BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124215.9 - phase: 0
(475 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III) 37 0.15
SYN3_RAT (O70441) Synapsin-3 (Synapsin III) 33 1.6
YS00_ANASP (Q8YTC2) Hypothetical WD-repeat protein alr2800 32 3.6
RPOD_LEPIN (P59117) RNA polymerase sigma factor rpoD 32 3.6
RPOD_LEPIC (P61540) RNA polymerase sigma factor rpoD 32 3.6
IGX1_MOUSE (Q8R0A6) Immunoglobulin-like domain protein MGC33530 ... 32 3.6
YF44_METJA (Q58939) Hypothetical protein MJ1544 32 4.7
MSI2_ARATH (O22468) WD-40 repeat protein MSI2 31 6.1
YBV1_SCHPO (O94643) Hypothetical protein C21.01 in chromosome II 31 8.0
SAPA_HAEIN (P45285) Peptide transport periplasmic protein sapA p... 31 8.0
CDC4_CANAL (P53699) Cell division control protein 4 31 8.0
>SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)
Length = 579
Score = 36.6 bits (83), Expect = 0.15
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 16 ATKGESSNNGSKPNIKINNKNI--IKKLQTREISPKPHRSFVAATSPHRFQNMRLTHQFD 73
A+ G S N SKP+ +++ N ++ T + +P +S A+ PH ++ LT+
Sbjct: 489 ASGGSSPNQASKPSASLSSHNRPPVQGRSTSQQGEEPQKS--ASPHPHLNKSQSLTNSLS 546
Query: 74 THDPKHHSSPS 84
T D H +PS
Sbjct: 547 TSDTSHRGTPS 557
>SYN3_RAT (O70441) Synapsin-3 (Synapsin III)
Length = 579
Score = 33.1 bits (74), Expect = 1.6
Identities = 19/71 (26%), Positives = 35/71 (48%), Gaps = 4/71 (5%)
Query: 16 ATKGESSNNGSKPNIKINN--KNIIKKLQTREISPKPHRSFVAATSPHRFQNMRLTHQFD 73
A+ G S N SKP +++ + ++ T + +P ++ A+ PH ++ LT+
Sbjct: 489 ASGGSSPNQASKPTASLSSHTRPPVQGRSTSQQGEEPQKT--ASPHPHLNKSQSLTNSLS 546
Query: 74 THDPKHHSSPS 84
T D H +PS
Sbjct: 547 TSDTSHRGTPS 557
>YS00_ANASP (Q8YTC2) Hypothetical WD-repeat protein alr2800
Length = 1258
Score = 32.0 bits (71), Expect = 3.6
Identities = 39/196 (19%), Positives = 82/196 (40%), Gaps = 19/196 (9%)
Query: 192 WPGFVEFDDVNAKVLTYSAQDSIYKVFDLKNYTLLYSIS--DRNVQEIKISPGIMLLIFN 249
W FV F + ++L D K++ +++ + +++ + V + P L
Sbjct: 686 WVRFVVFSP-DGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLA-- 742
Query: 250 RASGHIPLKIISIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRSSE 309
ASG +K+ I+DGT L+ + V F N L + +++ DV +
Sbjct: 743 SASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGN-TLASSAADHTIKLWDVSQGK 801
Query: 310 LMEVSRTEFMTPSAFIFLYENQLFLT-FRNRTVSVWNFR-GELVTSFEDHLLWHPDCNTN 367
+ ++ + F + Q + +RT+ +WN+ GE + ++ H TN
Sbjct: 802 CLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGH--------TN 853
Query: 368 NIY---ITSDQDLIIS 380
++Y + D +++S
Sbjct: 854 SVYSIAYSPDSKILVS 869
>RPOD_LEPIN (P59117) RNA polymerase sigma factor rpoD
Length = 585
Score = 32.0 bits (71), Expect = 3.6
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 203 AKVLTYSAQDSIYKVFDLK---------NYTLLYSISDRNVQEIKISPGIMLLIFNRASG 253
+K+ YS YK F K N +S + +Q+I M+
Sbjct: 200 SKIRKYSETSKKYKEFKEKIDASTEIIHNAIRELGVSQKEIQKISQKIKSMVFRIKEIDR 259
Query: 254 H-IPLKIISIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRSSE 309
H + +K +D +KAFN + +N+K+D IE K+ V + I D+R++E
Sbjct: 260 HFLKIKAQYGQDVRDIKAFNRFIEKNEKLDDIE---VKMGVNIDEVREVIKDIRNNE 313
>RPOD_LEPIC (P61540) RNA polymerase sigma factor rpoD
Length = 585
Score = 32.0 bits (71), Expect = 3.6
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 203 AKVLTYSAQDSIYKVFDLK---------NYTLLYSISDRNVQEIKISPGIMLLIFNRASG 253
+K+ YS YK F K N +S + +Q+I M+
Sbjct: 200 SKIRKYSETSKKYKEFKEKIDASTEIIHNAIRELGVSQKEIQKISQKIKSMVFRIKEIDR 259
Query: 254 H-IPLKIISIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRSSE 309
H + +K +D +KAFN + +N+K+D IE K+ V + I D+R++E
Sbjct: 260 HFLKIKAQYGQDVRDIKAFNRFIEKNEKLDDIE---VKMGVNIDEVREVIKDIRNNE 313
>IGX1_MOUSE (Q8R0A6) Immunoglobulin-like domain protein MGC33530
precursor
Length = 235
