BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124963.24 - phase: 0
(556 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a 56 3e-07
GOLI_DROME (Q06003) Goliath protein (Protein g1) 54 8e-07
RN13_MOUSE (O54965) RING finger protein 13 54 1e-06
RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b 54 1e-06
RN24_HUMAN (Q9Y225) RING finger protein 24 53 2e-06
RN13_HUMAN (O43567) RING finger protein 13 53 2e-06
RN13_CHICK (Q90972) RING finger protein 13 (C-RZF) 53 2e-06
RH1B_ARATH (Q9SUS5) RING-H2 zinc finger protein RHA1b 53 2e-06
RN12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain interacti... 52 4e-06
RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacti... 52 5e-06
RH1A_ARATH (Q9SUS4) RING-H2 zinc finger protein RHA1a 51 7e-06
YOF7_SCHPO (Q9P7E1) RING finger protein P4H10.07 in chromosome II 50 2e-05
Z364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Fragment) 49 4e-05
Z364_MOUSE (Q9D0C1) Zinc finger protein 364 48 6e-05
RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a 47 2e-04
TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repe... 46 2e-04
RNF6_HUMAN (Q9Y252) RING finger protein 6 (RING-H2 protein) 45 5e-04
RH2A_ARATH (Q9ZT50) RING-H2 zinc finger protein RHA2a 45 6e-04
YQOE_CAEEL (Q95QN6) Hypothetical RING finger protein EEED8.16 in... 43 0.002
BBAP_HUMAN (Q8TDB6) B-lymphoma- and BAL-associated protein (Rhys... 43 0.002
>RH3A_ARATH (O22755) RING-H2 zinc finger protein RHA3a
Length = 185
Score = 55.8 bits (133), Expect = 3e-07
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 474 NTGLSEDVLSKCVTETIYCS---SDQCQDEGS---CVICLEEYKNMDDVGTLKTCGHDYH 527
N GL + L T + S +EG C ICL ++ + +++ L CGH +H
Sbjct: 67 NKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFH 126
Query: 528 VSCIKKWLSMKKLCPICKSSALP 550
V CI KWL + CP C+ P
Sbjct: 127 VECIDKWLVSRSSCPSCRRILTP 149
>GOLI_DROME (Q06003) Goliath protein (Protein g1)
Length = 286
Score = 54.3 bits (129), Expect = 8e-07
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 477 LSEDVLSKCVTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLS 536
+++ + K T+T S ++ D C IC+E YK D + L C H++H +CI WL
Sbjct: 102 VTKKAIMKIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILP-CKHEFHKNCIDPWLI 160
Query: 537 MKKLCPICKSSAL 549
+ CP+CK L
Sbjct: 161 EHRTCPMCKLDVL 173
>RN13_MOUSE (O54965) RING finger protein 13
Length = 381
Score = 53.9 bits (128), Expect = 1e-06
Identities = 23/49 (46%), Positives = 30/49 (60%), Gaps = 2/49 (4%)
Query: 503 CVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLS-MKKLCPICKSSALP 550
C ICLEEY++ D + L C H YH C+ WL+ KK CP+CK +P
Sbjct: 240 CAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKVVP 287
>RH3B_ARATH (Q9ZT49) RING-H2 zinc finger protein RHA3b
Length = 200
Score = 53.9 bits (128), Expect = 1e-06
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 492 CSSDQCQDEGS-CVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSALP 550
CSS D + C IC+ E+ +++ L C H +HV+CI KWL+ + CP C+ +P
Sbjct: 101 CSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVP 160
>RN24_HUMAN (Q9Y225) RING finger protein 24
Length = 148
Score = 52.8 bits (125), Expect = 2e-06
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 503 CVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSAL 549
C +CLE++K D++G + C H +H C+ KWL ++K+CP+C L
Sbjct: 78 CAVCLEDFKPRDELG-ICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 123
>RN13_HUMAN (O43567) RING finger protein 13
Length = 381
Score = 52.8 bits (125), Expect = 2e-06
Identities = 22/49 (44%), Positives = 30/49 (60%), Gaps = 2/49 (4%)
Query: 503 CVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLS-MKKLCPICKSSALP 550
C ICL+EY++ D + L C H YH C+ WL+ KK CP+CK +P
