BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124952.8 - phase: 0 /pseudo
(819 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATU_DROME (Q94546) Another transcription unit protein 34 1.8
RL22_STRPY (Q9A1W9) 50S ribosomal protein L22 33 3.0
RL22_STRP8 (Q7CNQ0) 50S ribosomal protein L22 33 3.0
RL22_STRP3 (Q7CFL3) 50S ribosomal protein L22 33 3.0
AHM4_ARATH (Q9SZW5) Potential cadmium/zinc-transporting ATPase 4... 33 4.0
ATP6_BUCAP (O51878) ATP synthase a chain (EC 3.6.3.14) (ATPase p... 32 5.2
YUXG_BACSU (P40747) Hypothetical oxidoreductase yuxG (EC 1.-.-.-... 32 6.8
YNBB_ECOLI (P76091) Hypothetical protein ynbB 32 8.9
SAG1_YEAST (P20840) Alpha-agglutinin precursor (AG-alpha-1) 32 8.9
DXR_AQUAE (O66722) 1-deoxy-D-xylulose 5-phosphate reductoisomera... 32 8.9
>ATU_DROME (Q94546) Another transcription unit protein
Length = 725
Score = 33.9 bits (76), Expect = 1.8
Identities = 29/82 (35%), Positives = 41/82 (49%), Gaps = 4/82 (4%)
Query: 720 NGHANSETRDNALIAERCMHSGSRSSGTPDIPWLKRVRELAK---GSFSKDRSGVQITDP 776
+G A S+ R + + R + SR SGTP+ P R L GS RSG +
Sbjct: 78 SGSARSK-RSRSAHSRRSGSARSRKSGTPESPQSHRSGSLQSRKSGSPQSRRSGSPQSRK 136
Query: 777 STSSTTRWSGFWGNKRSGSSSS 798
S S+ +R SG ++RSGS+ S
Sbjct: 137 SGSTHSRRSGSAHSRRSGSARS 158
>RL22_STRPY (Q9A1W9) 50S ribosomal protein L22
Length = 114
Score = 33.1 bits (74), Expect = 3.0
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
Query: 689 LFRGLKVASIGFVLYFIPQKWIKNLEKKLPQNGHANSET-----RDNALIAERCMHSGSR 743
L RG KVA +L F P K + +EK L + AN+E + N +++E + G
Sbjct: 27 LIRGKKVADAIAILKFTPNKAARVIEKTL-NSAIANAENNFGLEKANLVVSETFANEG-- 83
Query: 744 SSGTPDIPWLKRVRELAKGSFS 765
P +KR R AKGS S
Sbjct: 84 -------PTMKRFRPRAKGSAS 98
>RL22_STRP8 (Q7CNQ0) 50S ribosomal protein L22
Length = 114
Score = 33.1 bits (74), Expect = 3.0
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
Query: 689 LFRGLKVASIGFVLYFIPQKWIKNLEKKLPQNGHANSET-----RDNALIAERCMHSGSR 743
L RG KVA +L F P K + +EK L + AN+E + N +++E + G
Sbjct: 27 LIRGKKVADAIAILKFTPNKAARVIEKTL-NSAIANAENNFGLEKANLVVSETFANEG-- 83
Query: 744 SSGTPDIPWLKRVRELAKGSFS 765
P +KR R AKGS S
Sbjct: 84 -------PTMKRFRPRAKGSAS 98
>RL22_STRP3 (Q7CFL3) 50S ribosomal protein L22
Length = 114
Score = 33.1 bits (74), Expect = 3.0
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
Query: 689 LFRGLKVASIGFVLYFIPQKWIKNLEKKLPQNGHANSET-----RDNALIAERCMHSGSR 743
L RG KVA +L F P K + +EK L + AN+E + N +++E + G
Sbjct: 27 LIRGKKVADAIAILKFTPNKAARVIEKTL-NSAIANAENNFGLEKANLVVSETFANEG-- 83
Query: 744 SSGTPDIPWLKRVRELAKGSFS 765
P +KR R AKGS S
Sbjct: 84 -------PTMKRFRPRAKGSAS 98
>AHM4_ARATH (Q9SZW5) Potential cadmium/zinc-transporting ATPase 4
(EC 3.6.3.3) (EC 3.6.3.5)
Length = 760
Score = 32.7 bits (73), Expect = 4.0
Identities = 29/118 (24%), Positives = 50/118 (41%), Gaps = 18/118 (15%)
Query: 44 SSFKILKPNL-MYSLLVSLSST------------VQYSRAILVMDKNFCTDIAGNSFTRM 90
S F+ L P++ ++ LL +SS + Y+R++ V K DI N F
Sbjct: 410 SDFRSLSPSINLHKLLYWVSSIECKSSHPMAAALIDYARSVSVEPK---PDIVEN-FQNF 465
Query: 91 PNSSVYIHIDRRKVYVNIRTHVPEKLVQINSETRTVQATNDHNKLKVYLYFSAPVLNS 148
P VY ID + +Y+ + ++ + ++AT K Y+Y A + S
Sbjct: 466 PGEGVYGRIDGQDIYIG-NKRIAQRAGCLTDNVPDIEATMKRGKTIGYIYMGAKLTGS 522
>ATP6_BUCAP (O51878) ATP synthase a chain (EC 3.6.3.14) (ATPase
protein 6)
Length = 272
Score = 32.3 bits (72), Expect = 5.2
Identities = 27/125 (21%), Positives = 55/125 (43%), Gaps = 25/125 (20%)
