BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124965.10 + phase: 0
(1569 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 486 e-136
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 484 e-135
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 484 e-135
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 362 3e-99
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 360 2e-98
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 353 2e-96
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 306 2e-82
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 278 6e-74
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 278 8e-74
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 207 1e-52
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 207 1e-52
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 206 4e-52
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 206 5e-52
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 202 4e-51
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 194 2e-48
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 186 3e-46
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 160 3e-38
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 152 5e-36
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 149 8e-35
M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860... 145 1e-33
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 486 bits (1251), Expect = e-136
Identities = 300/900 (33%), Positives = 475/900 (52%), Gaps = 49/900 (5%)
Query: 583 EPEMATLLHTYREIF------QIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQ 636
EPE+ + +++I ++PK P + L E+ L + + ++ Y P + +
Sbjct: 371 EPELPDIYKEFKDITAETNTEKLPK---PIKGLEFEVELTQENYRLPIRNYPLPPGKMQA 427
Query: 637 IEKMVQDMLEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDE 696
+ + L+ GII+ S + + P++ V KK+GT R DY+ LN + +P+P +++
Sbjct: 428 MNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQ 487
Query: 697 LLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQR 756
LL ++ G+ FTKLDL+S YH I ++ D K AFR +G +E+LVMP+G+++APA FQ
Sbjct: 488 LLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQY 547
Query: 757 LMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITE 816
+N + V+ + DDIL++S S H+KHV+ V Q L L +KC F ++
Sbjct: 548 FINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQ 607
Query: 817 VEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLT 876
V+++G+ +S G + + VL+W P N K+LR FLG Y R+FI + + PL
Sbjct: 608 VKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLN 667
Query: 877 NLLKKDA-FKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGG 935
NLLKKD +KW + +A + +KQ + + PVL DFS+ +LETDAS VGAVLSQ
Sbjct: 668 NLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKH 727
Query: 936 -----HPIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLG--HKFILRTDQKSLK 988
+P+ Y+S KM+ S +E AI +L +RHYL F + TD ++L
Sbjct: 728 DDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLI 787
Query: 989 SLLDQSLQTPEQQ---AWLHKFIGFDFQIEYKPGKDNQAADALSRVMSLSWSAPE----- 1040
+ + PE + W F+F+I Y+PG N ADALSR++ + P+
Sbjct: 788 GRITNESE-PENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDN 846
Query: 1041 -----------HDFLEQLKKEIGNDSHLQTIVQQCVNNTMDDINYMVKEGLLY-WKHRLV 1088
DF Q+ E ND+ L ++ + + N +K+GLL K +++
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN--EDKRVEENIQLKDGLLINSKDQIL 904
Query: 1089 IPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAK 1148
+P ++ L I+K+YH+ H G+ + +F W +R+ IQ++++ C TCQ K
Sbjct: 905 LPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINK 964
Query: 1149 SVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADY 1208
S N G LQP+P E+ W+ ++MDFIT LP S G+ + VVVDR SK A +P
Sbjct: 965 SRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSI 1024
Query: 1209 SNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQ 1268
+ A F V+ G PK II+D D +FTS+ W+ + S Y PQTDGQ
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQ 1084
Query: 1269 SEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTR 1328
+E N+ +E LRC +P TW ++ V+ YN +H++ M+PF+ ++ P +
Sbjct: 1085 TERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
Query: 1329 YSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDV-SFEVGDQVLVKL 1387
+ SD T+ Q + ++ +KE+L MK D K +++ F+ GD V+VK
Sbjct: 1145 ELPSFSDKTDENSQ--ETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK- 1201
Query: 1388 QPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQLPETAR--IHPVFHVSQLKIFK 1445
R + L K+NKL + GPF V+ K G Y+L LP++ + FHVS L+ ++
Sbjct: 1202 ---RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYR 1258
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 484 bits (1245), Expect = e-135
Identities = 299/900 (33%), Positives = 475/900 (52%), Gaps = 49/900 (5%)
Query: 583 EPEMATLLHTYREIF------QIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQ 636
EPE+ + +++I ++PK P + L E+ L + + ++ Y P + +
Sbjct: 371 EPELPDIYKEFKDITAETNTEKLPK---PIKGLEFEVELTQENYRLPIRNYPLPPGKMQA 427
Query: 637 IEKMVQDMLEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDE 696
+ + L+ GII+ S + + P++ V KK+GT R DY+ LN + +P+P +++
Sbjct: 428 MNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQ 487
Query: 697 LLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQR 756
LL ++ G+ FTKLDL+S YH I ++ D K AFR +G +E+LVMP+G++ APA FQ
Sbjct: 488 LLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQY 547
Query: 757 LMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITE 816
+N + + V+ + D+IL++S S H+KHV+ V Q L L +KC F ++
Sbjct: 548 FINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQ 607
Query: 817 VEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLT 876
V+++G+ +S G + + VL+W P N K+LR FLG Y R+FI + + PL
Sbjct: 608 VKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLN 667
Query: 877 NLLKKDA-FKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGG 935
NLLKKD +KW + +A + +KQ + + PVL DFS+ +LETDAS VGAVLSQ
Sbjct: 668 NLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKH 727
Query: 936 -----HPIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLG--HKFILRTDQKSLK 988
+P+ Y+S KM+ S +E AI +L +RHYL F + TD ++L
Sbjct: 728 DDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLI 787
Query: 989 SLLDQSLQTPEQQ---AWLHKFIGFDFQIEYKPGKDNQAADALSRVMSLSWSAPE----- 1040
+ + PE + W F+F+I Y+PG N ADALSR++ + P+
Sbjct: 788 GRITNESE-PENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDN 846
Query: 1041 -----------HDFLEQLKKEIGNDSHLQTIVQQCVNNTMDDINYMVKEGLLY-WKHRLV 1088
