BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124958.16 + phase: 0
(248 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPOB_RICTY (P77941) DNA-directed RNA polymerase beta chain (EC 2... 35 0.17
RPOB_RICPR (O52271) DNA-directed RNA polymerase beta chain (EC 2... 35 0.17
RPOB_RICMA (Q9RH43) DNA-directed RNA polymerase beta chain (EC 2... 35 0.17
RPOB_RICCN (Q9RH41) DNA-directed RNA polymerase beta chain (EC 2... 35 0.17
SYW_YERPE (Q8ZJF2) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 33 0.64
PSD1_DROME (Q9V3P6) 26S proteasome non-ATPase regulatory subunit... 33 0.64
PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (Early developme... 32 1.4
Y099_PYRHO (O57823) Hypothetical UPF0097 protein PH0099 32 1.9
SYW_SHIFL (Q83JA5) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 32 1.9
SYW_ECOLI (P00954) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 32 1.9
SYW_ECOL6 (P67588) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 32 1.9
SYW_ECO57 (P67589) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 32 1.9
TYDP_DROME (Q9VQM4) Probable tyrosyl-DNA phosphodiesterase (EC 3... 31 2.4
SYW_SALTY (Q8XGS1) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 31 2.4
PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (Early developme... 31 2.4
DCAM_CATRO (Q42679) S-adenosylmethionine decarboxylase proenzyme... 31 2.4
SYW_SHEON (Q8EK12) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 31 3.2
ILVD_AERPE (Q9YG88) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 31 3.2
BTHD_DROME (Q9VYB0) Selenoprotein BthD precursor (dSelM) 31 3.2
SYW_PASMU (P57956) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 30 4.2
>RPOB_RICTY (P77941) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1374
Score = 35.0 bits (79), Expect = 0.17
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 3 LPRGIQI---SYPLLYKGLKATSTTHKNLLLPTSFNSHFTLSHSRSIMGMVFGKIGVETP 59
+P I+I SY + L + KN L + NS F +S S +I + F K +TP
Sbjct: 32 IPNLIEIQKNSYERNFLQLNIKDSERKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTP 91
Query: 60 KYEVTKTTQ 68
KY+V + +Q
Sbjct: 92 KYDVDECSQ 100
>RPOB_RICPR (O52271) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1374
Score = 35.0 bits (79), Expect = 0.17
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 3 LPRGIQI---SYPLLYKGLKATSTTHKNLLLPTSFNSHFTLSHSRSIMGMVFGKIGVETP 59
+P I+I SY + L + KN L + NS F +S S +I + F K +TP
Sbjct: 32 IPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTP 91
Query: 60 KYEVTKTTQ 68
KY+V + +Q
Sbjct: 92 KYDVDECSQ 100
>RPOB_RICMA (Q9RH43) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1373
Score = 35.0 bits (79), Expect = 0.17
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 3 LPRGIQI---SYPLLYKGLKATSTTHKNLLLPTSFNSHFTLSHSRSIMGMVFGKIGVETP 59
+P I+I SY + L + KN L + NS F +S S +I + F K +TP
Sbjct: 32 IPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTP 91
Query: 60 KYEVTKTTQ 68
KY+V + +Q
Sbjct: 92 KYDVEECSQ 100
>RPOB_RICCN (Q9RH41) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1373
Score = 35.0 bits (79), Expect = 0.17
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 3 LPRGIQI---SYPLLYKGLKATSTTHKNLLLPTSFNSHFTLSHSRSIMGMVFGKIGVETP 59
+P I+I SY + L + KN L + NS F +S S +I + F K +TP
Sbjct: 32 IPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTP 91
Query: 60 KYEVTKTTQ 68
KY+V + +Q
Sbjct: 92 KYDVEECSQ 100
>SYW_YERPE (Q8ZJF2) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
(Tryptophan--tRNA ligase) (TrpRS)
Length = 342
Score = 33.1 bits (74), Expect = 0.64
Identities = 20/75 (26%), Positives = 34/75 (44%)
Query: 124 PVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKPTDERVVIREE 183
P I K A +++ P S + RN ++ + S +K + A +DE +IR +
Sbjct: 185 PFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYD 244
Query: 184 GERKYGVVKFSGVAS 198
E+K GV + S
Sbjct: 245 VEKKAGVSNLLDILS 259
>PSD1_DROME (Q9V3P6) 26S proteasome non-ATPase regulatory subunit 1
(26S proteasome regulatory subunit RPN2) (26S proteasome