Query: 564 VFLESIRRVSLGILAGV---------FIHTRSQS---SKSPIIIMLSITSFMLFFMVLKK 611
+F ++++ G+ G+ FI + +S K+P+I LS+T F+ F++
Sbjct: 60 IFYTVAKKITTGVPNGLQASIELIFDFIRSNVKSMYQGKNPLIAPLSLTVFVWVFLMNLM 119
Query: 612 PFIKKKVQLVEIISLTCEVAF-FATCFVLLKKDFSVRTETKFGIFMLVLF-------LVG 663
I ++ E F F ++ D ++ G+F+L+LF L+G
Sbjct: 120 DLIP-----IDFFPFISERFFHFPAMRIVPSADINITLSMSLGVFILILFYSVKMKGLIG 174
Query: 664 YCSQI 668
+C ++
Sbjct: 175 FCKEL 179
>YUXG_BACSU (P40747) Hypothetical oxidoreductase yuxG (EC 1.-.-.-)
(ORF2)
Length = 689
Score = 32.0 bits (71), Expect = 6.8
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 25/113 (22%)
Query: 378 SSEYQQYFERNSEKNGTYGALVFPRFEIFLLFLALPGICKASTGLIRGGAPAAMAVGIIL 437
+SEYQ YF RN + FE + +PGI G++ G AM+
Sbjct: 330 TSEYQAYFTRNQQDGDQI-------FESAPRVILIPGI-----GMVNTGKSYAMSK---- 373
Query: 438 LIFVSTVLLALFMFLSVGITFGKLLQYKEVHHEGETFH---WYQELIRVTLGP 487
VS L + + G T L Q+ + HE E++H W EL ++TL P
Sbjct: 374 ---VSGALYRRAIAVMKGAT--ALGQFVSL-HENESYHVEYWPLELYKLTLAP 420
>YNBB_ECOLI (P76091) Hypothetical protein ynbB
Length = 298
Score = 31.6 bits (70), Expect = 8.9
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 395 YGALVFPRFEIFLLFLALPGICKASTGLIRGGAP-------AAMAVGIILLIFVSTVLLA 447
Y + F FE+FLLF+ L G +TG + G P +A+ G I+ +F +
Sbjct: 95 YLLIGFNCFELFLLFIPLAGFLILATGQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAW 154
Query: 448 LFMFLSVGITFGKLL 462
L M + I G LL
Sbjct: 155 LLMLPTTNIQGGALL 169
>SAG1_YEAST (P20840) Alpha-agglutinin precursor (AG-alpha-1)
Length = 650
Score = 31.6 bits (70), Expect = 8.9
Identities = 29/110 (26%), Positives = 52/110 (46%), Gaps = 9/110 (8%)
Query: 106 VNIRTHVPEKLVQINSETRT-VQAT-NDHNKLKVYLYFSAPVLNSSTEIMNSLKVSQGSL 163
VN+ T + SE T V AT N N S+P +S+ +++SL VS+ L
Sbjct: 479 VNVHTENITNTAAVPSEEPTFVNATRNSLNSFCSSKQPSSPSSYTSSPLVSSLSVSKTLL 538
Query: 164 -------LPTSAENLGNRRFGFMIANISSTAIISVNFNSKSIITRQGTQV 206
+PTS + + G+ +T+ + +N S++ ++ QGT++
Sbjct: 539 STSFTPSVPTSNTYIKTKNTGYFEHTALTTSSVGLNSFSETAVSSQGTKI 588
>DXR_AQUAE (O66722) 1-deoxy-D-xylulose 5-phosphate reductoisomerase
(EC 1.1.1.267) (DXP reductoisomerase)
(1-deoxyxylulose-5-phosphate reductoisomerase)
Length = 380
Score = 31.6 bits (70), Expect = 8.9
Identities = 34/139 (24%), Positives = 56/139 (39%), Gaps = 10/139 (7%)
Query: 496 KEKAKSVYLTIFGPLFEDLRGPPKYMLSQISGGSQPSQNDHIIVSDDETEDAEAPFIQKL 555
+E+ K VYLT G F+D S P N ++ D A + K
Sbjct: 154 REEVKHVYLTASGGPFKDKSLEELKTASVEEALRHPRWNMGAKITID-----SATLMNKG 208
Query: 556 FGILRIYFVFLESIRRVSLGILAGVFIHTRSQSSKSPIIIMLSITSFML-----FFMVLK 610
F +L +F+F I + + I F+H + + ++ S T + F +
Sbjct: 209 FEMLEAHFLFDFPIENIKVVIHPQSFVHGILELIDNSFLMHTSQTDMKIPIMHALFYPKR 268
Query: 611 KPFIKKKVQLVEIISLTCE 629
K + KKV L+E+ +T E
Sbjct: 269 KEYPFKKVSLLELSPITFE 287
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,532,664
Number of Sequences: 164201
Number of extensions: 3564573
Number of successful extensions: 11198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11193
Number of HSP's gapped (non-prelim): 14
length of query: 819
length of database: 59,974,054
effective HSP length: 119
effective length of query: 700
effective length of database: 40,434,135
effective search space: 28303894500
effective search space used: 28303894500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 70 (31.6 bits)
Medicago: description of AC124952.8