DF Q+ E ND+ L ++ + + N +K+GLL K +++
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN--EDKRVEENIQLKDGLLINSKDQIL 904
Query: 1089 IPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAK 1148
+P ++ L I+K+YH+ H G+ + +F W +R+ IQ++++ C TCQ K
Sbjct: 905 LPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINK 964
Query: 1149 SVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADY 1208
S N G LQP+P E+ W+ ++MDFIT LP S G+ + VVVDR SK A +P
Sbjct: 965 SRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSI 1024
Query: 1209 SNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQ 1268
+ A F V+ G PK II+D D +FTS+ W+ + S Y PQTDGQ
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQ 1084
Query: 1269 SEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTR 1328
+E N+ +E LRC +P TW ++ V+ YN +H++ M+PF+ ++ P +
Sbjct: 1085 TERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
Query: 1329 YSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDV-SFEVGDQVLVKL 1387
+ SD T+ Q + ++ +KE+L MK D K +++ F+ GD V+VK
Sbjct: 1145 ELPSFSDKTDENSQ--ETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK- 1201
Query: 1388 QPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQLPETAR--IHPVFHVSQLKIFK 1445
R + L K+NKL + GPF V+ K G Y+L LP++ + FHVS L+ ++
Sbjct: 1202 ---RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYR 1258
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 484 bits (1245), Expect = e-135
Identities = 299/900 (33%), Positives = 475/900 (52%), Gaps = 49/900 (5%)
Query: 583 EPEMATLLHTYREIF------QIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQ 636
EPE+ + +++I ++PK P + L E+ L + + ++ Y P + +
Sbjct: 371 EPELPDIYKEFKDITAETNTEKLPK---PIKGLEFEVELTQENYRLPIRNYPLPPGKMQA 427
Query: 637 IEKMVQDMLEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDE 696
+ + L+ GII+ S + + P++ V KK+GT R DY+ LN + +P+P +++
Sbjct: 428 MNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQ 487
Query: 697 LLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQR 756
LL ++ G+ FTKLDL+S YH I ++ D K AFR +G +E+LVMP+G++ APA FQ
Sbjct: 488 LLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQY 547
Query: 757 LMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITE 816
+N + + V+ + D+IL++S S H+KHV+ V Q L L +KC F ++
Sbjct: 548 FINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQ 607
Query: 817 VEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLT 876
V+++G+ +S G + + VL+W P N K+LR FLG Y R+FI + + PL
Sbjct: 608 VKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLN 667
Query: 877 NLLKKDA-FKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGG 935
NLLKKD +KW + +A + +KQ + + PVL DFS+ +LETDAS VGAVLSQ
Sbjct: 668 NLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKH 727
Query: 936 -----HPIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLG--HKFILRTDQKSLK 988
+P+ Y+S KM+ S +E AI +L +RHYL F + TD ++L
Sbjct: 728 DDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLI 787
Query: 989 SLLDQSLQTPEQQ---AWLHKFIGFDFQIEYKPGKDNQAADALSRVMSLSWSAPE----- 1040
+ + PE + W F+F+I Y+PG N ADALSR++ + P+
Sbjct: 788 GRITNESE-PENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDN 846
Query: 1041 -----------HDFLEQLKKEIGNDSHLQTIVQQCVNNTMDDINYMVKEGLLY-WKHRLV 1088
DF Q+ E ND+ L ++ + + N +K+GLL K +++
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNN--EDKRVEENIQLKDGLLINSKDQIL 904
Query: 1089 IPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAK 1148
+P ++ L I+K+YH+ H G+ + +F W +R+ IQ++++ C TCQ K
Sbjct: 905 LPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINK 964
Query: 1149 SVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADY 1208
S N G LQP+P E+ W+ ++MDFIT LP S G+ + VVVDR SK A +P
Sbjct: 965 SRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSI 1024
Query: 1209 SNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQ 1268
+ A F V+ G PK II+D D +FTS+ W+ + S Y PQTDGQ
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQ 1084
Query: 1269 SEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTR 1328
+E N+ +E LRC +P TW ++ V+ YN +H++ M+PF+ ++ P +
Sbjct: 1085 TERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
Query: 1329 YSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDV-SFEVGDQVLVKL 1387
+ SD T+ Q + ++ +KE+L MK D K +++ F+ GD V+VK
Sbjct: 1145 ELPSFSDKTDENSQ--ETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK- 1201
Query: 1388 QPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAYKLQLPETAR--IHPVFHVSQLKIFK 1445
R + L K+NKL + GPF V+ K G Y+L LP++ + FHVS L+ ++
Sbjct: 1202 ---RTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYR 1258
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 362 bits (930), Expect = 3e-99
Identities = 306/1061 (28%), Positives = 493/1061 (45%), Gaps = 112/1061 (10%)
Query: 425 SVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVVRKLSLKVQDID 484
S LLD GS+ + I I CL PI+++ +C VL NG + ++ + +
Sbjct: 24 SYKCLLDTGSTINMINENIF-CL--PIQNS-RCEVLTSNGPITLNDLIMLPRNSIFKK-- 77
Query: 485 ITVPAYLLPVAGS-DVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTLQGESDNKPAVS 543
T P Y+ + + D+++G L + V +Y + + D + + ES+ +
Sbjct: 78 -TEPFYVHRFSNNYDMLIGRKLLKN-AQSVINYKNDTVTLF-DQTYKLITSESER----N 130
Query: 544 QLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMATLLHTYREI-FQIPKG 602
Q + +R A S+ +I+K+D + + + + LL+ +R + ++ +
Sbjct: 131 QNLYIQRTPESIASSDQESIKKLDFSQFRLDHLNQEETFK--LKGLLNKFRNLEYKEGEK 188
Query: 603 LPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSSPII 662
L + H +L P+ K Y + + ++E VQ+ML +G+I+ S SP++SP
Sbjct: 189 LTFTNTIKH-VLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTW 247
Query: 663 LVKKKDGT-----WRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYH 717
+V KK +R DYR LN ITI D +P+P +DE+L +L QYFT +DL G+H
Sbjct: 248 VVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFH 307
Query: 718 QILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDI 777
QI + E KTAF T GHYE+L MPFGL +APATFQR MN + +PLL K LV+ DDI
Sbjct: 308 QIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDI 367
Query: 778 LVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVI 837
+++S S HL +++VF L+ L +L KC F E +LGH+V+ G+ + IKV
Sbjct: 368 IIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVK 427
Query: 838 AVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKK----DAFKWDESTAKA 893
A++ +P PT K++R FLGLTGYYR+FI +YA IA P+T+ LKK D K + +A
Sbjct: 428 AIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLE--YIEA 485
Query: 894 FDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASRMQLQS 953
