BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124214.2 + phase: 0 
         (402 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

LON_HELPY (P55995) ATP-dependent protease La (EC 3.4.21.53)            34  0.58
LON_HELPJ (Q9ZJL3) ATP-dependent protease La (EC 3.4.21.53)            34  0.58
YKY8_SCHPO (O14270) Putative forkhead-related transcription fact...    32  2.9
ENV_RSVP (P03396) Env polyprotein precursor [Contains: Surface p...    30  8.4
CBPD_DROME (P42787) Carboxypeptidase D precursor (EC 3.4.17.-) (...    30  8.4

>LON_HELPY (P55995) ATP-dependent protease La (EC 3.4.21.53)
          Length = 835

 Score = 34.3 bits (77), Expect = 0.58
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 81  NQRQNLSLINSWKWVPRGCDMNRIDPFRFLGSMRNKNVGIVGDSLNENLLVSF 133
           ++   + ++N   W P G D+ +I+  +  G    K  G +GD + E+ +++F
Sbjct: 634 DEENKIGIVNGLAWTPVGGDVLKIEVLKIRGKGELKLTGSLGDVMKESAIIAF 686


>LON_HELPJ (Q9ZJL3) ATP-dependent protease La (EC 3.4.21.53)
          Length = 831

 Score = 34.3 bits (77), Expect = 0.58
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 81  NQRQNLSLINSWKWVPRGCDMNRIDPFRFLGSMRNKNVGIVGDSLNENLLVSF 133
           ++   + ++N   W P G D+ +I+  +  G    K  G +GD + E+ +++F
Sbjct: 630 DEENKIGIVNGLAWTPVGGDVLKIEAVKIRGKGELKLTGSLGDVMKESAIIAF 682


>YKY8_SCHPO (O14270) Putative forkhead-related transcription factor
           C1142.08
          Length = 743

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 21/76 (27%), Positives = 32/76 (41%), Gaps = 8/76 (10%)

Query: 30  LNTLSSSSSTSPSLTISTCNLFKGTWVFDPNHTPLYDDTCPFHRNAWNCIRNQ------- 82
           LN    +   +    +S  NL   T + +PN      D C +  N W+  R+Q       
Sbjct: 279 LNGSPDTGDATQKPNLSYANLIARTLIANPNKKMTLGDICEWIANNWSYYRHQPPAWHNS 338

Query: 83  -RQNLSLINSWKWVPR 97
            R NLSL  ++  +PR
Sbjct: 339 IRHNLSLNKAFIRIPR 354


>ENV_RSVP (P03396) Env polyprotein precursor [Contains: Surface
           protein gp85; Membrane protein gp37]
          Length = 603

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 27/119 (22%), Positives = 49/119 (40%), Gaps = 16/119 (13%)

Query: 25  SSFISLNTLSSSSSTSPSLTISTC---NLFKGT---WVFDPNHTPLYDDTCPFHRNAWNC 78
           S F+  +  +S+S+++   T+ T    NLF G+     +      +Y+  C   RN + C
Sbjct: 215 SRFLLRHPFTSTSNSTEPFTVVTADRHNLFMGSEYCGAYGYRFWEIYN--CSQTRNTYRC 272

Query: 79  IRNQRQNLSLINSWK------WVPRGCDMNRIDPFRFLGSMRNKNVGIVGDSLNENLLV 131
                    L  +W       WV +  ++N  +PF F  +    N+G V     E + +
Sbjct: 273 --GDVGGTGLPETWCRGKGGIWVNQSKEINETEPFSFTANCTGSNLGNVSGCCGEPITI 329


>CBPD_DROME (P42787) Carboxypeptidase D precursor (EC 3.4.17.-)
           (Silver protein)
          Length = 1406

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 14/71 (19%)

Query: 294 GSCLFNKPLEENELDL---WFEPRNNGVNKEARQMNFVIEKVLQGTNIHVVDFTHLSEFR 350
           GS + N P ++NE D    +   RN+ +N   R+ N   +  L         F HL+   
Sbjct: 628 GSLVANYPFDDNENDFNDPFMRLRNSSIN--GRKPNPTEDNAL---------FKHLAGIY 676

Query: 351 ADAHPAIWLGR 361
           ++AHP ++LG+
Sbjct: 677 SNAHPTMYLGQ 687


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.139    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,553,525
Number of Sequences: 164201
Number of extensions: 2358949
Number of successful extensions: 5243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5241
Number of HSP's gapped (non-prelim): 5
length of query: 402
length of database: 59,974,054
effective HSP length: 112
effective length of query: 290
effective length of database: 41,583,542
effective search space: 12059227180
effective search space used: 12059227180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)