BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124963.19 - phase: 0 /pseudo
(206 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YKK7_CAEEL (P34284) Hypothetical F-box/LRR-repeat protein C02F5.... 34 0.21
FXLK_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and leuci... 34 0.21
FXLK_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and leuci... 34 0.27
DR21_ARATH (Q9LRR5) Putative disease resistance protein At3g14460 32 0.79
TLR6_MOUSE (Q9EPW9) Toll-like receptor 6 precursor 32 1.4
PRKD_MOUSE (P97313) DNA-dependent protein kinase catalytic subun... 32 1.4
RGP1_DROME (Q9VIW3) Ran GTPase-activating protein (RanGAP) (Segr... 31 2.3
PAC2_YEAST (P39937) PAC2 protein 30 3.0
Y007_MYCPN (P75105) Hypothetical protein MG007 homolog (D12_orf253) 30 3.9
FX37_MOUSE (Q91W61) F-box only protein 37 (F-box/LRR-repeat prot... 30 5.1
FL2_HUMAN (Q9UKC9) F-box/LRR-repeat protein 2 (F-box and leucine... 30 5.1
PRKD_HUMAN (P78527) DNA-dependent protein kinase catalytic subun... 29 6.7
FX37_HUMAN (Q9H469) F-box only protein 37 (F-box/LRR-repeat prot... 29 6.7
FXLE_MOUSE (Q8BID8) F-box/LRR-repeat protein 14 (F-box and leuci... 29 8.8
FXLE_HUMAN (Q8N1E6) F-box/LRR-repeat protein 14 (F-box and leuci... 29 8.8
FL2_MOUSE (Q8BH16) F-box/LRR-repeat protein 2 (F-box and leucine... 29 8.8
>YKK7_CAEEL (P34284) Hypothetical F-box/LRR-repeat protein C02F5.7
in chromosome III
Length = 461
Score = 34.3 bits (77), Expect = 0.21
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 29 ISRSFQMLEVLDLGHPNLFVDGAHPNTAKALINLSLSTPRMREINLSSHSYISDNLFHNL 88
++R + LE LD+ +L D +T +L N + +RE++LS I+D NL
Sbjct: 326 LARGCRQLERLDMEDCSLISD----HTINSLAN---NCTALRELSLSHCELITDESIQNL 378
Query: 89 LYNWRHNLEEVFICNCPNIT 108
R L + + NCP +T
Sbjct: 379 ASKHRETLNVLELDNCPQLT 398
>FXLK_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and
leucine-rich repeat protein 20) (F-box/LRR-repeat
protein 2-like)
Length = 436
Score = 34.3 bits (77), Expect = 0.21
Identities = 31/120 (25%), Positives = 52/120 (42%), Gaps = 9/120 (7%)
Query: 2 AFGNSIPFLTSLVCSNVGSMSRQDISAISRSFQMLEVLDLGHPNLFVDGAHPNTAKALIN 61
A G + P L L + ++ + ++R+ LE +DL D LI
Sbjct: 267 ALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDST-------LIQ 319
Query: 62 LSLSTPRMREINLSSHSYISDNLFHNLLYN--WRHNLEEVFICNCPNITHGIIFNSFSFP 119
LS+ PR++ ++LS I+D+ +L LE + + NCP IT + + S P
Sbjct: 320 LSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCP 379
>FXLK_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and
leucine-rich repeat protein 20) (F-box/LRR-repeat
protein 2-like)
Length = 436
Score = 33.9 bits (76), Expect = 0.27
