EA
Sbjct: 1593 WHKNKPTEPDNKLVAISDASYGNQP-YYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEA 1651
Query: 1197 EYRSLATLSSELQWLKYLLSDLGIDHPQPIT--IYCDSQAAIHIAENPVFHE-RTKHIEI 1253
E +++ L L YL+ +L + +PI + DS++ I I ++ + R +
Sbjct: 1652 EIHAISESVPLLNNLSYLIQEL---NKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGT 1708
Query: 1254 DCHFVREKIKSGLIAPSYIRSSDQLADIFTKPLGGDAYKRILGK 1297
+R+++ + YI + +AD+ TKPL +K + K
Sbjct: 1709 KAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1752
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 114 bits (285), Expect = 2e-24
Identities = 155/655 (23%), Positives = 279/655 (41%), Gaps = 79/655 (12%)
Query: 699 DNSNDTIVTISTPEDDASSNPPSFSAESLSNNPP--STEMNPPNHRHSQRIRNPPIHLKD 756
+N+ ++I+ P D PP+ ++S PP S + N I+ K
Sbjct: 694 ENTEESIIA-DLPLPDLPPEPPTELSDSFKELPPINSRQTNSSLGGIGDSNAYTTINSKK 752
Query: 757 YICKINNVTSKIN---FPLENYLSLSNLSNSHRAFLINIIEN-------------KEPKS 800
+ N K++ + +N SL + R LI ++ E +
Sbjct: 753 RSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAIT 812
Query: 801 YSQAMKSVE-WRDAMAKEIQALESNNTWILCPLPEGKS-----AIGCKWIYKIKYHSDGS 854
Y++ +K E + +A KE+ L TW + K I +I+ K DG+
Sbjct: 813 YNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDPKRVINSMFIFNRK--RDGT 870
Query: 855 IDRYKARLVAKGYSQVQGIDYHDTFAPVAKLVTVR-----LLLSIAAIKNWPLYQFDVNN 909
+KAR VA+G I + DT+ + TV LS+A N+ + Q D+++
Sbjct: 871 ---HKARFVARG-----DIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISS 922
Query: 910 AFLQGDLSEEVYMKLPPGFSHKKKPCVCKLNKSIYGLKQASRQWFSKFSTTLIQKGFRQS 969
A+L D+ EE+Y++ PP K + +L KS+YGLKQ+ W+ + LI++ +
Sbjct: 923 AYLYADIKEELYIRPPPHLGMNDK--LIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEE 980
Query: 970 ISDYSLFTYNCDQTTIFVLVYVDDIIITGNNENAISKIKKFLAQSFSIK--DLG----NL 1023
+ +S N T + ++VDD+++ N N+ +I L + K +LG +
Sbjct: 981 VRGWSCVFENSQVT---ICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEI 1037
Query: 1024 SY-ILGIEVSRSKKGIF--------LCQRKYTLDI-LSDSGMTGCRPSD---FPMEQHLR 1070
Y ILG+E+ + ++G + L ++ L++ L+ G P + +Q L
Sbjct: 1038 QYDILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELE 1096
Query: 1071 LRPNDGTPLSDPTVYRRHVGRLLYLTVT-RPDIQYAVNTLSQFMQSPYSSHFDAATQVLR 1129
L +D ++ +G Y+ R D+ Y +NTL+Q + P D ++++
Sbjct: 1097 LEEDDYK--MKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQ 1154
Query: 1130 YLKGSVGKGLFLSASSSI----NLVGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKK 1185
++ + K L S + LV +D+ + P +S G +L I K+ K
Sbjct: 1155 FIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTK 1213
Query: 1186 QPTISRSSAEAEYRSLATLSSELQWLKYLLSDLGIDHPQPIT--IYCDSQAAIH-IAENP 1242
S+ EAE +++ L L YL+ +L +PIT + DS++ I I N
Sbjct: 1214 ASLTCTSTTEAEIHAISESVPLLNNLSYLIQEL---DKKPITKGLLTDSKSTISIIISNN 1270
Query: 1243 VFHERTKHIEIDCHFVREKIKSGLIAPSYIRSSDQLADIFTKPLGGDAYKRILGK 1297
R + +R+++ + YI + +AD+ TKPL +K + K
Sbjct: 1271 EEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 114 bits (284), Expect = 2e-24
Identities = 53/116 (45%), Positives = 75/116 (63%)
Query: 780 NLSNSHRAFLINIIENKEPKSYSQAMKSVEWRDAMAKEIQALESNNTWILCPLPEGKSAI 839
N N + I KEPKS A+K W AM +E+ AL N TWIL P P ++ +
Sbjct: 10 NKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNIL 69
Query: 840 GCKWIYKIKYHSDGSIDRYKARLVAKGYSQVQGIDYHDTFAPVAKLVTVRLLLSIA 895
