BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122730.8 + phase: 0 /pseudo
(739 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
A3D1_HUMAN (O14617) Adapter-related protein complex 3 delta 1 su... 40 0.017
RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes as... 40 0.029
BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 ... 39 0.038
FYB_HUMAN (O15117) FYN-binding protein (FYN-T-binding protein) (... 39 0.065
PCLO_RAT (Q9JKS6) Piccolo protein (Multidomain presynaptic cytom... 38 0.084
PCLO_MOUSE (Q9QYX7) Piccolo protein (Presynaptic cytomatrix prot... 38 0.084
L100_ADEP3 (Q9YTR7) Late 100 kDa protein 38 0.084
EP40_MOUSE (Q8CHI8) E1A binding protein p400 (EC 3.6.1.-) (p400 ... 38 0.084
DIA3_HUMAN (Q9NSV4) Diaphanous protein homolog 3 (Diaphanous-rel... 38 0.084
EP40_HUMAN (Q96L91) E1A binding protein p400 (EC 3.6.1.-) (p400 ... 38 0.11
PO62_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2 37 0.25
FYB_MOUSE (O35601) FYN-binding protein (FYN-T-binding protein) (... 37 0.25
EXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precur... 37 0.25
PCS1_MOUSE (Q8K212) Phosphofurin acidic cluster sorting protein ... 36 0.32
SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor 36 0.42
GP38_MOUSE (Q62011) Glycoprotein 38 precursor (GP38) (OTS-8) 36 0.42
ERF_HUMAN (P50548) ETS-domain transcription factor ERF (Ets2 rep... 36 0.42
SEPL_HUMAN (Q14242) P-selectin glycoprotein ligand 1 precursor (... 35 0.55
MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia p... 35 0.55
GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4) (End... 35 0.55
>A3D1_HUMAN (O14617) Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) (AP-3 complex delta subunit)
(Delta-adaptin)
Length = 1153
Score = 40.4 bits (93), Expect = 0.017
Identities = 30/147 (20%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 580 KSQDIDVDQYVSDCFRKERYEICYSHIIYPVNGQSLWRRTEYTDLQPPPIKRQPGRPKKN 639
++ DID+D+ ++D + P+ ++ + P ++++ +PKK
Sbjct: 800 RALDIDLDKPLADSEK------------LPIQKHRNTETSKSPEKDVPMVEKKSKKPKKK 847
Query: 640 RRKDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLPPPPPQPEPGTQPPATQFPTSQ 699
+K +++RD+++ KK K K + K + H K K + + QPP ++ +
Sbjct: 848 EKKHKEKERDKEK-KKEKEKKKSPKPKKKKHRKE--KEERTKGKKKSKKQPPGSEEAAGE 904
Query: 700 PTSDHAPTTQVSATQASASQVSTTQFV 726
P + AP + ++S S ++ +V
Sbjct: 905 PVQNGAPEEEQLPPESSYSLLAENSYV 931
>RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes
assembly protein RCA1 (EC 3.4.24.-) (TAT-binding homolog
12)
Length = 825
Score = 39.7 bits (91), Expect = 0.029
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 581 SQDIDVDQYVSDCFRK--ERYEICYSHIIYPVNGQSLWRRTEYT--DLQPPPIKRQPGRP 636
+++I D+ V + RK E+Y + P N + R+ + + L+ +K++ R
Sbjct: 61 NKEIPTDEEV-EAIRKQVEKYIEQTKNNTIPANWKEQKRKIDESIRRLEDAVLKQESNRI 119
Query: 637 KKNRRKDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLPPPPPQPEPGTQPPATQFP 696
++ R+ EK +E KAK + EG+N PPPPP P+P P
Sbjct: 120 QEERK----EKEEENGPSKAKSNRTKEQGYFEGNNSRNIPPPPPPPPPKPPLNDP----- 170
Query: 697 TSQPTSDHAPTTQVSAT 713
S P S + Q+ T
Sbjct: 171 -SNPVSKNVNLFQIGLT 186
>BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1
(BBC1 protein)
Length = 1157