Identities = 29/109 (26%), Positives = 48/109 (43%), Gaps = 9/109 (8%)
Query: 2 AFGNSIPFLTSLVCSNVGSMSRQDISAISRSFQMLEVLDLGHPNLFVDGAHPNTAKALIN 61
A G + P L L + ++ + ++R+ LE +DL D LI
Sbjct: 267 ALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDST-------LIQ 319
Query: 62 LSLSTPRMREINLSSHSYISDNLFHNLLYN--WRHNLEEVFICNCPNIT 108
LS+ PR++ ++LS I+D+ +L LE + + NCP IT
Sbjct: 320 LSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLIT 368
>DR21_ARATH (Q9LRR5) Putative disease resistance protein At3g14460
Length = 1424
Score = 32.3 bits (72), Expect = 0.79
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 30 SRSFQMLEVLDLGHPNLFVDGAHPNTAKALINLSLST-PRMREINLSSHSYISDNLFHNL 88
+RS+ LE L +G ++ L+N LS P++R +++ H
Sbjct: 1161 TRSYSQLEYLFIG-----------SSCSNLVNFPLSLFPKLRSLSIRDCESFKTFSIHAG 1209
Query: 89 LYNWRHNLEEVFICNCPNITHGIIFNSFSFPDA---PPRVKSLVLSDTGLSQPNIPQPYF 145
L + R LE + I +CPN+ +FP P++ S++LS+ Q + +
Sbjct: 1210 LGDDRIALESLEIRDCPNLE--------TFPQGGLPTPKLSSMLLSNCKKLQALPEKLFG 1261
Query: 146 LNSLTTIKLFSC 157
L SL ++ + C
Sbjct: 1262 LTSLLSLFIIKC 1273
>TLR6_MOUSE (Q9EPW9) Toll-like receptor 6 precursor
Length = 795
Score = 31.6 bits (70), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 120 DAPPRVKSLVLSDTGLSQPNIPQPYFLNSLTTIKL 154
D PPR K+L LS +S+ +P FL+ L ++L
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRL 83
>PRKD_MOUSE (P97313) DNA-dependent protein kinase catalytic subunit
(EC 2.7.1.37) (DNA-PKcs) (P460)
Length = 4128
Score = 31.6 bits (70), Expect = 1.4
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 79 YISDNLFHNLLYNWRHNLEEVFIC-----NCPNITHGIIFNSFSFPDAPPRVKSLVLSDT 133
++ ++FH +RHNLE + C +I + +IF FS D + S+ +
Sbjct: 2214 FLMKHVFHPKRAVFRHNLEIIKTLVECWKECLSIPYRLIFEKFSHKDPNSKDNSVGIQLL 2273
Query: 134 GLSQPNIPQPYFLN-SLTTIKLFSCNISN-QFLSSIKVLPLHTLLLGIHLSW 183
G+ N PY N +T+ F ++N F+ +V +LG+ L +
Sbjct: 2274 GIVIANNLPPYDPNCDITSAMYFEALVNNMSFVKYKEVYAAAAEVLGLILQY 2325
>RGP1_DROME (Q9VIW3) Ran GTPase-activating protein (RanGAP)
(Segregation distorter protein)
Length = 596
Score = 30.8 bits (68), Expect = 2.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 28 AISRSFQMLEVLDLGHPNLFVDGAHPNTAKALINLSLSTPRMREINLSSHSY 79
A+ R + LEV+DLG + DG L+N + P++R +NL +S+
Sbjct: 283 ALERGNERLEVIDLGFNEINSDG-----GLVLVNAMGNKPKLRILNLDGNSF 329
>PAC2_YEAST (P39937) PAC2 protein
Length = 518
Score = 30.4 bits (67), Expect = 3.0
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 21 MSRQDISAISRSFQMLEVLDLGHPNLFVDGAHPNTAKALINLSLSTP-RMREINLSSHSY 79
+S + I + +SF+ L++LDL + NL T+ + N P + E+N+S ++
Sbjct: 215 LSYKHIGKLLKSFRTLKMLDLSYNNL--------TSAGIQNFENEIPCTLEELNISGNNL 266