regulatory complex subunit p110)
Length = 1020
Score = 33.1 bits (74), Expect = 0.64
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 135 AMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKPTDERVVIREEGERKYGVVKFS 194
A AP+ K SEE R K+ T + + ++ E A K DE++ + E+ + V K
Sbjct: 828 AYPAPLEEKKSEE--REKVATAVLSIAARQKRRENADKKEDEKMDVDEDSKEGAAVKKDE 885
Query: 195 GVASDE--VVKEKVEK 208
+DE V EK +K
Sbjct: 886 EAKADEKMVTDEKPKK 901
>PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (Early development
regulator protein 1) (MPH1) (RAE-28)
Length = 1012
Score = 32.0 bits (71), Expect = 1.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 135 AMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKPTDERVVIREEGE 185
A T V K+ E ER+ + + +LP+ A E+PK +E+ + E+ E
Sbjct: 642 AQTLAVKRKAESEEERDDLSALASVLPTKASPAAESPKVIEEKNSLGEKAE 692
>Y099_PYRHO (O57823) Hypothetical UPF0097 protein PH0099
Length = 184
Score = 31.6 bits (70), Expect = 1.9
Identities = 23/86 (26%), Positives = 43/86 (49%), Gaps = 11/86 (12%)
Query: 151 NKMVTMQFILPSSYEKAEE--------APKPTDERVVIREEG---ERKYGVVKFSGVASD 199
N +T++F+ + E+AEE A K V ++ G Y V ++G+ +D
Sbjct: 38 NLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKVKGIGVFPNPNYIRVIWAGIEND 97
Query: 200 EVVKEKVEKLRLSLERDGFKVIGDFL 225
E+++E ++ L + GFK G+F+
Sbjct: 98 EIIREMAREIEDELAKLGFKKEGNFV 123
>SYW_SHIFL (Q83JA5) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
(Tryptophan--tRNA ligase) (TrpRS)
Length = 334
Score = 31.6 bits (70), Expect = 1.9
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 124 PVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKPTDERVVIREE 183
P I K A +++ P S + RN ++ + S +K + A +DE V+R +
Sbjct: 177 PFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVKKIKRAVTDSDEPPVVRYD 236
Query: 184 GERKYGVVKFSGVASDEVVKEKVEKLRLSLE 214
+ K GV + S V + + +L E
Sbjct: 237 VQNKAGVSNLLDILS-AVTGQSIPELEKQFE 266
>SYW_ECOLI (P00954) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
(Tryptophan--tRNA ligase) (TrpRS)
Length = 334
Score = 31.6 bits (70), Expect = 1.9
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 124 PVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKPTDERVVIREE 183
P I K A +++ P S + RN ++ + S +K + A +DE V+R +
Sbjct: 177 PFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVKKIKRAVTDSDEPPVVRYD 236
Query: 184 GERKYGVVKFSGVASDEVVKEKVEKLRLSLE 214
+ K GV + S V + + +L E
Sbjct: 237 VQNKAGVSNLLDILS-AVTGQSIPELEKQFE 266
>SYW_ECOL6 (P67588) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
(Tryptophan--tRNA ligase) (TrpRS)
Length = 334
Score = 31.6 bits (70), Expect = 1.9
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 124 PVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKPTDERVVIREE 183
P I K A +++ P S + RN ++ + S +K + A +DE V+R +
Sbjct: 177 PFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVKKIKRAVTDSDEPPVVRYD 236
Query: 184 GERKYGVVKFSGVASDEVVKEKVEKLRLSLE 214
+ K GV + S V + + +L E
Sbjct: 237 VQNKAGVSNLLDILS-AVTGQSIPELEKQFE 266
>SYW_ECO57 (P67589) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
(Tryptophan--tRNA ligase) (TrpRS)
Length = 334
Score = 31.6 bits (70), Expect = 1.9
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 124 PVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKPTDERVVIREE 183
P I K A +++ P S + RN ++ + S +K + A +DE V+R +
Sbjct: 177 PFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVKKIKRAVTDSDEPPVVRYD 236
Query: 184 GERKYGVVKFSGVASDEVVKEKVEKLRLSLE 214
+ K GV + S V + + +L E
Sbjct: 237 VQNKAGVSNLLDILS-AVTGQSIPELEKQFE 266
>TYDP_DROME (Q9VQM4) Probable tyrosyl-DNA phosphodiesterase (EC
3.1.4.-) (Tyr-DNA phosphodiesterase) (Glaikit protein)
Length = 580
Score = 31.2 bits (69), Expect = 2.4
Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 4/62 (6%)
Query: 91 KGNKDGGFMVLANYIGALGNPQNTKPEKI----AMTAPVITKGSAEKIAMTAPVVTKSSE 146
KGN+ G + + ANY + + Q EK+ A S+ K A+TAPV + SS
Sbjct: 32 KGNESGDYEIPANYSSEMIHTQLKLLEKLFPKQATNKEQEAHSSSSKPAVTAPVASGSSS 91