GCKW++K K HSDG++DR KARLVAKG+ Q +GI + +T++PV + T+R +L++A
Sbjct: 70 GCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 108 bits (271), Expect = 7e-23
Identities = 160/691 (23%), Positives = 283/691 (40%), Gaps = 85/691 (12%)
Query: 666 AISINTQILDNEFDDLFTGSPTHPNIPPENSHNDNSNDTIV--------TISTPEDDASS 717
A+ NT +D + + + PNI P+ S + + D+I+ T +P D +
Sbjct: 1103 AVCDNTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILDDLPLPDLTHQSPTDTSDV 1162
Query: 718 NPPSFSAESLSNNPPSTEMNPPNHRHSQRIRNPPIHLKDYICKINNVTSKINFPLENYLS 777
+ S N M+ N + + + L+D +I S+ + +N S
Sbjct: 1163 SKDIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRS--LEDNETEIE--VSRDTWNNKNMRS 1218
Query: 778 LSNLSNSHRAFLINIIEN-------------KEPKSYSQAMKSVE-WRDAMAKEIQALES 823
L + R LI I+ E +Y++ K + + +A KEI L
Sbjct: 1219 LEPPRSKKRINLIAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQLLK 1278
Query: 824 NNTWILCPLPEG-----KSAIGCKWIYKIKYHSDGSIDRYKARLVAKGYSQVQGIDYHDT 878
NTW + K I +I+ K DG+ +KAR VA+G Q D
Sbjct: 1279 MNTWDTNKYYDRNDIDPKKVINSMFIFNKK--RDGT---HKARFVARGDIQHPDTYDSDM 1333
Query: 879 FAPVAKLVTVRLLLSIAAIKNWPLYQFDVNNAFLQGDLSEEVYMKLPPGFSHKKKPCVCK 938
+ + LSIA ++ + Q D+++A+L D+ EE+Y++ PP K + +
Sbjct: 1334 QSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDK--LLR 1391
Query: 939 LNKSIYGLKQASRQWFSKFSTTLIQKGFRQSISDYSLFTYNCDQTTIFVLVYVDDIIITG 998
L KS+YGLKQ+ W+ + LI Q + +S N T + ++VDD+I+
Sbjct: 1392 LRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCVFKNSQVT---ICLFVDDMILFS 1448
Query: 999 NNENAISKIKKFLAQSFSIK--DLG----NLSY-ILGIEVSRSKKGIFLCQRKYTLDILS 1051
+ NA KI L + + K +LG + Y ILG+E+ QR + +
Sbjct: 1449 KDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK--------YQRSKYMKLGM 1500
Query: 1052 DSGMTGCRPS-DFPME---QHLRLRPNDGTPLS------DPTVYRRHVGRLLYLT----- 1096
+ +T P + P+ + LR G + D Y+ V + L
Sbjct: 1501 EKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLASY 1560
Query: 1097 ---VTRPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGKGLFLSASSSI----NL 1149
R D+ Y +NTL+Q + P D ++++++ + K L + L
Sbjct: 1561 VGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKL 1620
Query: 1150 VGYADSDWAGCPTTRRSTTGYFTMLGSNPISWKTKKQPTISRSSAEAEYRSLATLSSELQ 1209
V +D+ + P +S G +L I K+ K S+ EAE +++ L
Sbjct: 1621 VAISDASYGNQP-YYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLN 1679
Query: 1210 WLKYLLSDLGIDHPQPIT--IYCDSQAAIHIAENPVFHE-RTKHIEIDCHFVREKIKSGL 1266
L +L+ +L + +PI + DS++ I I ++ + R + +R+++
Sbjct: 1680 NLSHLVQEL---NKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNN 1736
Query: 1267 IAPSYIRSSDQLADIFTKPLGGDAYKRILGK 1297
+ YI + +AD+ TKPL +K + K
Sbjct: 1737 LYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1767
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 97.4 bits (241), Expect = 2e-19
Identities = 43/82 (52%), Positives = 61/82 (73%)
Query: 1093 LYLTVTRPDIQYAVNTLSQFMQSPYSSHFDAATQVLRYLKGSVGKGLFLSASSSINLVGY 1152
+YLT+TRPD+ +AVN LSQF + ++ A +VL Y+KG+VG+GLF SA+S + L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1153 ADSDWAGCPTTRRSTTGYFTML 1174
ADSDWA CP TRRS TG+ +++
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82
>YBC9_YEAST (P38201) Hypothetical 42.6 kDa protein in AAC2-RPL19B
intergenic region
Length = 376
Score = 44.7 bits (104), Expect = 0.002
