BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC123575.7 - phase: 0 /pseudo
         (378 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...    76  1e-13
CHL1_BRALA (Q95000) Cholinesterase 1 (EC 3.1.1.8) (Fragment)           32  3.5
CNDX_MOUSE (Q8BGQ1) Protein C14orf133 homolog                          31  5.9
CNDX_HUMAN (Q9H9C1) Protein C14orf133                                  31  5.9

>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 39/110 (35%), Positives = 64/110 (57%)

Query: 5   KWNIEKFTGSNDFGLWKVKMRIILIQQKCVEALKGKAQMPAHLTPAEKTEMNDKAISAIV 64
           K+ + KF G N F  W+ +MR +LIQQ   + L   ++ P  +   +  +++++A SAI 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 65  LCLGDKVLREVARETIVVSMWNKLDSLYMTKSWTHRQCLKQQLYFYRMVE 114
           L L D V+  +  E     +W +L+SLYM+K+ T++  LK+QLY   M E
Sbjct: 65  LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSE 114


>CHL1_BRALA (Q95000) Cholinesterase 1 (EC 3.1.1.8) (Fragment)
          Length = 357

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 8/57 (14%)

Query: 41  AQMPAHLTPAEKTEMNDKAISAIVLCLGDK--------VLREVARETIVVSMWNKLD 89
           A  P  +TP+E+     KA++  + C  D+         LREV+ +TI+   WN +D
Sbjct: 141 ALAPWAVTPSEQARQRSKALAIDIGCSADEEDMDVLVACLREVSAQTILDHEWNVVD 197


>CNDX_MOUSE (Q8BGQ1) Protein C14orf133 homolog
          Length = 491

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 85  WNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKTNNEATDGIQ*DY 129
           WN +D+L+ TK+W      +  + F+R+VE    N A   I  +Y
Sbjct: 381 WNDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNSAPVQILQEY 425


>CNDX_HUMAN (Q9H9C1) Protein C14orf133
          Length = 493

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 85  WNKLDSLYMTKSWTHRQCLKQQLYFYRMVESKTNNEATDGIQ*DY 129
           WN +D+L+ TK+W      +  + F+R+VE    N A   I  +Y
Sbjct: 383 WNDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNNAPVQILQEY 427


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.356    0.157    0.537 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,239,798
Number of Sequences: 164201
Number of extensions: 1113354
Number of successful extensions: 4620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4615
Number of HSP's gapped (non-prelim): 5
length of query: 378
length of database: 59,974,054
effective HSP length: 112
effective length of query: 266
effective length of database: 41,583,542
effective search space: 11061222172
effective search space used: 11061222172
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 67 (30.4 bits)