F+ LK I P+L LPDF + FVL TDAS +GAVLSQ GHPI++ S+ + S
Sbjct: 486 FEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYS 545
Query: 954 AYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFDFQ 1013
A +E AI A FRHYLLG +F++ +D + L+ L + + + W + + F+
Sbjct: 546 AIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFK 605
Query: 1014 IEYKPGKDNQAADALSRVM--------SLSWSAPEHDF---------LEQLKKEIGNDSH 1056
I+Y GK+N ADALSR+ + SA E + + KK+I
Sbjct: 606 IDYIKGKENSVADALSRIKIEENHHSEATQHSAEEDNSNLIHLTEKPINYFKKQIIFIKS 665
Query: 1057 LQTIVQ--QCVNNTMDDINYMV------KEGLL-YWKHR-LVIPMESNLIHQILKEYHDT 1106
+ V+ + N++ I Y V K+ LL ++ HR + I +ES++ +I++ H
Sbjct: 666 DKNKVEHSKIFGNSITTIQYDVMTLEKAKQILLDHFIHRNITIYIESDVDFEIVQRAHIE 725
Query: 1107 PIGG---------------------------------HAGVTRTLARVTAQFYWPNMRQH 1133
+ H G+ + ++PN +
Sbjct: 726 IVNTTYTKVIRSLFLLKNVGSYAEFKEIILQSHEKLLHPGIQKMTKLFKENHFFPNSQLL 785
Query: 1134 IQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVD 1193
IQ I C C AK+ + L+ P PE + +D + + + +D
Sbjct: 786 IQNIINECNICNLAKTEHRNTKMPLKITPNPEHCREKFVVDIYSSEGKHY-----ISCID 840
Query: 1194 RLSKYAHFMPLKAD--YSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQ 1251
SK+A +K R N + G PK + +DRD F+S + + +
Sbjct: 841 IYSKFATLEQIKTKDWIECRNALMRIFNQL----GKPKLLKADRDGAFSSLALKRWLEEE 896
Query: 1252 GTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPK--TWFKALTWVELWYNTFLHTS 1309
L ++T + D E ++K + +R + + K T + + H +
Sbjct: 897 EVELQLNTAKNGVAD--VERLHKTINEKIRIINSSDDEEVKLSKIETILYTYNQKIKHDT 954
Query: 1310 LGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNAD 1369
G P + P+L + ++ + DR + ++ Q+ N
Sbjct: 955 TGQRPAQIFLYAGHPILDTQKIKEKKIEKINE---DRREFNIDTNYRKGPLQKGKLENPF 1011
Query: 1370 KKRKDVSFEVGDQVLVK-----LQPYRQSSVALRKNNKLGM 1405
K K+V D + Y+ +KNNKL +
Sbjct: 1012 KPTKNVEQTDPDHYKITNRNRVTHYYKTQFKKQKKNNKLSI 1052
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 360 bits (924), Expect = 2e-98
Identities = 265/895 (29%), Positives = 430/895 (47%), Gaps = 84/895 (9%)
Query: 589 LLHTYREIFQIPKG-LPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEE 647
++ ++++F I L N I LKEGA+P++ KP P + K +I KM+Q ML +
Sbjct: 909 VIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQ 968
Query: 648 GIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYF 707
+I+ S SP+SSP++LVKKKDG+ R C DYR +N + ++ P+P ++ L L G + +
Sbjct: 969 KVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLY 1028
Query: 708 TKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLR 767
T D+ +G+ QI L + ++ TAF +EW V+PFGL +PA FQ M ++ LL
Sbjct: 1029 TVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLG 1088
Query: 768 KCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGS 827
C V+ DD+L+ S HL+ V+ + ++ + + SKC EVEYLGH V+
Sbjct: 1089 VCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLD 1148
Query: 828 GVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLK-KDAFKW 886
GV ++K + ++ PTN+K+L+ FLGL GYYR+FI ++A IA LT+L+ K A+ W
Sbjct: 1149 GVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIW 1208
Query: 887 DESTAKAFDTLKQAITTAPVLVLPDF------SQPFVLETDASGTGVGAVLSQGG----- 935
++ AF LK+ + PVL PD +PF++ TDAS G+GAVL+Q G
Sbjct: 1209 EKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQ 1268
Query: 936 HPIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSL 995
HPIA+ SK ++ E A+ AL +F+ + G + TD K L SLL S
Sbjct: 1269 HPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSP 1328
Query: 996 QTPEQQAWLHKFIGFDFQIEYKPGKDNQAADALSR-------------------VMSLSW 1036
W + + FD +I Y GK N ADALSR V ++
Sbjct: 1329 LADRLWRWSIEILEFDVKIVYLAGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQT 1388
Query: 1037 SAPE----HDFLEQLKKEIGNDSHLQTIVQQC----VNNTMDDINYMVKEGLLYWK---- 1084
P+ +LE+LK G D + ++ T + + L Y+K
Sbjct: 1389 ELPDILDSSCWLERLK---GEDEGWKEVIAALEGGKTKGTFKIVGIESEISLEYYKIVGG 1445
Query: 1085 ----------HRLVIPMESNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWPNMRQHI 1134
R V+P + +LKE H+ + GH G+ + V +FYWP MR +
Sbjct: 1446 VLKNTEIEEQSRSVVP--EKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCV 1503
Query: 1135 QKFIEACVTCQQAKSVNTTYAGLL-QPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVD 1193
+ + C C A + + L + P ++ MD GL + G I+ ++D
Sbjct: 1504 ENCVRTCAKCLCANDHSKLTSSLTPYRMTFPLEIVACDLMD--VGLSVQ-GNRYILTIID 1560
Query: 1194 RLSKYAHFMPLKADYSNRTVAEAFV-NYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQG 1252
+KY +P+ D TV +AFV + + +P +++D+ K F + + M
Sbjct: 1561 LFTKYGTAVPI-PDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLK 1619
Query: 1253 TTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTFLHTSLGM 1312
+ Y+ + +G E NK + M++ P W + + YN +H + G
Sbjct: 1620 IEHITTKGYNSRANGAVERFNKTI-MHIMKKKTAVPMEWDDQVVYAVYAYNNCVHENTGE 1678
Query: 1313 SPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVE---------LKENLLRAQQV 1363
+P ++GR+ ++ ++ D + MD K L+ KE+ +R Q+
Sbjct: 1679 TPMFLMHGRD--VMGPLEMSGEDAVGINYADMDEYKHLLTQELLKVQKIAKEHAMREQES 1736
Query: 1364 MKSNADKK---RKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIA 1415
KS D+K +K + G +VL+++ + + + NK + GP+ VI+
Sbjct: 1737 YKSLFDQKYASKKHRFPQPGSRVLLEIPSEKLGAQCPKLVNK----WSGPYRVIS 1787
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 353 bits (906), Expect = 2e-96
Identities = 233/623 (37%), Positives = 347/623 (55%), Gaps = 38/623 (6%)
Query: 425 SVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGVVRKLSLKVQDID 484
++ L+D GS+ + I +LPI++T + NG + + ++ + + +
Sbjct: 24 NLKCLIDTGSTVNMTSKNI---FDLPIQNTSTF-IHTSNGPLIVNKSII----IPSKILF 75
Query: 485 ITVPAYLL-PVAGS-DVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTLQGESDNKPAV 542
T +LL P + + D++LG LA ++ Y ++ Y + K+ ++G A
Sbjct: 76 PTTNEFLLHPFSENYDLLLGRKLLAEAKATIS-YRDQEVTLY-NNKYKLIEGI-----AT 128
Query: 543 SQLNHFRRLQHMNAISELFTIQ--KIDPAVIEDNWEGMPVNIEPE--MATLLHTYREIFQ 598
+ +HF Q++N I + Q KI P + D + +N E + + LL Y +I Q
Sbjct: 129 HEQSHF---QNVNMIPDTMLRQPNKISPILESDLYRLEHLNNEEKQRLCALLQKYHDI-Q 184
Query: 599 IPKG--LPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSP 656
+G L + H I K P+ K Y YP + ++++E +QDML +GII+ S SP
Sbjct: 185 YHEGDKLTFTNQTKHTINTKHNL-PLYSK-YSYPQAYEQEVESQIQDMLNQGIIRTSNSP 242
Query: 657 FSSPIILVKKKDGT-----WRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLD 711
++SPI +V KK +R DYR LN IT+ D P+P +DE+L +L YFT +D
Sbjct: 243 YNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTID 302
Query: 712 LRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVL 771
L G+HQI + PE KTAF T GHYE+L MPFGL +APATFQR MN + +PLL K L