Score = 39.3 bits (90), Expect = 0.038
Identities = 28/86 (32%), Positives = 38/86 (43%), Gaps = 16/86 (18%)
Query: 666 KAEGHNKSTCKLPP-----------PPPQPEPGTQPPATQFPTSQPTSDH-----APTTQ 709
+ E H KS+ LPP PP P PPAT S+PT+ H +P
Sbjct: 772 EVEEHVKSSAPLPPVSEEYHPMPNTAPPLPRAPPVPPATFEFDSEPTATHSHTAPSPPPH 831
Query: 710 VSATQASASQVSTTQFVAAKVSSGTQ 735
+ T ++ S +ST Q V V SG +
Sbjct: 832 QNVTASTPSMMSTQQRVPTSVLSGAE 857
>FYB_HUMAN (O15117) FYN-binding protein (FYN-T-binding protein)
(FYB-120/130) (p120/p130) (SLP-76 associated
phosphoprotein) (SLAP-130)
Length = 783
Score = 38.5 bits (88), Expect = 0.065
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 626 PPPIKRQPGRPKKNRRKDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLPPPPPQPE 685
PP P PK NR +VD + K G S+ + + ST LPPPPP
Sbjct: 348 PPLFTLGPPPPKPNRPPNVDLTK----FHKTSSGNSTSKGQT---SYSTTSLPPPPPS-H 399
Query: 686 PGTQPPATQFPTSQPTSDHAPT 707
P +QPP P S P+ P+
Sbjct: 400 PASQPP---LPASHPSQPPVPS 418
>PCLO_RAT (Q9JKS6) Piccolo protein (Multidomain presynaptic cytomatrix
protein)
Length = 5085
Score = 38.1 bits (87), Expect = 0.084
Identities = 24/63 (38%), Positives = 29/63 (45%), Gaps = 3/63 (4%)
Query: 678 PPPPPQPEPGT-QPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQFVAAKVSSGTQS 736
PPPPP P P T PP T P P + P T A A+ V++T V V + T
Sbjct: 2354 PPPPPPPSPSTSSPPPT--PPLPPATSPKPPTYPKKKLAVAATVTSTTIVTTHVDALTMV 2411
Query: 737 VAA 739
AA
Sbjct: 2412 EAA 2414
Score = 36.2 bits (82), Expect = 0.32
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 625 QPPPIKRQPGRP---KKNRRKDVDEKRDEQQLKKAK-YGMKCSRCKAEGHNKSTCKLPPP 680
QP P K P +P K ++ V K QQ AK + + K + + K P
Sbjct: 389 QPGPTKPSPQQPIPAKPQPQQPVATKTQPQQSAPAKPQPQQPAPAKPQPQQPTPAKPQPQ 448
Query: 681 PPQP-EPGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVST 722
PP P +P QPP P QP + P Q ++Q T
Sbjct: 449 PPTPAKPQPQPPTATKPQPQPPTATKPHHQQPGLAKPSAQQPT 491
>PCLO_MOUSE (Q9QYX7) Piccolo protein (Presynaptic cytomatrix protein)
(Aczonin) (Brain-derived HLMN protein)
Length = 5038
Score = 38.1 bits (87), Expect = 0.084
Identities = 19/51 (37%), Positives = 23/51 (44%)
Query: 678 PPPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQFVAA 728
PPPPP P P PP P P + P T A+A+ V+ T V A
Sbjct: 2307 PPPPPPPPPPPPPPPPPPPPLPPATSPKPPTYPKRKLAAAAPVAPTAIVTA 2357
Score = 35.8 bits (81), Expect = 0.42
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 678 PPPPPQPEPGTQPPATQFPTSQP---TSDHAPTTQVSATQASASQVSTTQFVAAKVSSG 733
PPPPP P P P + P + P + AP + A A + T + AA+ S+G
Sbjct: 2317 PPPPPPPPPPLPPATSPKPPTYPKRKLAAAAPVAPTAIVTAHADAIPTVEATAARRSNG 2375
>L100_ADEP3 (Q9YTR7) Late 100 kDa protein
Length = 838
Score = 38.1 bits (87), Expect = 0.084
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 678 PPPPPQPEPGTQPPATQFPTSQPT-SDHAPTTQVSATQASAS 718
PPPPP P P + PP+ Q +PT +D A T S++ +SAS
Sbjct: 21 PPPPPPPPPTSPPPSLQQRQQEPTETDDAEDTCSSSSSSSAS 62
>EP40_MOUSE (Q8CHI8) E1A binding protein p400 (EC 3.6.1.-) (p400 kDa
SWI2/SNF2-related protein) (Domino homolog) (mDomino)
Length = 3072
Score = 38.1 bits (87), Expect = 0.084
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 34/119 (28%)
Query: 625 QPPPIKRQPGRPKKNRRKDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLPPPPPQ- 683