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 708 ISTPEDDASSNPPSFSAESLSNNPPSTEMNPPNHRHSQRIRNPPIHLKDYICKINNVTSK 767
ISTP SS PP+ + SLSN+P + + +H + I + D N+ K
Sbjct: 135 ISTPSSLVSSLPPAKFSLSLSNSPSPPPPSSSSLKHGEAIISNTSESSDIFADPNSF-EK 193
Query: 768 INFPLENYLSLSNLSN--SHRAFLINIIE-NKEPKSYSQAMKSVE 809
PL L+L NL+N ++ F IN IE + P S+S + S E
Sbjct: 194 DTMPLTQELTLENLNNQLNYPDFTINAIEQDPAPSSFSSSSSSSE 238
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 42.7 bits (99), Expect = 0.006
Identities = 19/48 (39%), Positives = 28/48 (57%)
Query: 554 FGGECVLTAAYLINKLPTPILKFKSPHQVLLGSPPSYSSLRVFGCLCF 601
F + TA ++INK P+ + F P +V S P+YS LR FGC+ +
Sbjct: 22 FRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVAY 69
>YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein
Length = 146
Score = 40.0 bits (92), Expect = 0.042
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 369 WIIDSGASNHICTSLSLFSSYYPVNNQISVQQPDGSQALVKHIGTINCSPSLILTNVYHV 428
WI D+G ++H+C S+FSS+ + + V+ GS ++ GT+N ++ L +V +V
Sbjct: 79 WIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIPIMGS-GTVNIG-TVQLHDVSYV 136
Query: 429 PTFKFNLMSV 438
P NL+SV
Sbjct: 137 PDLPVNLISV 146
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 38.9 bits (89), Expect = 0.093
Identities = 36/158 (22%), Positives = 69/158 (42%), Gaps = 15/158 (9%)
Query: 150 QDRFSQSNAPKIYQLKQSISALKQEGMYVSLYFTQLKSLWDELNSIALVNPCICGNAKS- 208
QD +N+ L +S++ + + L+ L S DE + L+ K+
Sbjct: 110 QDYLDYTNSISDAVLDSKLSSMTSDEWSIFLFLRGLNSPGDEKAKLYLMQYVEASEKKNE 169
Query: 209 -ILDQQNQDRAMEFLQGVHDRFSAVRSQILLMDPFPSIQRIYNIVRQEEKQQEINFRPVP 267
+ D M+F+Q +H + S+I+ + P S Q++ ++ + + + + +P+P
Sbjct: 170 KLKLSDVHDEWMKFIQ-MHQQ-----SKIVSVKPSKSSQQV-DVNKVDTNRSKKKKKPIP 222
Query: 268 AVESAALQTSKAPYRTPGKRQRPFCEHCNRHGHTITTC 305
+ Q SK K + P C +CN+ GH T C
Sbjct: 223 RKPEKSSQDSKK------KGEIPTCFYCNKKGHYATNC 254
>SGS1_YEAST (P35187) Helicase SGS1 (Helicase TPS1)
Length = 1447
Score = 37.0 bits (84), Expect = 0.35
Identities = 19/64 (29%), Positives = 31/64 (47%), Gaps = 7/64 (10%)
Query: 694 ENSHNDNSNDTIVTISTPEDDASSNPPSFSAESLSNNP-------PSTEMNPPNHRHSQR 746
+NS+ND++ND ++ + EDD +PP E ++P S E + R + R
Sbjct: 312 KNSNNDSNNDDLIQVLDDEDDIDCDPPVILKEGAPHSPAFPHLHMTSEEQDELTRRRNMR 371
Query: 747 IRNP 750
R P
Sbjct: 372 SREP 375
>TAGB_DICDI (P54683) Prestalk-specific protein tagB precursor (EC
3.4.21.-)
Length = 1905
Score = 35.4 bits (80), Expect = 1.0
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 685 SPTHPNIPPENSHNDNSNDTIVTISTPEDDASSNPPSFSAESLSNNPPSTEMNPPNHRHS 744
+P N +N++N+N+N+ + STP +D + PP E ++ PP PP +
Sbjct: 1761 TPLQNNNNNKNNNNNNNNNEPSSSSTPPNDQPTPPPQEQQEQKNDQPPPP---PPQEQQE 1817
Query: 745 QR 746
Q+
Sbjct: 1818 QQ 1819
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,685,006
Number of Sequences: 164201
Number of extensions: 6694620
Number of successful extensions: 17622
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 17431
Number of HSP's gapped (non-prelim): 133
length of query: 1309
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1187
effective length of database: 39,941,532
effective search space: 47410598484
effective search space used: 47410598484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC124966.5