Sbjct: 303 LAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCL 362
Query: 772 VFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAM 831
V+ DDI+V+S S HL+ + +VF+ L++ L +L KC F E +LGHV++ G+
Sbjct: 363 VYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKP 422
Query: 832 DKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDESTA 891
+ K+ A+ ++P PT K+++ FLGLTGYYR+FI ++A IA P+T LKK+ K D +
Sbjct: 423 NPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKN-MKIDTTNP 481
Query: 892 K---AFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQGGHPIAYFSKKMASR 948
+ AF LK I+ P+L +PDF++ F L TDAS +GAVLSQ GHP++Y S+ +
Sbjct: 482 EYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEH 541
Query: 949 MQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQQAWLHKFI 1008
S +E AI A FRHYLLG F + +D + L L + W K
Sbjct: 542 EINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLS 601
Query: 1009 GFDFQIEYKPGKDNQAADALSRV 1031
FDF I+Y GK+N ADALSR+
Sbjct: 602 EFDFDIKYIKGKENCVADALSRI 624
Score = 45.1 bits (105), Expect = 0.002
Identities = 62/298 (20%), Positives = 119/298 (39%), Gaps = 20/298 (6%)
Query: 1111 HAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVWDD 1170
H G+ +T +Y+PN + IQ I C C AK+ + + P PE +
Sbjct: 763 HPGIQKTTKLFGETYYFPNSQLLIQNIINECSICNLAKTEHRNTDMPTKTTPKPEHCREK 822
Query: 1171 VTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKS 1230
+D + + + +D SK+A +K + + + + G PK
Sbjct: 823 FMIDIYSSEGKHY-----VSCIDIYSKFATLEEIKT--KDWIECKNALMRIFNQLGKPKL 875
Query: 1231 IISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCF-TFKNPK 1289
+ +DRD F+S + + + L ++TT D E ++K + +R T + +
Sbjct: 876 LKADRDGAFSSLALKRWLESEEVELQLNTTKTGVAD--IERLHKTINEKIRIIKTSDDEE 933
Query: 1290 TWF-KALTWVELWYNTFLHTSLGMSPFKA-LYGREPPMLTRYSVNNSDPTEVQQQLMDRD 1347
T K T + ++ + H + G +P LY +P + T+ + N ++ + DR
Sbjct: 934 TKLSKMETVLNIYNHKTKHDTTGQTPAHIFLYAGQPILDTQQNKEN----KINKINNDRV 989
Query: 1348 KLLVELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLV----KLQPYRQSSVALRKNN 1401
+ V+ + Q+ N K K+V D + ++ Y ++ RK N
Sbjct: 990 EYEVDTRYRKGPLQKGKLENPFKPTKNVEQTDSDHYKITNRNRITHYYKTQFKKRKKN 1047
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 306 bits (785), Expect = 2e-82
Identities = 176/476 (36%), Positives = 272/476 (56%), Gaps = 24/476 (5%)
Query: 579 PVNIEPEMATLLHTYREIFQIP-KGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQI 637
P + + +LL + IF+ P G+ + EI P+ K Y YP + + ++
Sbjct: 81 PDGTQEILNSLLGEFPRIFEPPLSGMSVETAVKAEIRTNT-QDPIYAKSYPYPVNMRGEV 139
Query: 638 EKMVQDMLEEGIIQPSLSPFSSPIILVKKK-----DGTWRCCTDYRALNAITIKDSFPMP 692
E+ + ++L++GII+PS SP++SPI +V KK + +R D++ LN +TI D++P+P
Sbjct: 140 ERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIP 199
Query: 693 TVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPA 752
++ L L A+YFT LDL SG+HQI +K D KTAF T G YE+L +PFGL +APA
Sbjct: 200 DINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPA 259
Query: 753 TFQRLMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSF 812
FQR+++ + + + K V+ DDI+V+S + +H K++ +V LS+ L L K F
Sbjct: 260 IFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHF 319
Query: 813 GITEVEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYATIA 872
T+VE+LG++V+ G+ D KV A+ E P PT++K+L+ FLG+T YYR+FI+ YA +A
Sbjct: 320 LDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVA 379
Query: 873 GPLTNLLK------------KDAFKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLET 920
PLTNL + K DE+ ++F+ LK + ++ +L P F++PF L T
Sbjct: 380 KPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTT 439
Query: 921 DASGTGVGAVLSQG----GHPIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLGH 976
DAS +GAVLSQ PIAY S+ + + + +E AI +L R YL G
Sbjct: 440 DASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGA 499
Query: 977 KFI-LRTDQKSLKSLLDQSLQTPEQQAWLHKFIGFDFQIEYKPGKDNQAADALSRV 1031
I + TD + L L + + W + ++ ++ YKPGK N ADALSR+
Sbjct: 500 GTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRI 555
Score = 60.8 bits (146), Expect = 3e-08
Identities = 74/343 (21%), Positives = 136/343 (39%), Gaps = 49/343 (14%)
Query: 1054 DSHLQTIVQQCVNNTMDDINYMVKEGLLYWKHRLVIPMESNL-----IHQILKEYHDTPI 1108
++HLQ C+ N L +K R+ + +++ I +I+++ H
Sbjct: 658 EAHLQRFQSICLAN------------FLLYKIRITQRLVADVSGAEEICEIIEKEHRR-- 703
Query: 1109 GGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGLLQPLPIPEQVW 1168
H G T ++ ++Y+P M I+ +C C+ K LQP PIP
Sbjct: 704 -AHRGPTEIRLQLLEKYYFPRMSSTIRLQTSSCQCCKLYKYERHPNKPNLQPTPIPNYPC 762
Query: 1169 DDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYS---NRTVAEAFVNYVVKLH 1225
+ + +D + + + +D+ SK+A L++ S T+ EA +
Sbjct: 763 EILHIDI-----FALEKRLYLSCIDKFSKFAKLFHLQSKASVHLRETLVEALHYFTA--- 814
Query: 1226 GMPKSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTF 1285
PK ++SD ++ + + L + T + +GQ E + RC
Sbjct: 815 --PKVLVSDNERGLLCPTVLNYLRSLDIDLYYAPTQKSEVNGQVERFHSTFLEIYRC--L 870
Query: 1286 KNPKTWFKALTWVEL---WYNTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQ 1342
K+ FK + V + YNT +H+ P + R VN T+ ++Q
Sbjct: 871 KDELPTFKPVELVHIAVDRYNTSVHSVTNRKPADVFFDRSS------RVNYQGLTDFRRQ 924
Query: 1343 LMDRDKLLVELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLV 1385
++ K L+E K+ +R N D+ + S+ GD+V V
Sbjct: 925 TLEDIKGLIEYKQ--IRGNMARNKNRDEPK---SYGPGDEVFV 962
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 278 bits (712), Expect = 6e-74
Identities = 173/519 (33%), Positives = 266/519 (50%), Gaps = 28/519 (5%)
Query: 576 EGMPVNIEPEMATLLHTYREIFQIP-KGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQK 634
+ P + ++ + Y +IF + + + N ++ LK+ +PV K YR PHSQ
Sbjct: 269 KNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDD-EPVYTKNYRSPHSQV 327
Query: 635 EQIEKMVQDMLEEGIIQPSLSPFSSPIILVKKKDGT------WRCCTDYRALNAITIKDS 688
E+I+ VQ ++++ I++PS+S ++SP++LV KK WR DYR +N + D
Sbjct: 328 EEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADK 387
Query: 689 FPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLT 748
FP+P +D++LD+L A+YF+ LDL SG+HQI L R T+F T G Y + +PFGL
Sbjct: 388 FPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLK 447
Query: 749 SAPATFQRLMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLS 808
AP +FQR+M F + ++ DD++V S LK++ VF + L
Sbjct: 448 IAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPE 507
Query: 809 KCSFGITEVEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSY 868
KCSF + EV +LGH + G+ D K + +P P + R F+ YYRRFI+++
Sbjct: 508 KCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNF 567
Query: 869 ATIAGPLTNLLKKDA-FKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGV 927
