BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC123975.11 - phase: 0
(206 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa polyp... 228 1e-59
RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa polype... 223 3e-58
RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa polype... 222 4e-58
RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polyp... 174 1e-43
RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa polyp... 164 1e-40
RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa polyp... 164 1e-40
RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa polyp... 164 2e-40
RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III ... 162 4e-40
RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa polyp... 162 7e-40
RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa polyp... 158 7e-39
RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa polyp... 157 2e-38
RPOH_PYRAB (Q9V116) DNA-directed RNA polymerase subunit H (EC 2.... 80 4e-15
RPOH_PYRHO (O74019) DNA-directed RNA polymerase subunit H (EC 2.... 79 6e-15
RPOH_METTH (O27122) DNA-directed RNA polymerase subunit H (EC 2.... 79 1e-14
RPOH_PYRFU (Q8U0M2) DNA-directed RNA polymerase subunit H (EC 2.... 77 2e-14
RPOH_METJA (Q58443) DNA-directed RNA polymerase subunit H (EC 2.... 71 2e-12
RPOH_THECE (P31815) DNA-directed RNA polymerase subunit H (EC 2.... 70 3e-12
RPOH_ARCFU (O28394) DNA-directed RNA polymerase subunit H (EC 2.... 68 2e-11
RPOH_METMA (Q8PUQ8) DNA-directed RNA polymerase subunit H (EC 2.... 67 2e-11
RPOH_METAC (Q8TRB4) DNA-directed RNA polymerase subunit H (EC 2.... 67 4e-11
>RPB5_CAEEL (Q9N5K2) DNA-directed RNA polymerases II 24 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5)
Length = 211
Score = 228 bits (580), Expect = 1e-59
Identities = 117/211 (55%), Positives = 148/211 (69%), Gaps = 5/211 (2%)
Query: 1 MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMK-----REDLV 55
M E E RL+RIRKTV+QM+ DR YLV EL+ FK +YG+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60
Query: 56 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVS 115
I D P+DQ++VFFPE+AK+G+KT+K +M +N+ RAI+V QT +TP AK +
Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPV 175
++A K+ LE F EAEL+VNI EH LVPEH ++ EK LL RY +K++QLPRIQ DPV
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPV 180
Query: 176 ARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206
ARY+GL+RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 181 ARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211
>RPB5_MOUSE (Q80UW8) DNA-directed RNA polymerase II 23 kDa
polypeptide (EC 2.7.7.6) (RPB25) (RPB5) (RPABC1)
Length = 210
Score = 223 bits (567), Expect = 3e-58
Identities = 111/206 (53%), Positives = 146/206 (69%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +FK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F + ELL+NI EH LVPEH ++ E LL RY ++E+QLPRIQ DPVARY+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209
>RPB5_HUMAN (P19388) DNA-directed RNA polymerase II 23 kDa
polypeptide (EC 2.7.7.6) (RPB25) (RPB5) (RPABC1) (XAP4)
Length = 210
Score = 222 bits (566), Expect = 4e-58
Identities = 111/206 (53%), Positives = 145/206 (69%), Gaps = 5/206 (2%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENM-----KREDLVINKT 59
EEE RL++IRKT+MQ+ DR YLV EL+ + +FK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIAS 119
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP AK + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYY 179
K+ LE F + ELL+NI EH LVPEH ++ E LL RY ++E QLPRIQ DPVARY+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183
Query: 180 GLKRGQVVKIIRPSETAGRYVTYRFV 205
G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209
>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5)
Length = 210
Score = 174 bits (441), Expect = 1e-43
Identities = 92/207 (44%), Positives = 130/207 (62%), Gaps = 4/207 (1%)
Query: 1 MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKY---GENMKREDLVIN 57