Score = 32.0 bits (71), Expect = 3.6
Identities = 24/91 (26%), Positives = 41/91 (44%), Gaps = 19/91 (20%)
Query: 3 ERRRGVWSCRRIVATKGESSNNGSKPNIKINNKNIIKKLQTREISP------KPHR--SF 54
++ G++ CR A GE + ++ +K+N + +++Q E SP KP + S
Sbjct: 118 KKDEGLYECRVTDANYGELQEHKAQAYLKVNANSHARRMQAFEASPMWLQDTKPRKNASS 177
Query: 55 VAATSPHRFQNMRLTHQFDTHDPKHHSSPSP 85
V +S H N R+ HS+ SP
Sbjct: 178 VVPSSVHNSANQRM-----------HSTSSP 197
>YF44_METJA (Q58939) Hypothetical protein MJ1544
Length = 441
Score = 31.6 bits (70), Expect = 4.7
Identities = 29/113 (25%), Positives = 57/113 (49%), Gaps = 17/113 (15%)
Query: 185 FQSESLKWPGFVEF---DDVNAKV-LTYSAQDSIYKVFDLKNYTLLYSISDRNVQEIKIS 240
+ +E +K+ GF E DD N K + D I+ ++ +++ RN++EIK+
Sbjct: 196 YLNEFIKFGGFPEITLIDDENIKKEILKEYLDGIFYRDVVERHSI------RNIKEIKVL 249
Query: 241 PGIMLLIFNRASGHIPLKIISIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLV 293
I++ +F + I +K I+ +LK FN + R +++E F++ L+
Sbjct: 250 RNILINLF---ANEISIKKIA----NLLKEFNTKISRECIYNYLEYFSDAYLI 295
>MSI2_ARATH (O22468) WD-40 repeat protein MSI2
Length = 415
Score = 31.2 bits (69), Expect = 6.1
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query: 195 FVEFDDVNAKVLTYSAQDSIYKVFDLKNYTL-LYSIS-----------DRNVQEIKISPG 242
++ F+ N VL ++ DS +FDL+ L+ +S D N + + S G
Sbjct: 265 YLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNHETVLASSG 324
Query: 243 ----IMLLIFNRASGHIPLKI-ISIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQ-- 295
+M+ NR G L+I + EDG F+H H+ K DF NE ++
Sbjct: 325 EDRRLMVWDLNRV-GEEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKNEPWVIASVA 383
Query: 296 ENENLQILDVRSS 308
E+ +LQ+ + S
Sbjct: 384 EDNSLQVWQMAES 396
>YBV1_SCHPO (O94643) Hypothetical protein C21.01 in chromosome II
Length = 441
Score = 30.8 bits (68), Expect = 8.0
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 209 SAQDSIYKVFDLKNYTLLYSISDR-NVQEIKISPGI-----MLLIFNRASGHIPLKIISI 262
S ++ +K+ DL + T ++SISD+ N+ E +IS + + I N +S + + S
Sbjct: 62 SQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSVSSIENVSSSAVARETQS- 120
Query: 263 EDGTVLKAFNHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRSSELMEVS 314
+L NH H+ KK+ + + + +N++ D SS ++E S
Sbjct: 121 -SANILVKDNHFFSHKQKKI------QRESIPFHKRDNIETSDAYSSSILENS 166
>SAPA_HAEIN (P45285) Peptide transport periplasmic protein sapA
precursor
Length = 565
Score = 30.8 bits (68), Expect = 8.0
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 86 FLPFLMKRTKVVEIVAAKNIVFALAHSGL--CA-----AFSRETNERICFLNICPDEVIR 138
FL FL+ + VE+ AA ++ L +GL C +F+ +T + +N+ +++
Sbjct: 8 FLSFLLCIIQSVELQAAPSVPTFLTENGLTYCTHASGFSFNPQTADAGTSMNVVTEQIYN 67
Query: 139 SLFYNKNNDSLITVSVYASENFSS 162
LF KN+ + +T + S + S+
Sbjct: 68 KLFDIKNHSATLTPMLAQSYSISA 91
>CDC4_CANAL (P53699) Cell division control protein 4
Length = 684
Score = 30.8 bits (68), Expect = 8.0
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 276 HRNKKVDFIEQFNEKLLVKQENENLQILDVRSSELMEVSRTEFMTPSAFIFLYE-NQLFL 334
H NK V ++ +EK++ +++ + I ++ +LM+V E + Y N L
Sbjct: 323 HGNKVVTCLQHDDEKVVTGVDDKCISIYSTQTGQLMKV--LEGHEGGVWALKYTGNTLVT 380
Query: 335 TFRNRTVSVWNFR-GELVTSFEDH 357
+RTV VWN + G+ F H
Sbjct: 381 GSTDRTVRVWNMKTGQCTHIFRGH 404
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,930,516
Number of Sequences: 164201
Number of extensions: 2178545
Number of successful extensions: 6055
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6053
Number of HSP's gapped (non-prelim): 12
length of query: 475
length of database: 59,974,054
effective HSP length: 114
effective length of query: 361
effective length of database: 41,255,140
effective search space: 14893105540
effective search space used: 14893105540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC124215.9