A + +T L KK+ F+W + KAF LK + +L PDFS+ F + TDAS
Sbjct: 568 ADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQAC 627
Query: 928 GAVLSQ--GGH--PIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTD 983
GAVL+Q GH P+AY S+ +S +E AI A+ FR Y+ G F ++TD
Sbjct: 628 GAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTD 687
Query: 984 QKSLKSLLDQSLQTPEQQAWLHKFIGFDFQIEYKPGKDNQAADALSRVMSLSWSAPEHDF 1043
+ L L + + + ++F +EY GKDN ADALSR+
Sbjct: 688 HRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRIT----------- 736
Query: 1044 LEQLKKEIGN----DSHLQTIVQQCVNNTMDDINYMVKE 1078
+++LK GN + Q+ + C D+ KE
Sbjct: 737 IKELKDITGNILKVTTRFQSRQKSCAGKEQLDLQKQTKE 775
Score = 122 bits (305), Expect = 1e-26
Identities = 93/326 (28%), Positives = 156/326 (47%), Gaps = 26/326 (7%)
Query: 1099 ILKEYHDTPI-GGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNTTYAGL 1157
IL HD PI GGH G+T+TLA+V +YW NM ++I++++ C CQ+AK+ T
Sbjct: 896 ILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKT-- 953
Query: 1158 LQPLPI---PEQVWDDVTMDFITGLPLS-FGFTVIMVVVDRLSKYAHFMPLKADYSNRTV 1213
P+ I PE +D V +D I LP S G + ++ L+KY +P+ A+ S +TV
Sbjct: 954 --PMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPI-ANKSAKTV 1010
Query: 1214 AEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVN 1273
A+A + +G K+ I+D + + L + ST +H QT G E +
Sbjct: 1011 AKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSH 1070
Query: 1274 KCLEMYLRCFTFKNPKTWFKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTRYS-VN 1332
+ L Y+R + + W L + +NT P++ ++GR + ++ ++
Sbjct: 1071 RTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLH 1130
Query: 1333 NSDPTEVQQQLMDRDKLLVEL----KENLLRA-QQVMKSNADKKRKDVSFEVGDQVLVKL 1387
+ +P K +E+ LL A ++ K N D K KD+ EVGD+VL++
Sbjct: 1131 SIEPIYNIDDYAKESKYRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLRN 1190
Query: 1388 QPYRQSSVALRKNNKLGMRYFGPFTV 1413
+ +KL +Y GP+ +
Sbjct: 1191 E----------VGHKLDFKYTGPYKI 1206
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 278 bits (711), Expect = 8e-74
Identities = 242/898 (26%), Positives = 396/898 (43%), Gaps = 128/898 (14%)
Query: 578 MPVNIEPEMA-TLLHTYREIFQIPKGLPPNRELSHEILLKEGAQPVKVKPYRYPHSQKEQ 636
+P +++ E T++ + + LP N ++ I + +PV + Y +
Sbjct: 138 VPDSVKKEFKDTIIRRKKAFSTTNEALPFNTAVTATIRTVDN-EPVYSRAYPTLMGVSDF 196
Query: 637 IEKMVQDMLEEGIIQPSLSPFSSPIILVKKK------DGTWRCCTDYRALNAITIKDSFP 690
+ V+ +L++GII+PS SP++SP +V KK + R D+R LN TI D +P
Sbjct: 197 VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYP 256
Query: 691 MPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSA 750
MP++ +L L A++FT LDL+SGYHQI L DR+KT+F + G YE+ +PFGL +A
Sbjct: 257 MPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNA 316
Query: 751 PATFQRLMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKC 810
+ FQR ++ + + + K V+ DD++++S + H++H++ V + L + K
Sbjct: 317 SSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKT 376
Query: 811 SFGITEVEYLGHVVSGSGVAMDKIKVIAVLEWPTPTNLKQLRGFLGLTGYYRRFIRSYAT 870
F VEYLG +VS G D KV A+ E+P P + ++R FLGL YYR FI+ +A
Sbjct: 377 RFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAA 436
Query: 871 IAGPLTNLLK------------KDAFKWDESTAKAFDTLKQAITTAPVLV-LPDFSQPFV 917
IA P+T++LK K +++E+ AF L+ + + V++ PDF +PF
Sbjct: 437 IARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFD 496
Query: 918 LETDASGTGVGAVLSQGGHPIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLGHK 977
L TDAS +G+GAVLSQ G PI S+ + Q + RE AI AL K +++L G +
Sbjct: 497 LTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSR 556
Query: 978 FI-LRTDQKSL----------------KSLLDQ-------------------------SL 995
I + TD + L KS +DQ +L
Sbjct: 557 EINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNLNAL 616
Query: 996 QTPEQQ--AWLHKFIGFDFQIEYKPGKDN---------QAADALSRVMSLSWSAPEH--- 1041
Q Q A +H + + +E N A L R + L S H
Sbjct: 617 QNEPQSDAATIHSELSLTYTVETTDKPLNCFRNQIILEAARFPLKRNLVLFRSKSRHLIS 676
Query: 1042 ----DFLEQLKKEIGNDSHLQTIVQQCVNNTM-----DDINYMVKEGLLYWKHRLVIPME 1092
+L + KE+ N + I C T+ D I + + K+ ++ +
Sbjct: 677 FTDKSWLLKTLKEVVNPDVVNAI--HCDLPTLASFQHDLIAHFPATQFRHCKNVVLDITD 734
Query: 1093 SNLIHQILKEYHDTPIGGHAGVTRTLARVTAQFYWPNMRQHIQKFIEACVTCQQAKSVNT 1152
N +I+ H+ H + +V +Y+P M ++ + C C QAK
Sbjct: 735 KNEQIEIVTAEHNR---AHRAAQENIKQVLRDYYFPKMGSLAKEVVANCRVCTQAKYDRH 791
Query: 1153 TYAGLLQPLPIPEQVWDDVTMDFITGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYSNRT 1212
L PIP + V +D S + + +D+ SKYA P+ + RT
Sbjct: 792 PKKQELGETPIPSYTGEMVHIDIF-----STDRKLFLTCIDKFSKYAIVQPVVS----RT 842
Query: 1213 VAE--AFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQ-GTTLSMSTTYHPQTDGQS 1269
+ + A + ++ L K++ D + F S+ + + G + + H ++GQ
Sbjct: 843 IVDITAPLLQIINLFPNIKTVYCDNEPAFNSETVTSMLKNSFGIDIVNAPPLHSSSNGQV 902
Query: 1270 EAVNKCLEMYLRCFTF-KNPKTWFKALTWVELWYNTFLHTSLGMSPFKALYGREPPMLTR 1328
E + L RC K + + + YN +H
Sbjct: 903 ERFHSTLAEIARCLKLDKKTNDTVELILRATIEYNKTVH--------------------- 941
Query: 1329 YSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLVK 1386
SV P EV + +E+K L++AQQ + R++ FEVG++V VK
Sbjct: 942 -SVTRERPIEVVHP--GAHERCLEIKARLVKAQQDSIGRNNPSRQNRVFEVGERVFVK 996
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 207 bits (528), Expect = 1e-52
Identities = 142/452 (31%), Positives = 230/452 (50%), Gaps = 28/452 (6%)
Query: 603 LPPNRE---LSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSS 659
L PN+ + I L + ++ +KVKP +Y +E+ +K ++++L+ +I+PS SP +
Sbjct: 225 LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMA 284
Query: 660 PIILV----KKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSG 715
P LV +K+ G R +Y+A+N TI D++ +P DELL + G + F+ D +SG
Sbjct: 285 PAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSG 344
Query: 716 YHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFD 775
+ Q+LL E R TAF QGHYEW V+PFGL AP+ FQR M++ F+ + RK V+ D
Sbjct: 345 FWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVD 403
Query: 776 DILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIK 835
DILV+S + HL HV ++ Q +Q+ + K ++ +LG +
Sbjct: 404 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 463
Query: 836 VIAVLEWP-TPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDA-FKWDESTAKA 893
+ + ++P T + KQL+ FLG+ Y +I A I PL LK++ +KW +
Sbjct: 464 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLY 523
Query: 894 FDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVL-----SQGGHP---IAYFSKKM 945
+K+ + P L P + ++ETDAS G +L ++G + Y S
Sbjct: 524 MQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSF 583
