BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124951.10 - phase: 0 
         (446 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SYLC_NEUCR (P10857) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1....    33  1.1
OTCC_LACSK (O53089) Ornithine carbamoyltransferase, catabolic (E...    32  3.3
GYRA_MYCLE (Q57532) DNA gyrase subunit A (EC 5.99.1.3) [Contains...    32  3.3
SYG_CHLTR (Q46371) Glycyl-tRNA synthetase (EC 6.1.1.14) (GlyRS) ...    32  4.3
HXA1_XENLA (Q08821) Homeobox protein Hox-A1 (Hox.lab2) (Fragment)      31  7.4
SYLC_SCHPO (Q10490) Putative leucyl-tRNA synthetase, cytoplasmic...    30  9.6
FLGH_HELPJ (Q9ZMB3) Flagellar L-ring protein precursor (Basal bo...    30  9.6

>SYLC_NEUCR (P10857) Leucyl-tRNA synthetase, cytoplasmic (EC
           6.1.1.4) (Leucine--tRNA ligase) (LeuRS)
          Length = 1123

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (55%), Gaps = 2/39 (5%)

Query: 237 LMNWSCAMAYGVGSQSPLSPSFNFSLELVKSSQFVASFY 275
           L  W+CA  YG+GS+ P  P  NF +E +  S    ++Y
Sbjct: 608 LKQWACARTYGLGSKLPWDP--NFLVESLSDSTVYMAYY 644


>OTCC_LACSK (O53089) Ornithine carbamoyltransferase, catabolic (EC
           2.1.3.3) (OTCase)
          Length = 337

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 397 PNFVMLTPSKEHLAEGIVWETGKRPMLQSDIDAG 430
           P+ +  T     LAEG   ETG + M+ SD+DAG
Sbjct: 188 PDSLQPTQEVRDLAEGYAKETGSKNMITSDVDAG 221


>GYRA_MYCLE (Q57532) DNA gyrase subunit A (EC 5.99.1.3) [Contains: Mle
            gyrA intein]
          Length = 1273

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 120  LYVSTSDPVLQMRSCAYYPRYGFGAFGVFPLLLKNRTSSQIATFTADKVRQLYRETSQDS 179
            L V+TS    +  S   YP  G G  GV  ++   R  S +     D+  +LY  TS   
Sbjct: 1144 LLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELYAITS-GG 1202

Query: 180  GVMGLR----YGSGNLSCGVTLMPFAKKDEL 206
            GV+         +G  + GV LM   + D L
Sbjct: 1203 GVIRTTARQVRQAGRQTKGVRLMNLGEGDTL 1233


>SYG_CHLTR (Q46371) Glycyl-tRNA synthetase (EC 6.1.1.14) (GlyRS)
           [Includes: Glycyl-tRNA synthetase alpha chain
           (Glycine--tRNA ligase alpha chain); Glycyl-tRNA
           synthetase beta chain (Glycine--tRNA ligase beta chain)]
          Length = 1003

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 38/169 (22%), Positives = 61/169 (35%), Gaps = 34/169 (20%)

Query: 39  MLESSYDVVFGKLALRCLFNDYFQQPKHFVTRIMLKPIDDPHVDLIATVSGPLDQKPDEN 98
           ++ + +D  F  L    L  +  Q  ++F T+ M   I +    LI   + P D   + N
Sbjct: 577 VISAQFDPAFCSLPKELLIAEMIQHQRYFPTQNMQGEITNRF--LIVCDNSPTDSIVEGN 634

Query: 99  --------INGNALFRWQSDVNDPHTFMDLYVSTSDPVLQMRSCAYYPRYGF-------- 142
                    +GN LF+            DL    S  V +++S  Y+   G         
Sbjct: 635 EKALAPRLTDGNFLFK-----------QDLLTPLSSFVEKLKSVTYFESLGSLADKTSRL 683

Query: 143 -----GAFGVFPLLLKNRTSSQIATFTADKVRQLYRETSQDSGVMGLRY 186
                 A+ + PL  K    + I    AD V  +  E  +  G+MG  Y
Sbjct: 684 KLHLEEAYALLPLCAKEDIDTAIHYCKADLVSSVVNEFPELQGIMGRYY 732


>HXA1_XENLA (Q08821) Homeobox protein Hox-A1 (Hox.lab2) (Fragment)
          Length = 240

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 20/80 (25%), Positives = 35/80 (43%)

Query: 241 SCAMAYGVGSQSPLSPSFNFSLELVKSSQFVASFYQHMVVQRRVKNPLEENTVVGITNYI 300
           SC   YG+ + SP    F    E   SS F  S Y   +    V++   ++ + G  +YI
Sbjct: 6   SCGSNYGMQNFSPGYSHFPIHQETEVSSGFPQSVYSGNIASSVVQHQQHQSYIEGSAHYI 65

Query: 301 DFGFELQTSVDDAIAANNIS 320
              +  + ++  A   NN++
Sbjct: 66  HHSYGPEQNLSVANYNNNVA 85


>SYLC_SCHPO (Q10490) Putative leucyl-tRNA synthetase, cytoplasmic
           (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS)
          Length = 1111

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 237 LMNWSCAMAYGVGSQSPLSPSFNFSLELVKSSQFVASFY 275
           L  W+CA +YG+G++ P  P   F +E +  S    ++Y
Sbjct: 592 LSQWACARSYGLGTRLPWDP--QFLVESLTDSTIYMAYY 628


>FLGH_HELPJ (Q9ZMB3) Flagellar L-ring protein precursor (Basal body
           L-ring protein)
          Length = 237

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 4/53 (7%)

Query: 374 GQVQYGFGLQSESLREASYQRADPNFVMLTPSKEHLAE----GIVWETGKRPM 422
           G V +G      S  E +     PN+V  TPSKE + E    G ++  G+RP+
Sbjct: 8   GAVAFGVVFSMASANEPNIDFNPPNYVEETPSKEFIPELNKLGSLFGQGERPL 60


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,391,280
Number of Sequences: 164201
Number of extensions: 2163797
Number of successful extensions: 4784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4779
Number of HSP's gapped (non-prelim): 7
length of query: 446
length of database: 59,974,054
effective HSP length: 113
effective length of query: 333
effective length of database: 41,419,341
effective search space: 13792640553
effective search space used: 13792640553
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)