Query: 147 EG 148
G
Sbjct: 92 SG 93
>SYW_SALTY (Q8XGS1) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
(Tryptophan--tRNA ligase) (TrpRS)
Length = 334
Score = 31.2 bits (69), Expect = 2.4
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 124 PVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKPTDERVVIREE 183
P I K A +++ P S + RN ++ + S +K + A +DE V+R +
Sbjct: 177 PFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVKKIKRAVTDSDEPPVVRYD 236
Query: 184 GERKYGVVKFSGVASDEVVKEKVEKLRLSLE 214
+ K GV + S V + + +L E
Sbjct: 237 VKEKAGVSNLLDILS-AVTGQSIPELEKQFE 266
>PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (Early development
regulator protein 1) (HPH1)
Length = 1004
Score = 31.2 bits (69), Expect = 2.4
Identities = 16/49 (32%), Positives = 26/49 (52%)
Query: 137 TAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKPTDERVVIREEGE 185
T V K+ E ER+ + T+ +LP+ E+PK DE+ + E+ E
Sbjct: 636 TLAVKRKADSEEERDDVSTLGSMLPAKASPVAESPKVMDEKSSLGEKAE 684
>DCAM_CATRO (Q42679) S-adenosylmethionine decarboxylase proenzyme
(EC 4.1.1.50) (AdoMetDC) (SamDC) [Contains:
S-adenosylmethionine decarboxylase alpha chain;
S-adenosylmethionine decarboxylase beta chain]
Length = 357
Score = 31.2 bits (69), Expect = 2.4
Identities = 14/52 (26%), Positives = 28/52 (52%)
Query: 37 HFTLSHSRSIMGMVFGKIGVETPKYEVTKTTQDYEIRIYAPSVAAEVTYDPS 88
H + S ++ FGK+G+E+ + + Q + +Y+ SV +E + DP+
Sbjct: 128 HRSFSEEVELLDNYFGKLGLESNAFIMGNPDQPQKWHVYSASVGSEQSSDPT 179
>SYW_SHEON (Q8EK12) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
(Tryptophan--tRNA ligase) (TrpRS)
Length = 332
Score = 30.8 bits (68), Expect = 3.2
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 113 NTKPEKIAMTAPVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPK 172
N E + P I + A+ +++ P+ S + RN ++ + + +K ++A
Sbjct: 166 NAYGETFTIPEPFIPEHGAKVMSLQDPLKKMSKSDDNRNNVIGLLEDPKAVMKKLKKAMT 225
Query: 173 PTDERVVIREEGERKYGVVK----FSGVASDEVVKEKVE 207
+DE V+R + E K GV SG+ + + E
Sbjct: 226 DSDEPPVVRFDIENKPGVSNLLSLMSGITGQSIASLEAE 264
>ILVD_AERPE (Q9YG88) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)
Length = 557
Score = 30.8 bits (68), Expect = 3.2
Identities = 15/46 (32%), Positives = 26/46 (55%), Gaps = 2/46 (4%)
Query: 91 KGNKDGGFMVLANYIGALGNPQNTKPEKIAMTAPVITKGSAEKIAM 136
+G + G +V+ Y+G G P PE + +TA ++ G EK+A+
Sbjct: 424 RGYVEEGDVVVVRYVGPKGAPG--MPEMLKITAAIVGAGLGEKVAL 467
>BTHD_DROME (Q9VYB0) Selenoprotein BthD precursor (dSelM)
Length = 249
Score = 30.8 bits (68), Expect = 3.2
Identities = 22/75 (29%), Positives = 36/75 (47%), Gaps = 4/75 (5%)
Query: 105 IGALGNPQNTKPEKIAMTAPVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSS- 163
+G LG+ Q +K + + I +E IA +P ++S+EE + NK T S
Sbjct: 116 VGILGDQQESKEQTNTQKSSKIDLPGSEAIA--SPKKSESTEEAQENKAPTSTSTSRKSK 173
Query: 164 -YEKAEEAPKPTDER 177
+K+EE P D +
Sbjct: 174 KEQKSEEEPTQVDSK 188
>SYW_PASMU (P57956) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
(Tryptophan--tRNA ligase) (TrpRS)
Length = 333
Score = 30.4 bits (67), Expect = 4.2
Identities = 22/92 (23%), Positives = 40/92 (42%), Gaps = 4/92 (4%)
Query: 120 AMTAPVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKPTDERVV 179
A+ P I K A +++ P S + RN ++ + + +K + A +DE V
Sbjct: 173 AVPEPFIPKAGARVMSLLEPEKKMSKSDENRNNVIGLLEDPKAVAKKIKRAVTDSDEPPV 232
Query: 180 IREEGERKYGVVK----FSGVASDEVVKEKVE 207
+R + + K GV SGV + + + E
Sbjct: 233 VRYDVQNKAGVSNLLDILSGVTGKSIAELETE 264
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,639,133
Number of Sequences: 164201
Number of extensions: 1275553
Number of successful extensions: 2928
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2895
Number of HSP's gapped (non-prelim): 43
length of query: 248
length of database: 59,974,054
effective HSP length: 107
effective length of query: 141
effective length of database: 42,404,547
effective search space: 5979041127
effective search space used: 5979041127
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Medicago: description of AC124958.16