Query: 946 ASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQ----- 1000
+ + + +E A+ + KF YL F++RTD KS ++ + + +
Sbjct: 584 KAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNI 643
Query: 1001 --QAWLHKFIGFDFQIEYKPGKDNQAADALSR 1030
QAWL + F +E+ G DN AD LSR
Sbjct: 644 RWQAWLSH---YSFDVEHIKGTDNHFADFLSR 672
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 207 bits (528), Expect = 1e-52
Identities = 142/452 (31%), Positives = 230/452 (50%), Gaps = 28/452 (6%)
Query: 603 LPPNRE---LSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSS 659
L PN+ + I L + ++ +KVKP +Y +E+ +K ++++L+ +I+PS SP +
Sbjct: 225 LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMA 284
Query: 660 PIILV----KKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSG 715
P LV +K+ G R +Y+A+N TI D++ +P DELL + G + F+ D +SG
Sbjct: 285 PAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSG 344
Query: 716 YHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFD 775
+ Q+LL E R TAF QGHYEW V+PFGL AP+ FQR M++ F+ + RK V+ D
Sbjct: 345 FWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVD 403
Query: 776 DILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIK 835
DILV+S + HL HV ++ Q +Q+ + K ++ +LG +
Sbjct: 404 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 463
Query: 836 VIAVLEWP-TPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDA-FKWDESTAKA 893
+ + ++P T + KQL+ FLG+ Y +I A I PL LK++ +KW +
Sbjct: 464 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLY 523
Query: 894 FDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVL-----SQGGHP---IAYFSKKM 945
+K+ + P L P + ++ETDAS G +L ++G + Y S
Sbjct: 524 MQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSF 583
Query: 946 ASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQ----- 1000
+ + + +E A+ + KF YL F++RTD KS ++ + + +
Sbjct: 584 KAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNI 643
Query: 1001 --QAWLHKFIGFDFQIEYKPGKDNQAADALSR 1030
QAWL + F +E+ G DN AD LSR
Sbjct: 644 RWQAWLSH---YSFDVEHIKGTDNHFADFLSR 672
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 206 bits (524), Expect = 4e-52
Identities = 140/452 (30%), Positives = 230/452 (49%), Gaps = 28/452 (6%)
Query: 603 LPPNRE---LSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSS 659
L PN+ + I L + ++ +KVKP +Y +E+ +K ++++L+ +I+PS SP +
Sbjct: 225 LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMA 284
Query: 660 PIILV----KKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSG 715
P LV +K+ G R +Y+A+N T+ D++ +P DELL + G + F+ D +SG
Sbjct: 285 PAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSG 344
Query: 716 YHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFD 775
+ Q+LL E R TAF QGHYEW V+PFGL AP+ FQR M++ F+ + RK V+ D
Sbjct: 345 FWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVD 403
Query: 776 DILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIK 835
DILV+S + HL HV ++ Q +Q+ + K ++ +LG +
Sbjct: 404 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 463
Query: 836 VIAVLEWP-TPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDA-FKWDESTAKA 893
+ + ++P T + KQL+ FLG+ Y +I A I PL LK++ ++W +
Sbjct: 464 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLY 523
Query: 894 FDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVL-----SQGGHP---IAYFSKKM 945
+K+ + P L P + ++ETDAS G +L ++G + Y S
Sbjct: 524 MQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSF 583
Query: 946 ASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQ----- 1000
+ + + +E A+ + KF YL F++RTD KS ++ + + +
Sbjct: 584 KAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNI 643
Query: 1001 --QAWLHKFIGFDFQIEYKPGKDNQAADALSR 1030
QAWL + F +E+ G DN AD LSR
Sbjct: 644 RWQAWLSH---YSFDVEHIKGTDNHFADFLSR 672
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 206 bits (523), Expect = 5e-52
Identities = 141/452 (31%), Positives = 229/452 (50%), Gaps = 28/452 (6%)
Query: 603 LPPNRE---LSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSS 659
L PN+ + I L + ++ +KVKP +Y +E+ +K ++++L+ +I+PS SP +
Sbjct: 220 LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMA 279
Query: 660 PIILV----KKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSG 715
P LV +K+ G R +Y+A+N T+ D++ P DELL + G + F+ D +SG
Sbjct: 280 PAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSG 339
Query: 716 YHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFD 775
+ Q+LL E R TAF QGHYEW V+PFGL AP+ FQR M++ F+ + RK V+ D
Sbjct: 340 FWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVD 398
Query: 776 DILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIK 835
DILV+S + HL HV ++ Q +Q+ + K ++ +LG +
Sbjct: 399 DILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 458
Query: 836 VIAVLEWP-TPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDA-FKWDESTAKA 893
+ + ++P T + KQL+ FLG+ Y +I A I PL LK++ +KW +
Sbjct: 459 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLY 518
Query: 894 FDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVL-----SQGGHP---IAYFSKKM 945
+K+ + P L P + ++ETDAS G +L ++G + Y S
Sbjct: 519 MQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSF 578
Query: 946 ASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQ----- 1000
+ + + +E A+ + KF YL F++RTD KS ++ + + +
Sbjct: 579 KAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNI 638
Query: 1001 --QAWLHKFIGFDFQIEYKPGKDNQAADALSR 1030
QAWL + F +E+ G DN AD LSR
Sbjct: 639 RWQAWLSH---YSFDVEHIKGTDNHFADFLSR 667
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 202 bits (515), Expect = 4e-51
Identities = 138/452 (30%), Positives = 229/452 (50%), Gaps = 28/452 (6%)
Query: 603 LPPNRE---LSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSS 659
L PN+ + I L + ++ +KVKP +Y +E+ +K ++++L+ +I+PS SP +
Sbjct: 226 LDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMA 285
Query: 660 PIILVKKKD----GTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSG 715
P LV + G R +Y+A+N T+ D++ +P DELL + G + F+ D +SG
Sbjct: 286 PAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSG 345
Query: 716 YHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFD 775
+ Q+LL E R TAF QGHYEW V+PFGL AP+ FQR M++ F+ + RK V+ D
Sbjct: 346 FWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVD 404
Query: 776 DILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIK 835
DI+V+S + HL HV ++ Q +Q+ + K ++ +LG +
Sbjct: 405 DIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHI 464
Query: 836 VIAVLEWP-TPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDA-FKWDESTAKA 893