Sbjct: 240 CAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKVVP 287
>RN13_CHICK (Q90972) RING finger protein 13 (C-RZF)
Length = 381
Score = 52.8 bits (125), Expect = 2e-06
Identities = 22/49 (44%), Positives = 30/49 (60%), Gaps = 2/49 (4%)
Query: 503 CVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLS-MKKLCPICKSSALP 550
C ICL+EY++ D + L C H YH C+ WL+ KK CP+CK +P
Sbjct: 240 CAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKVVP 287
>RH1B_ARATH (Q9SUS5) RING-H2 zinc finger protein RHA1b
Length = 157
Score = 52.8 bits (125), Expect = 2e-06
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 500 EGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWL--SMKKLCPICKSSALPEDK 553
E C +CL ++ + D + L CGH +H C+ +W+ K CPIC++ LPE+K
Sbjct: 82 EDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRNRFLPEEK 137
>RN12_MOUSE (Q9WTV7) RING finger protein 12 (LIM domain interacting
RING finger protein) (RING finger LIM domain-binding
protein) (R-LIM)
Length = 600
Score = 52.0 bits (123), Expect = 4e-06
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 502 SCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSALPEDKKD 555
+C +C+ EY D + L C H++HV CI +WLS CPIC+ + L ++
Sbjct: 545 TCSVCITEYTEGDKLRKLP-CSHEFHVHCIDRWLSENSTCPICRRAVLSSGNRE 597
>RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacting
RING finger protein) (RING finger LIM domain-binding
protein) (R-LIM) (NY-REN-43 antigen)
Length = 624
Score = 51.6 bits (122), Expect = 5e-06
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 502 SCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSALPEDKKD 555
+C +C+ EY + + L C H+YHV CI +WLS CPIC+ + L ++
Sbjct: 569 TCSVCITEYTEGNKLRKLP-CSHEYHVHCIDRWLSENSTCPICRRAVLASGNRE 621
>RH1A_ARATH (Q9SUS4) RING-H2 zinc finger protein RHA1a
Length = 159
Score = 51.2 bits (121), Expect = 7e-06
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 500 EGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWL--SMKKLCPICKSSALPEDK 553
E C +CL ++++ D V L CGH +H C+ +W+ K CP+C+ LP++K
Sbjct: 83 EDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVCRHRFLPKEK 138
>YOF7_SCHPO (Q9P7E1) RING finger protein P4H10.07 in chromosome II
Length = 583
Score = 50.1 bits (118), Expect = 2e-05
Identities = 28/96 (29%), Positives = 49/96 (50%), Gaps = 7/96 (7%)
Query: 456 DNMSYEELLALGERIGQVNTGL-SEDVLSKCVTETIYCSSDQCQDEGSCVICLEEYKNMD 514
D+ +YE++L L IG + S+ L K + +D+ C++CL ++ D
Sbjct: 482 DSPTYEDMLLLNSIIGIEKPPVASQKDLEKAGGVFPFSGTDE-----RCLVCLSNFELND 536
Query: 515 DVGTLKTCGHDYHVSCIKKWL-SMKKLCPICKSSAL 549
+ LK C H +H CI +WL S + CP+C++ +
Sbjct: 537 ECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTKGV 572
>Z364_HUMAN (Q9Y4L5) Zinc finger protein 364 (Fragment)
Length = 232
Score = 48.5 bits (114), Expect = 4e-05
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 489 TIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSA 548
T+ + +Q C +C E+Y ++V L C H +H SCI WL + CP+C+ S
Sbjct: 142 TVTVTQEQVDMGLECPVCKEDYTVEEEVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSL 200
Query: 549 LPED 552
ED
Sbjct: 201 NGED 204
>Z364_MOUSE (Q9D0C1) Zinc finger protein 364
Length = 305
Score = 48.1 bits (113), Expect = 6e-05
Identities = 22/64 (34%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Query: 489 TIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSA 548
T+ + +Q C +C E+Y + V L C H +H SCI WL + CP+C+ S
Sbjct: 215 TVTVTQEQVNTGLECPVCKEDYTVEEKVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSL 273
Query: 549 LPED 552
ED
Sbjct: 274 NGED 277
>RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a
Length = 174
Score = 46.6 bits (109), Expect = 2e-04
Identities = 16/45 (35%), Positives = 27/45 (59%)
Query: 503 CVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSS 547