Query: 80 ISDNLFHNLLYNWRHNLEEVFICNCPNI 107
IS LF L N+ I P+I
Sbjct: 267 ISFPLFPKNLTLKGLNVSNNQISRAPSI 294
>Y007_MYCPN (P75105) Hypothetical protein MG007 homolog (D12_orf253)
Length = 253
Score = 30.0 bits (66), Expect = 3.9
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 103 NCPNITHGIIFNSFSFPDAPP--RVKSLVLSD--TGLSQPNIPQPYFLNSLTTIKLFSCN 158
+C I HG N +SF A P R +L LS+ S+ N Q Y + +L T+ +
Sbjct: 42 SCLEILHGTYNNFYSFDQANPFKREHALHLSEVLNRQSESNQKQLYLIKNLETL---TAT 98
Query: 159 ISNQFLSSIKVLPLHT----------LLLGIHLSWFVRLLISAASNPPF 197
N L I+ P++T ++L LS ++++ A+ PF
Sbjct: 99 AMNSLLRLIEEHPVNTYGVFTTKNENMILPTILSRVQKVVLKKATQLPF 147
>FX37_MOUSE (Q91W61) F-box only protein 37 (F-box/LRR-repeat protein
15)
Length = 296
Score = 29.6 bits (65), Expect = 5.1
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 8 PFLTSLVCSNVGSMSRQDISAISRSFQMLEVLDLGHPNLFVDGAHPNTAKALINLSLSTP 67
P L S+ + G +SR+ + A++ L+ L L H + +VDG AL L+ P
Sbjct: 110 PQLRSVALAGCGQLSRRALGALAEGCPRLQRLSLAHCD-WVDGL------ALRGLADRCP 162
Query: 68 RMREINLSSHSYISD 82
+ E++L++ + D
Sbjct: 163 ALEELDLTACRQLKD 177
>FL2_HUMAN (Q9UKC9) F-box/LRR-repeat protein 2 (F-box and
leucine-rich repeat protein 2) (F-box protein FBL2/FBL3)
Length = 423
Score = 29.6 bits (65), Expect = 5.1
Identities = 21/82 (25%), Positives = 38/82 (45%), Gaps = 7/82 (8%)
Query: 2 AFGNSIPFLTSLVCSNVGSMSRQDISAISRSFQMLEVLDLGHPNLFVDGAHPNTAKALIN 61
A G + P L L + ++ + ++R+ LE +DL L D LI
Sbjct: 254 ALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDST-------LIQ 306
Query: 62 LSLSTPRMREINLSSHSYISDN 83
LS+ P+++ ++LS I+D+
Sbjct: 307 LSIHCPKLQALSLSHCELITDD 328
>PRKD_HUMAN (P78527) DNA-dependent protein kinase catalytic subunit
(EC 2.7.1.37) (DNA-PKcs) (DNPK1) (p460)
Length = 4128
Score = 29.3 bits (64), Expect = 6.7
Identities = 19/72 (26%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Query: 78 SYISDNLFHNLLYNWRHNLEEVFIC-----NCPNITHGIIFNSFSFPDAPPRVKSLVLSD 132
+++ ++FH +RHNLE + +C +I + +IF FS D + S+ +
Sbjct: 2217 NFLMKHVFHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKFSGKDPNSKDNSVGIQL 2276
Query: 133 TGLSQPNIPQPY 144
G+ N PY
Sbjct: 2277 LGIVMANDLPPY 2288
>FX37_HUMAN (Q9H469) F-box only protein 37 (F-box/LRR-repeat protein
15)
Length = 296
Score = 29.3 bits (64), Expect = 6.7
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 8 PFLTSLVCSNVGSMSRQDISAISRSFQMLEVLDLGHPNLFVDGAHPNTAKALINLSLSTP 67
P L S+ G +SR+ + A++ L+ L L H + +VDG AL L+ P
Sbjct: 110 PQLRSVALGGCGQLSRRALGALAEGCPRLQRLSLAHCD-WVDGL------ALRGLADRCP 162
Query: 68 RMREINLSSHSYISD 82
+ E++L++ + D
Sbjct: 163 ALEELDLTACRQLKD 177