+ + ++P T + KQL+ FLG+ Y +I + A + PL LK++ +KW +
Sbjct: 465 LEHINKFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLY 524
Query: 894 FDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVL-----SQGGHP---IAYFSKKM 945
+K+ + P L P + ++ETDAS G +L ++G + Y S
Sbjct: 525 MQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSF 584
Query: 946 ASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTDQKSLKSLLDQSLQTPEQ----- 1000
+ + + +E A+ + KF YL F++RTD KS ++ + + +
Sbjct: 585 KAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNI 644
Query: 1001 --QAWLHKFIGFDFQIEYKPGKDNQAADALSR 1030
QAWL + F +E+ G DN AD LSR
Sbjct: 645 RWQAWLSH---YSFDVEHIKGTDNHFADFLSR 673
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 666
Score = 194 bits (493), Expect = 2e-48
Identities = 170/644 (26%), Positives = 289/644 (44%), Gaps = 44/644 (6%)
Query: 413 GVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKCNVLVGNGQHMKAEGV 472
G + F+GY ++ +D G+S I R + L V + N + +K V
Sbjct: 37 GKLSFEGYKS-FNIHCYVDTGASLC-IASRYIIPEELWENSPKDIQVKIANQELIKITKV 94
Query: 473 VRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGKFVTL 532
+ L +K +P G D ++G + P + ++ F++ + V +
Sbjct: 95 CKNLKVKFAGKSFEIPTVYQQETGIDFLIGNNFCRLYNPFIQ--WEDRIAFHLKNEMVLI 152
Query: 533 QGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNWEGMPVNIEPEMATLLHT 592
+ + +++ L++M S+ ++I I N +N E +
Sbjct: 153 KKVTK----AFSVSNPSFLENMKKDSKT---EQIPGTNISKNI----INPEERYFLITEK 201
Query: 593 YREIFQI------PKGLPPNRE---LSHEILLKEGAQPVKVKPYRYPHSQKEQIEKMVQD 643
Y++I Q+ + P + + I L + + ++VKP Y +E K +++
Sbjct: 202 YQKIEQLLDKVCSENPIDPIKSKQWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQIKE 261
Query: 644 MLEEGIIQPSLSPFSSPIILVK----KKDGTWRCCTDYRALNAITIKDSFPMPTVDELLD 699
+L+ G+I PS S SP LV+ ++ G R +Y+A+N TI DS +P + ELL
Sbjct: 262 LLDLGLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLT 321
Query: 700 ELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMN 759
L G F+ D +SG+ Q++L E ++ TAF QGH++W V+PFGL AP+ FQR M
Sbjct: 322 LLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQ 381
Query: 760 QLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEY 819
+ C +V+ DDI+V+S S H HV V +I+ + + K + ++ +
Sbjct: 382 TALNGADKFC-MVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINF 440
Query: 820 LGHVVSGSGVAMDKIKVIAVLEWPTP-TNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNL 878
LG + + + ++P + K L+ FLG+ Y +I A I PL
Sbjct: 441 LGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVK 500
Query: 879 LKKD-AFKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGVGAVLS----Q 933
LKKD + W +S + +K+ + + P L LP ++ETDAS + G VL
Sbjct: 501 LKKDVTWNWTQSDSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALD 560
Query: 934 GGHPIAYFSKKMASRMQLQSAY---TREFYAITTALAKFRHYLLGHKFILRTDQKSLKSL 990
G I +S S Q + Y +E A+ + KF YL +F +RTD K+
Sbjct: 561 GVELICRYSS--GSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYF 618
Query: 991 LDQSLQTPEQQA----WLHKFIGFDFQIEYKPGKDNQAADALSR 1030
L +L+ +Q W + F + F +E+ G N AD L+R
Sbjct: 619 LRINLKGDSKQGRLVRWQNWFSKYQFDVEHLEGVKNVLADCLTR 662
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 659
Score = 186 bits (473), Expect = 3e-46
Identities = 156/649 (24%), Positives = 287/649 (44%), Gaps = 47/649 (7%)
Query: 413 GVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHTDKC----NVLVGNGQHMK 468
G+++F GY + + +D GSS ++ P E+ N+ + NG+ ++
Sbjct: 16 GILKFPGYQTNLDLHCYVDTGSSLCMASKYVI-----PEEYWQTAEKPLNIKIANGKIIQ 70
Query: 469 AEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYSVSKLKFYMDGK 528
V KL +++ +P +G D++LG + P + Y D
Sbjct: 71 LTKVCSKLPIRLGGERFLIPTLFQQESGIDLLLGNNFCQLYSPFIQ---------YTDRI 121
Query: 529 FVTLQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDNW-----------EG 577
+ L +S +++ + + ++ + + + +P I N +
Sbjct: 122 YFHLNKQSVIIGKITKAYQYGVKGFLESMKKKSKVNRPEPINITSNQHLFLEEGGNHVDE 181
Query: 578 MPVNIEPEMATLLHTYREIFQIPKGLPPNRE---LSHEILLKEGAQPVKVKPYRYPHSQK 634
M I+ + + E + P + ++ I L + VKVKP Y S +
Sbjct: 182 MLYEIQISKFSAIEEMLERVSSENPIDPEKSKQWMTATIELIDPKTVVKVKPMSYSPSDR 241
Query: 635 EQIEKMVQDMLEEGIIQPSLSPFSSPIILVK----KKDGTWRCCTDYRALNAITIKDSFP 690
E+ ++ ++++LE +I+PS S SP LV+ ++ G R +Y+A+N T D+
Sbjct: 242 EEFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHN 301
Query: 691 MPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLVMPFGLTSA 750
+P DELL + G + ++ D +SG Q+LL E + TAF QGHY+W V+PFGL A
Sbjct: 302 LPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQA 361
Query: 751 PATFQRLMNQLFQPLLRKCVLVFFDDILVYSPSWH-SHLKHVEIVFQILSQNVLYAKLSK 809
P+ F + K V+ DDILV+S + H HV + + + + K
Sbjct: 362 PSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKK 421
Query: 810 CSFGITEVEYLGHVVSGSGVAMDKIKVIAVLEWPTP-TNLKQLRGFLGLTGYYRRFIRSY 868
++ +LG + + + ++P + KQL+ FLG+ Y +I
Sbjct: 422 AQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTYASDYIPKL 481
Query: 869 ATIAGPLTNLLKKDA-FKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLETDASGTGV 927
A+I PL + LK+D+ + W+++ ++ +K+ + + P L P+ + V+ETDAS
Sbjct: 482 ASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFW 541
Query: 928 GAVL----SQGGHPIAYFSKKMASRMQLQSAYTREFYAITTALAKFRHYLLGHKFILRTD 983
G +L + + Y S + + + +E A+ + KF YL +F++RTD
Sbjct: 542 GGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTD 601
Query: 984 QKSLKSLLDQSLQTPEQQA----WLHKFIGFDFQIEYKPGKDNQAADAL 1028
K+ ++ +L+ +Q W +DF +E+ G N AD L
Sbjct: 602 NKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFL 650
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 160 bits (404), Expect = 3e-38
Identities = 124/469 (26%), Positives = 221/469 (46%), Gaps = 39/469 (8%)
Query: 634 KEQIEKMVQDMLEEGIIQPSLSPFSSPIILV-----------KKKDGTWRCCTDYRALNA 682
+E + + + +L+ +I+PS S S +V K+K G R +Y+ LN
Sbjct: 1415 EEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNE 1474
Query: 683 ITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQGHYEWLV 742
T D + +P ++ ++ ++ ++ ++K DL+SG+ Q+ ++ E TAF YEWLV
Sbjct: 1475 NTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLV 1534
Query: 743 MPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYSPSWHSHLKHVEIVFQILSQNV 802
MPFGL +APA FQR M+ +F+ K + V+ DDILV+S + H +H+ + Q+ +N
Sbjct: 1535 MPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENG 1593
Query: 803 LYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVIAVLEWPTP--TNLKQLRGFLGLTGY 860
L +K G E+++LG + + + + + + ++ + +R +LG+ Y
Sbjct: 1594 LILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSY 1653
Query: 861 YRRFIRSYATIAGPLTNLLKKDAFK-WDESTAKAFDTLKQAITTAPVLVLPDFSQPFVLE 919
