BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124214.11 + phase: 0 /pseudo
         (240 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

GLND_RHOPA (P62223) [Protein-PII] uridylyltransferase (EC 2.7.7....    32  1.4
MER1_YEAST (P16523) Meiotic recombination 1 protein                    29  8.8
LEU1_CAMJE (Q9PLV9) 2-isopropylmalate synthase (EC 2.3.3.13) (Al...    29  8.8

>GLND_RHOPA (P62223) [Protein-PII] uridylyltransferase (EC 2.7.7.59)
           (PII uridylyl-transferase) (Uridylyl removing enzyme)
           (UTase)
          Length = 929

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 143 LKESGVRSSASASLLYLPLFLDYKRLPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEK 202
           L E+  R ++S S   L  F+    + EI   + DR  +I V      G++ +    I K
Sbjct: 812 LPEAVARRASSGSKAKLRAFVVEPEV-EINNNWSDRYTVIEVSGLDRPGLLYQLTTAISK 870

Query: 203 LNLKVTNSSFMTFGSCALDI 222
           LNL + ++   TFG  A D+
Sbjct: 871 LNLNIASAHVATFGERARDV 890


>MER1_YEAST (P16523) Meiotic recombination 1 protein
          Length = 270

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 26/88 (29%), Positives = 38/88 (42%), Gaps = 15/88 (17%)

Query: 157 LYLPLFLDYKRLPEIEARFCDRNVLIRVHCEKIKGVVEKTIHKIEKLNLKVTNSSFMTFG 216
           LYL L LDY    +    FC       VH +KIKGV+      I  L L   +   + F 
Sbjct: 40  LYLKLALDYSFFRKNLLEFC-------VHLDKIKGVIRPNYDTIYILCLLEVDLLNLVFT 92

Query: 217 SCALDITI---IAQPTL-----SFYVFH 236
              L+I +   +++  L     +FY +H
Sbjct: 93  DNILEICLPRFVSREDLRVFNNTFYTYH 120


>LEU1_CAMJE (Q9PLV9) 2-isopropylmalate synthase (EC 2.3.3.13)
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 511

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 15/24 (62%), Positives = 16/24 (66%)

Query: 46  LLVTLHNTIHTFIQTSTLELQWKL 69
           L V  H  IHTFI TSTL +Q KL
Sbjct: 89  LKVAKHFRIHTFIATSTLHMQDKL 112


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.364    0.163    0.551 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,028,052
Number of Sequences: 164201
Number of extensions: 629639
Number of successful extensions: 4529
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4526
Number of HSP's gapped (non-prelim): 3
length of query: 240
length of database: 59,974,054
effective HSP length: 107
effective length of query: 133
effective length of database: 42,404,547
effective search space: 5639804751
effective search space used: 5639804751
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 64 (29.3 bits)