>FXLE_MOUSE (Q8BID8) F-box/LRR-repeat protein 14 (F-box and
leucine-rich repeat protein 14)
Length = 400
Score = 28.9 bits (63), Expect = 8.8
Identities = 41/167 (24%), Positives = 72/167 (42%), Gaps = 16/167 (9%)
Query: 2 AFGNSIPFLTSLVCSNVGSMSRQDISAISRSFQMLEVLDLGHPNLFVDGAHPNTAKALIN 61
AF I L +L S ++ + I++ + LEVL+LG G T L+
Sbjct: 111 AFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELG-------GCSNITNTGLLL 163
Query: 62 LSLSTPRMREINLSSHSYISDNLFHNLLYNWRH------NLEEVFICNCPNITHGIIFNS 115
++ R++ +NL S ++SD +L R LE++ + +C +T +
Sbjct: 164 IAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLT-DLSLKH 222
Query: 116 FSFPDAPPRVKSLVLSDTGLSQPNIPQPYFLNSLTTIKLFSC-NISN 161
S R+ +L G+S + + SL ++ L SC NIS+
Sbjct: 223 ISRGLTGLRLLNLSFCG-GISDAGLLHLSHMGSLRSLNLRSCDNISD 268
>FXLE_HUMAN (Q8N1E6) F-box/LRR-repeat protein 14 (F-box and
leucine-rich repeat protein 14)
Length = 418
Score = 28.9 bits (63), Expect = 8.8
Identities = 41/167 (24%), Positives = 72/167 (42%), Gaps = 16/167 (9%)
Query: 2 AFGNSIPFLTSLVCSNVGSMSRQDISAISRSFQMLEVLDLGHPNLFVDGAHPNTAKALIN 61
AF I L +L S ++ + I++ + LEVL+LG G T L+
Sbjct: 111 AFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLELG-------GCSNITNTGLLL 163
Query: 62 LSLSTPRMREINLSSHSYISDNLFHNLLYNWRH------NLEEVFICNCPNITHGIIFNS 115
++ R++ +NL S ++SD +L R LE++ + +C +T +
Sbjct: 164 IAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLT-DLSLKH 222
Query: 116 FSFPDAPPRVKSLVLSDTGLSQPNIPQPYFLNSLTTIKLFSC-NISN 161
S R+ +L G+S + + SL ++ L SC NIS+
Sbjct: 223 ISRGLTGLRLLNLSFCG-GISDAGLLHLSHMGSLRSLNLRSCDNISD 268
>FL2_MOUSE (Q8BH16) F-box/LRR-repeat protein 2 (F-box and
leucine-rich repeat protein 2)
Length = 423
Score = 28.9 bits (63), Expect = 8.8
Identities = 20/81 (24%), Positives = 37/81 (44%), Gaps = 7/81 (8%)
Query: 2 AFGNSIPFLTSLVCSNVGSMSRQDISAISRSFQMLEVLDLGHPNLFVDGAHPNTAKALIN 61
A G + P L L + ++ + ++R+ LE +DL L D L+
Sbjct: 254 ALGLNCPRLQVLEAARCSHLTDAGFTLLARNCHELEKMDLEECVLITDST-------LVQ 306
Query: 62 LSLSTPRMREINLSSHSYISD 82
LS+ P+++ ++LS I+D
Sbjct: 307 LSIHCPKLQALSLSHCELITD 327
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,089,951
Number of Sequences: 164201
Number of extensions: 935064
Number of successful extensions: 2689
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2685
Number of HSP's gapped (non-prelim): 18
length of query: 206
length of database: 59,974,054
effective HSP length: 105
effective length of query: 101
effective length of database: 42,732,949
effective search space: 4316027849
effective search space used: 4316027849
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC124963.19