R +I+ + PL + K + T K +K+ + P L LP ++E
Sbjct: 1654 ARNYIQDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVKNLPDLQLPPKDSFIIIE 1713
Query: 920 TDASGTGVGAVL--SQGGHP-------IAYFSKKMASRMQLQSAYTREFYAITTALAKFR 970
TD TG GAV H AY S S ++S E A L KF+
Sbjct: 1714 TDGCMTGWGAVCKWKMSKHDPRSTERICAYAS---GSFNPIKSTIDAEIQAAIHGLDKFK 1770
Query: 971 HYLLGHK-FILRTDQKSLKSLLDQSLQT-PEQQAWLH-----KFIGFDFQIEYKPGKDNQ 1023
Y L K I+R+D +++ +++ + P + WL +G E+ GK N
Sbjct: 1771 IYYLDKKELIIRSDCEAIIKFYNKTNENKPSRVRWLTFSDFLTGLGITVTFEHIDGKHNG 1830
Query: 1024 AADALSRVMSLSWSAPE---HDFLEQLKK--EIGNDSHLQTIVQQCVNN 1067
ADALSR+++ + + F ++ ++ ND H + ++ +N+
Sbjct: 1831 LADALSRMINFIVEKNDESPYRFTSSVEDALKVCNDDHGRNLISAVIND 1879
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 152 bits (385), Expect = 5e-36
Identities = 144/546 (26%), Positives = 256/546 (46%), Gaps = 51/546 (9%)
Query: 395 EVAEHHLSLNALKGATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNLPIEHT 454
E+ + H L KG + I+ IG + +D G++ F + +I + N I
Sbjct: 4 EIVQKHRVLT--KGNPNVTFIKVS--IGKRNFLAYIDTGATLCFGKRKISN--NWEILKQ 57
Query: 455 DKCNVLVGNGQHMKAEGVVRKLSLKVQDIDITVPAYLLPVAGSDVILGAPWLASLGPHVA 514
K ++ +H E + + LK+++ + +P L +G D+I+G +L P +
Sbjct: 58 PKEIIIADKSKHYIREAI-SNVFLKIENKEFLIPIIYLHDSGLDLIIGNNFLKLYQPFIQ 116
Query: 515 DYSVSKLKFYMDGKFVTLQGESDNKPAVSQLNHFRRLQHMNAISELFTIQKIDPAVIEDN 574
+L++ ++ N P SQ+ + L V++ +
Sbjct: 117 RLETIELRW-----------KNLNNPKESQMISTKILTKNE--------------VLKLS 151
Query: 575 WEGMPVNIEPEM--ATLLHTYREIF-QIPKGLPPNRE-LSHEILLKEGAQPVKVKPYRYP 630
+E + + +E + T+ E+ + P N+ L EI LK+ Q + V R P
Sbjct: 152 FEKIHICLEKYLFFKTIEEQLEEVCSEHPLDETKNKNGLLIEIRLKDPLQEINVTN-RIP 210
Query: 631 HSQKE--QIEKMVQDMLEEGIIQPSLSPFSSPIILVKK----KDGTWRCCTDYRALNAIT 684
++ ++ + ++ +D+L++G+I+ S SP S+P V+ K G R +Y+ +N T
Sbjct: 211 YTIRDVQEFKEECEDLLKKGLIRESQSPHSAPAFYVENHNEIKRGKRRMVINYKKMNEAT 270
Query: 685 IKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTH-QGHYEWLVM 743
I DS+ +P D +L+++ G+ +F+ LD +SGY+Q+ L + TAF Q HYEW V+
Sbjct: 271 IGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVL 330
Query: 744 PFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYSP-SWHSHLKHVEIVFQILSQNV 802
FGL AP+ +QR M+Q + L C L + DDIL+++ S H+ V IV Q + +
Sbjct: 331 SFGLKQAPSIYQRFMDQSLKGLEHIC-LAYIDDILIFTKGSKEQHVNDVRIVLQRIKEKG 389
Query: 803 LYAKLSKCSFGITEVEYLGHVVSGSG-VAMDKIKVIAVLEWPTP-TNLKQLRGFLGLTGY 860
+ K E+EYLG + G+G + + +L++P + KQ++ FLG Y
Sbjct: 390 IIISKKKSKLIQQEIEYLGLKIQGNGEIDLSPHTQEKILQFPDELEDRKQIQRFLGCINY 449
Query: 861 YRR--FIRSYATIAGPLTNLLK-KDAFKWDESTAKAFDTLKQAITTAPVLVLPDFSQPFV 917
F ++ A L + K+ +KWD K ++K I + P L +
Sbjct: 450 IANEGFFKNLALERKHLQKKISVKNPWKWDTIDTKMVQSIKGKIQSLPKLYNASIQDFLI 509
Query: 918 LETDAS 923
+ETDAS
Sbjct: 510 VETDAS 515
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 149 bits (375), Expect = 8e-35
Identities = 104/349 (29%), Positives = 172/349 (48%), Gaps = 19/349 (5%)
Query: 615 LKEGAQPVKVKPYRYPHSQKEQIEKMVQDMLEEGIIQPSLSPFSSPIILVKKKD-GTWRC 673
L+ GA PV V+ Y +E I +Q L+ G++ P SP+++P++ VKK +R
Sbjct: 169 LRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLVPCRSPWNTPLLPVKKPGTNDYRP 228
Query: 674 CTDYRALNAITIKDSFP-MPTVDELLDELHGAQ-YFTKLDLRSGYHQILLKPEDRQKTAF 731
D R +N ++D P +P LL L + +++ LDL+ + + L P + AF
Sbjct: 229 VQDLREINK-RVQDIHPTVPNPYNLLSSLPPSYTWYSVLDLKDAFFCLRLHPNSQPLFAF 287
Query: 732 ------RTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLL----RKCVLVFFDDILVYS 781
+ + G W +P G ++P F +++ P + +L + DD+LV +
Sbjct: 288 EWKDPEKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQVVLLQYVDDLLVAA 347
Query: 782 PSWHSHLKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGHVVSGSGVAMDKIKVIAVLE 841
P++ K + + Q LS+ K EV YLG+++ + + V++
Sbjct: 348 PTYEDCKKGTQKLLQELSKLGYRVSAKKAQLCQREVTYLGYLLKEGKRWLTPARKATVMK 407
Query: 842 WPTPTNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKD-AFKWDESTAKAFDTLKQA 900
P PT +Q+R FLG G+ R +I +A++A PL L K+ F W E +AFD +K+A
Sbjct: 408 IPVPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKA 467
Query: 901 ITTAPVLVLPDFSQPFVLETDASGTGVGAVLSQ----GGHPIAYFSKKM 945
+ +AP L LPD ++PF L D VL+Q P+AY SKK+
Sbjct: 468 LLSAPALALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSKKL 516
Score = 72.8 bits (177), Expect = 7e-12
Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 39/299 (13%)
Query: 1128 PNMRQHIQKFIEACVTCQQAKSVNTTY--AGLLQPLPIPEQVWDDVTMDFITGLPLSFGF 1185
PN++ +++ C C +V TTY G Q P W+ +DF P +G
Sbjct: 839 PNLQSAVREVTSQCQACAMTNAV-TTYRETGKRQRGDRPGVYWE---VDFTEIKPGRYGN 894
Query: 1186 TVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQ 1245
++V +D S + P K + + V + + ++ G+PK + SD F ++ Q
Sbjct: 895 KYLLVFIDTFSGWVEAFPTKTETA-LIVCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQ 953
Query: 1246 HLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWVELWYNTF 1305
L G + Y PQ+ GQ E +N+ ++ L + + L + L
Sbjct: 954 GLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRARN 1013
Query: 1306 LHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQVMK 1365
G++P++ LYG PP+L E + L D+ L L + L+A ++++
Sbjct: 1014 TPGRFGLTPYEILYGGPPPIL-----------ESGETLGPDDRFLPVLFTH-LKALEIVR 1061
Query: 1366 SNADKKRKDV----------SFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVI 1414
+ + K+V F+VGDQVLV+ +R SS L R+ GP+ V+
Sbjct: 1062 TQIWDQIKEVYKPGTVTIPHPFQVGDQVLVR--RHRPSS--------LEPRWKGPYLVL 1110
>M860_ARATH (P92523) Hypothetical mitochondrial protein AtMg00860
(ORF158)
Length = 158
Score = 145 bits (365), Expect = 1e-33
Identities = 69/132 (52%), Positives = 89/132 (67%), Gaps = 2/132 (1%)
Query: 788 LKHVEIVFQILSQNVLYAKLSKCSFGITEVEYLGH--VVSGSGVAMDKIKVIAVLEWPTP 845
+ H+ +V QI Q+ YA KC+FG ++ YLGH ++SG GV+ D K+ A++ WP P
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 846 TNLKQLRGFLGLTGYYRRFIRSYATIAGPLTNLLKKDAFKWDESTAKAFDTLKQAITTAP 905
N +LRGFLGLTGYYRRF+++Y I PLT LLKK++ KW E A AF LK A+TT P
Sbjct: 61 KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120
Query: 906 VLVLPDFSQPFV 917
VL LPD PFV
Sbjct: 121 VLALPDLKLPFV 132
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,797,638
Number of Sequences: 164201
Number of extensions: 8119412
Number of successful extensions: 22336
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 21652
Number of HSP's gapped (non-prelim): 389
length of query: 1569
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1445
effective length of database: 39,613,130
effective search space: 57240972850
effective search space used: 57240972850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)
Medicago: description of AC124965.10