M E+ I R++R KT Q++ DR Y V EL+++ FK + G N+ R L
Sbjct: 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFY 60
Query: 58 -KTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSE 116
K D IY+ F +E VG+K M+T+ + + N IL+ S+TP A ++
Sbjct: 61 AKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIAT 120
Query: 117 IASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVA 176
+ +F +E FQE++L+VNI H LVP+H +L+ EKK LL+RY ++ETQLPRIQ+ DPVA
Sbjct: 121 VTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVA 180
Query: 177 RYYGLKRGQVVKIIRPSETAGRYVTYR 203
RY GLKRG+VVKI+R SET+GRY +YR
Sbjct: 181 RYLGLKRGEVVKIVRRSETSGRYNSYR 207
>RPB5_KLULA (Q6CJ62) DNA-directed RNA polymerases II 24 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5)
Length = 215
Score = 164 bits (416), Expect = 1e-40
Identities = 91/208 (43%), Positives = 128/208 (60%), Gaps = 10/208 (4%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDKP 64
E I+RL+R KTV +M++DR Y + E+++S DFK KY ++M + + + +
Sbjct: 6 ERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPT 65
Query: 65 SDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVS 115
+ I +V F +EA VGVKTMK + + +N I + Q+ +TP A +
Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILP 125
Query: 116 EIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPV 175
A +E F EA L+VNI H LVP+H L++ EKK LL+RY +KE+QLPRIQ DPV
Sbjct: 126 TAAPAV-IETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDPV 184
Query: 176 ARYYGLKRGQVVKIIRPSETAGRYVTYR 203
A Y GLKRG+V+KIIR SET+GRY +YR
Sbjct: 185 ALYLGLKRGEVIKIIRKSETSGRYASYR 212
>RPB5_ASHGO (Q757H7) DNA-directed RNA polymerases II 24 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5)
Length = 215
Score = 164 bits (415), Expect = 1e-40
Identities = 91/209 (43%), Positives = 129/209 (61%), Gaps = 10/209 (4%)
Query: 4 SEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVI------- 56
+E ++RL+R +TV +M++DR Y + E+++S DFK KY ++M R +
Sbjct: 5 NERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64
Query: 57 -NKTKKDKPS-DQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCV 114
+T K P+ ++V F +E VG+KTMK + + +N I + Q +TP A +
Sbjct: 65 TEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLL 124
Query: 115 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDP 174
+A +E F E L+VNI H LVP+H L+D EKK LL+RY +KE+QLPRIQ DP
Sbjct: 125 PSVAPAT-IETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRMDP 183
Query: 175 VARYYGLKRGQVVKIIRPSETAGRYVTYR 203
VA Y GLKRG+VVKIIR SET+GRY +YR
Sbjct: 184 VALYLGLKRGEVVKIIRKSETSGRYASYR 212
>RPB5_KLUMA (Q9P4B9) DNA-directed RNA polymerases II 24 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5)
Length = 215
Score = 164 bits (414), Expect = 2e-40
Identities = 91/208 (43%), Positives = 128/208 (60%), Gaps = 10/208 (4%)
Query: 5 EEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDKP 64
E I+RL+R +TV +M++DR Y + E+++S DFK KY ++M + + + +
Sbjct: 6 ERGISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPT 65
Query: 65 SDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVS 115
+ I +V F +EA VGVKTMK + + +N I + Q+ +TP A +
Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILP 125
Query: 116 EIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPV 175
A +E F EA L+VNI H LVP+H L+D EKK LL+RY +KE+QLPRIQ DPV
Sbjct: 126 TAAPAV-IETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQRMDPV 184
Query: 176 ARYYGLKRGQVVKIIRPSETAGRYVTYR 203
A Y GLKRG+V+KIIR SET+GRY +YR
Sbjct: 185 ALYLGLKRGEVIKIIRKSETSGRYASYR 212
>RPB5_YEAST (P20434) DNA-directed RNA polymerases I, II, and III 27
kDa polypeptide (EC 2.7.7.6) (ABC27)
Length = 215
Score = 162 bits (411), Expect = 4e-40
Identities = 93/209 (44%), Positives = 126/209 (59%), Gaps = 10/209 (4%)
Query: 4 SEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDK 63
+E I+RL+R +TV +M+KDR Y + E+ + DFK KY ++M R + + +
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANP 64
Query: 64 PSDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCV 114