C +CL E++ +++ + C H +H+ CI WL CP+C+SS
Sbjct: 105 CCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSS 149
>TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repeat
protein 3) (TPR repeat protein D)
Length = 2025
Score = 46.2 bits (108), Expect = 2e-04
Identities = 22/48 (45%), Positives = 28/48 (57%), Gaps = 2/48 (4%)
Query: 502 SCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSAL 549
SC IC E +K+ + V LK CGH YH C K+WL + CP C+ L
Sbjct: 1956 SCEICHEVFKSKN-VRVLK-CGHKYHKGCFKQWLKGQSACPACQGRDL 2001
>RNF6_HUMAN (Q9Y252) RING finger protein 6 (RING-H2 protein)
Length = 685
Score = 45.1 bits (105), Expect = 5e-04
Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 1/74 (1%)
Query: 476 GLSEDVLSKCVTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWL 535
GL+++ + T +S + C +C+ +Y + + L C H++H+ CI +WL
Sbjct: 605 GLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLP-CMHEFHIHCIDRWL 663
Query: 536 SMKKLCPICKSSAL 549
S CPIC+ L
Sbjct: 664 SENCTCPICRQPVL 677
Score = 30.8 bits (68), Expect = 9.7
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 12/215 (5%)
Query: 251 SHSSLADLSQVSTSLTRDWSQMNV--TPANGRVLLPDASTFG-LETSHFPVGNAAAAAAA 307
S S +A ++ TS+ + S N+ T R P +F L +G AA A
Sbjct: 189 STSPVARRTRSQTSVNFNGSSSNIPRTRLASRGQNPAEGSFSTLGRLRNGIGGAAGIPRA 248
Query: 308 SNATVDVGSFHHDFGTSR-NPTTAQSFQNLTQTARGTRSNYSQRSTPAYRASSSLRLGQA 366
+ + + S + G S Q F G RSN + R+T + +RL
Sbjct: 249 NASRTNFSSHTNQSGGSELRQREGQRFGAAHVWENGARSNVTVRNTN--QRLEPIRLRST 306
Query: 367 TPSDNGLPMVAEG-----YPSRHPRPLNTVGWRNSDRNGRSRISSERYRSLADQAALHAR 421
+ S + P+ + R RP+ R+ R GR+R+ E+ R + +
Sbjct: 307 SNSRSRSPIQRQSGTVYHNSQRESRPVQQTTRRSVRRRGRTRVFLEQDRERERRGTAYTP 366
Query: 422 LSSSEVPGFMIVERASLYG-SRNVLDQHREMRMDI 455
S+S + + VE S + +H + +D+
Sbjct: 367 FSNSRLVSRITVEEGEESSRSSTAVRRHPTITLDL 401
>RH2A_ARATH (Q9ZT50) RING-H2 zinc finger protein RHA2a
Length = 155
Score = 44.7 bits (104), Expect = 6e-04
Identities = 22/64 (34%), Positives = 36/64 (55%), Gaps = 6/64 (9%)
Query: 494 SDQCQDEGS----CVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWL-SMKKLCPICKSSA 548
S +C D G CV+CL + K ++V L+ C H +H C++ WL CP+C+S+
Sbjct: 73 SYRCGDGGGGGSDCVVCLSKLKEGEEVRKLE-CRHVFHKKCLEGWLHQFNFTCPLCRSAL 131
Query: 549 LPED 552
+ +D
Sbjct: 132 VSDD 135
>YQOE_CAEEL (Q95QN6) Hypothetical RING finger protein EEED8.16 in
chromosome II
Length = 590
Score = 43.1 bits (100), Expect = 0.002
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 484 KCVTETIYCSSDQCQ--DEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLC 541
+C T SSD + +C +CLE MDD C H +H C+++W C
Sbjct: 239 ECTTSNDLFSSDDTSLTELPTCAVCLER---MDDSVLAILCNHSFHARCLEQWAD--NTC 293
Query: 542 PICKSSALPE 551
P+C+ PE
Sbjct: 294 PVCRYVQSPE 303
>BBAP_HUMAN (Q8TDB6) B-lymphoma- and BAL-associated protein (Rhysin
2) (Rhysin2)
Length = 740
Score = 43.1 bits (100), Expect = 0.002
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 498 QDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSS 547
+++G CVIC++ N L C H++ CI K +S K +CP C++S
Sbjct: 556 KEKGICVICMDTISNKK---VLPKCKHEFCAPCINKAMSYKPICPTCQTS 602
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.128 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,847,207
Number of Sequences: 164201
Number of extensions: 2988169
Number of successful extensions: 6627
Number of sequences better than 10.0: 189
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 6417
Number of HSP's gapped (non-prelim): 270
length of query: 556
length of database: 59,974,054
effective HSP length: 115
effective length of query: 441
effective length of database: 41,090,939
effective search space: 18121104099
effective search space used: 18121104099
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC124963.24