+ I +V F +E VGVKTMKT+ + +N I V Q ++TP A V
Sbjct: 65 TEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLV 124
Query: 115 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDP 174
I +E F EA L+VNI H LVP+H L+ EK+ LL+RY +KE+QLPRIQ DP
Sbjct: 125 PSIPPAT-IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADP 183
Query: 175 VARYYGLKRGQVVKIIRPSETAGRYVTYR 203
VA Y GLKRG+VVKIIR SET+GRY +YR
Sbjct: 184 VALYLGLKRGEVVKIIRKSETSGRYASYR 212
>RPB5_CANGA (Q6FQA6) DNA-directed RNA polymerases II 24 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5)
Length = 215
Score = 162 bits (409), Expect = 7e-40
Identities = 91/209 (43%), Positives = 127/209 (60%), Gaps = 10/209 (4%)
Query: 4 SEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDK 63
++ I+RL+R +TV +M++DR Y + EL+++ DFK KY ++M R + + +
Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64
Query: 64 PSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCV 114
+ ++V F +E VGVKTMKT+ + + I + Q ++TP A V
Sbjct: 65 TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124
Query: 115 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDP 174
I +E F EA L+VNI H LVP+H LN+ EK LL+RY +KE+QLPRIQ DP
Sbjct: 125 PSIPPAT-IETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADP 183
Query: 175 VARYYGLKRGQVVKIIRPSETAGRYVTYR 203
VA Y GLKRG+VVKIIR SETAGRY +YR
Sbjct: 184 VALYLGLKRGEVVKIIRKSETAGRYASYR 212
>RPB5_DEBHA (Q6BIJ0) DNA-directed RNA polymerases II 24 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5)
Length = 214
Score = 158 bits (400), Expect = 7e-39
Identities = 88/209 (42%), Positives = 129/209 (61%), Gaps = 10/209 (4%)
Query: 4 SEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMK---------REDL 54
++ I+RL+R KTV +M++DR Y + E++MS +F+ + ++M + +
Sbjct: 4 TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANP 63
Query: 55 VINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCV 114
+K ++V F +EA VG+KTM+ + ++ +N I + Q+S+TP A +
Sbjct: 64 TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLI 123
Query: 115 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDP 174
+ S +E FQE +L+VNI H LVP+H L EKK LLERY +KE+QLPRIQ DP
Sbjct: 124 PTV-SPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQREDP 182
Query: 175 VARYYGLKRGQVVKIIRPSETAGRYVTYR 203
V RY GLKRG+VVKIIR SET+GRY +YR
Sbjct: 183 VGRYLGLKRGEVVKIIRRSETSGRYASYR 211
>RPB5_YARLI (Q6CA26) DNA-directed RNA polymerases II 24 kDa
polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5)
Length = 212
Score = 157 bits (396), Expect = 2e-38
Identities = 89/209 (42%), Positives = 129/209 (61%), Gaps = 10/209 (4%)
Query: 4 SEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFK----DKYGENMKREDLVI--- 56
S ++ +L+++ +T +++KDR Y + D E+N+S F D G+ +K++ +
Sbjct: 2 SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMASP 61
Query: 57 --NKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCV 114
+K I+V F EEA V VKTM+ + ++ ILV + ++TP A +
Sbjct: 62 SPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLI 121
Query: 115 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDP 174
+A ++ FQE +LLVNI +HVLVP H L+ EKK LLERY +KE+QLPRIQ DP
Sbjct: 122 PSVAPAT-IDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQREDP 180
Query: 175 VARYYGLKRGQVVKIIRPSETAGRYVTYR 203
VARY GL+RGQ+VKIIR SET+GRY +YR
Sbjct: 181 VARYLGLRRGQIVKIIRRSETSGRYASYR 209
>RPOH_PYRAB (Q9V116) DNA-directed RNA polymerase subunit H (EC
2.7.7.6)
Length = 82
Score = 79.7 bits (195), Expect = 4e-15
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 134 NIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPS 193
NI +HVLVPEH+IL++ EKK LLE+Y + QLP+I+ +DP + G K G +++I R S
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
Query: 194 ETAGRYVTYRFVV 206
TAG Y YR VV
Sbjct: 68 PTAGVYYYYRVVV 80
>RPOH_PYRHO (O74019) DNA-directed RNA polymerase subunit H (EC
2.7.7.6)
Length = 82
Score = 79.3 bits (194), Expect = 6e-15
Identities = 38/73 (52%), Positives = 51/73 (69%)
Query: 134 NIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPS 193
NI +HVLVPEH+IL++ EKK LLE+Y + QLP+I+ +DP + G K G +++I R S
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEIKRRS 67
Query: 194 ETAGRYVTYRFVV 206
TAG Y YR VV
Sbjct: 68 PTAGVYYYYRVVV 80
>RPOH_METTH (O27122) DNA-directed RNA polymerase subunit H (EC
2.7.7.6) (RPB5)
Length = 77
Score = 78.6 bits (192), Expect = 1e-14
Identities = 39/71 (54%), Positives = 49/71 (68%)
Query: 135 IKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSE 194
I +H LVPEH ILN++E K +L+ QLP+I+ TDPVA+ G KRG +VKIIR S
Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64
Query: 195 TAGRYVTYRFV 205
TA +VTYR V
Sbjct: 65 TAEEFVTYRLV 75
>RPOH_PYRFU (Q8U0M2) DNA-directed RNA polymerase subunit H (EC
2.7.7.6)
Length = 82
Score = 77.4 bits (189), Expect = 2e-14
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 134 NIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPS 193
+I +HVLVPEH++L++ EKK LLE+Y + QLP+I+ +DP + G K G V++I R S
Sbjct: 8 SIFDHVLVPEHRVLSEEEKKALLEKYKITLAQLPQIKASDPAVKALGAKPGDVIEIKRKS 67
Query: 194 ETAGRYVTYRFVV 206
TAG Y YR VV
Sbjct: 68 PTAGVYYYYRVVV 80
>RPOH_METJA (Q58443) DNA-directed RNA polymerase subunit H (EC
2.7.7.6)
Length = 78
Score = 71.2 bits (173), Expect = 2e-12
Identities = 32/74 (43%), Positives = 49/74 (65%)
Query: 133 VNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRP 192
+ + +H+LVP+H+I+ E + +L+RY +K QLP+I DPV + G K G VV++IR
Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 60
Query: 193 SETAGRYVTYRFVV 206
S TAG + YR V+
Sbjct: 61 SPTAGVSIAYRLVI 74
>RPOH_THECE (P31815) DNA-directed RNA polymerase subunit H (EC
2.7.7.6)
Length = 82
Score = 70.5 bits (171), Expect = 3e-12
Identities = 36/73 (49%), Positives = 48/73 (65%)
Query: 134 NIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPS 193
+I H LVPEH+IL++ E K LL RY ++ +QLP+I+ +DP G K G V++I R S
Sbjct: 8 DIFAHELVPEHRILSEEETKELLRRYRIQISQLPQIKASDPAVVALGAKPGDVLEIKRKS 67
Query: 194 ETAGRYVTYRFVV 206
TAG Y YR VV
Sbjct: 68 RTAGYYYYYRLVV 80
>RPOH_ARCFU (O28394) DNA-directed RNA polymerase subunit H (EC
2.7.7.6)
Length = 76
Score = 67.8 bits (164), Expect = 2e-11
Identities = 32/72 (44%), Positives = 49/72 (67%)
Query: 135 IKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSE 194
+++H+LVP+H++L+ E + LL+ + + QLP+I+ DP+A+ G K G +VKI R S
Sbjct: 5 LQDHMLVPKHEVLSKEEAEELLKILGIGKEQLPKIKADDPIAKEIGAKPGDIVKITRKSL 64
Query: 195 TAGRYVTYRFVV 206
TAG V YR VV
Sbjct: 65 TAGESVFYRLVV 76
>RPOH_METMA (Q8PUQ8) DNA-directed RNA polymerase subunit H (EC
2.7.7.6)
Length = 78
Score = 67.4 bits (163), Expect = 2e-11
Identities = 31/73 (42%), Positives = 50/73 (68%)
Query: 134 NIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPS 193
++ +H VP+H+I+++ E K++L +Y +++ QLP+I+V DPV + G G VVKI R S
Sbjct: 5 SLLDHEAVPKHEIMSEGELKSVLSKYFIEKEQLPKIKVQDPVCKEIGAVVGDVVKITRKS 64
Query: 194 ETAGRYVTYRFVV 206
+TAG YR V+
Sbjct: 65 QTAGEADYYRLVI 77
>RPOH_METAC (Q8TRB4) DNA-directed RNA polymerase subunit H (EC
2.7.7.6)
Length = 78
Score = 66.6 bits (161), Expect = 4e-11
Identities = 30/73 (41%), Positives = 51/73 (69%)
Query: 134 NIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPS 193
++ +H VP+H+I+++ E K++L +Y +++ QLP+I+V DPV++ G G VV+I R S
Sbjct: 5 SLLDHESVPKHEIISEGELKSVLSKYLIEKEQLPKIKVQDPVSKEIGAVVGDVVRITRKS 64
Query: 194 ETAGRYVTYRFVV 206
+TAG YR V+
Sbjct: 65 QTAGEADYYRLVI 77
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.135 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,895,442
Number of Sequences: 164201
Number of extensions: 919569
Number of successful extensions: 2630
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2571
Number of HSP's gapped (non-prelim): 47
length of query: 206
length of database: 59,974,054
effective HSP length: 105
effective length of query: 101
effective length of database: 42,732,949
effective search space: 4316027849
effective search space used: 4316027849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC123975.11