Q PP+ + P + ++ +++ +++ +QQ PPPPPQ
Sbjct: 2452 QQPPVTQPPPQQQQQQQQQQQQQQQQQQ-------------------------PPPPPQQ 2486
Query: 684 ---PEPGTQPPATQFPTSQPTSDHAPTTQVSA-----TQASASQVSTTQFVAAKVSSGT 734
P P Q ++Q P QP P QV A S Q + T +A V +GT
Sbjct: 2487 PPPPVPQPQAASSQTPAGQPAVQPQPQPQVQAQPQPVQPQSKGQPTMTTVGSAAVLAGT 2545
>DIA3_HUMAN (Q9NSV4) Diaphanous protein homolog 3
(Diaphanous-related formin 3) (DRF3) (Fragment)
Length = 853
Score = 38.1 bits (87), Expect = 0.084
Identities = 34/132 (25%), Positives = 53/132 (39%), Gaps = 27/132 (20%)
Query: 580 KSQDIDVDQYVSDCFRKERYEICYSHIIYPVNGQSLWRR--TEYTDLQPPPIKRQPGRPK 637
K D+D+ Q+V C + + E + L+++ E+TD Q + Q K
Sbjct: 226 KRLDLDLTQFVDICIDQAKLEE------FEEKASELYKKFEKEFTDHQETQAELQKKEAK 279
Query: 638 KNRRKDVDEKRDEQQLKKAKYGMKCSRCK---------AEGHNKSTCKLPPPPPQPEPGT 688
++E + E Q K+++G + C GH+ LPPPPP P G
Sbjct: 280 ------INELQAELQAFKSQFGALPADCNIPLPPSKEGGTGHSA----LPPPPPLPSGGG 329
Query: 689 QPPATQFPTSQP 700
PP P P
Sbjct: 330 VPPPPPPPPPPP 341
>EP40_HUMAN (Q96L91) E1A binding protein p400 (EC 3.6.1.-) (p400 kDa
SWI2/SNF2-related protein) (Domino homolog) (hDomino)
(CAG repeat protein 32) (Trinucleotide repeat-containing
gene 12 protein)
Length = 3160
Score = 37.7 bits (86), Expect = 0.11
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 678 PPPPPQPE-PGTQPPATQFPTSQPTSDHAPTTQVSATQASA-SQVSTTQFVAAKVSSGT 734
PPP PQP+ G+QPPA P QP P TQ QA A +Q + T +A V +GT
Sbjct: 2558 PPPLPQPQAAGSQPPAGP-PAVQPQPQPQPQTQPQPVQAPAKAQPAITTGGSAAVLAGT 2615
Score = 33.9 bits (76), Expect = 1.6
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 672 KSTCKLPPPPPQPEPGTQPPA----TQFPTSQPTSDHAP-TTQVSATQASASQVSTT 723
K ++PP PP P+ + PP Q TSQP +P T V+A + A TT
Sbjct: 2823 KQKLQMPPQPPPPQAQSAPPQPAAQVQVQTSQPPQQQSPQLTTVTAPRPGALLTGTT 2879
>PO62_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2
Length = 691
Score = 36.6 bits (83), Expect = 0.25
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 651 QQLKKAKYGMKCSRCKAEGHNKSTCKLPPPPP---QPEPGTQPPATQFPTSQPTSDHAP- 706
QQL++ + + + + + + + PPPPP P+P +Q P P SQPT H P
Sbjct: 172 QQLQQLQLQQQQQQQQQQQQQQQQQQQPPPPPTSQHPQPASQAP----PQSQPTPPHQPP 227
Query: 707 --TTQVSATQASASQVSTTQ 724
+ Q+ A A Q + Q
Sbjct: 228 PASQQLPAPPAQLEQATQPQ 247
>FYB_MOUSE (O35601) FYN-binding protein (FYN-T-binding protein)
(FYB-120/130) (p120/p130) (SLP-76 associated
phosphoprotein) (SLAP-130)
Length = 819
Score = 36.6 bits (83), Expect = 0.25
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 626 PPPIKRQPGRPKKNRRKDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLPPPPPQPE 685
PP P PK NR +VD R +KA ++ + ST LPPPPP
Sbjct: 336 PPLSVLGPPPPKPNRPPNVDLTR----FRKADSANSATKSQTP---YSTTSLPPPPPT-H 387
Query: 686 PGTQPPATQFPTSQPTSDHAPT 707
P +QPP P S P P+
Sbjct: 388 PASQPP---LPASHPAHPPVPS 406
>EXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor
(PELP)
Length = 426
Score = 36.6 bits (83), Expect = 0.25
Identities = 26/78 (33%), Positives = 32/78 (40%), Gaps = 4/78 (5%)
Query: 624 LQPPPIKRQPGRPKKNRRKDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLPPPPPQ 683
++PPP P P K D K+ Q + + + S K PPPPP
Sbjct: 146 VKPPP---PPPSPCKPSPPDQSAKQPPQPPPAKQPSPPPPPPPVKAPSPSPAKQPPPPPP 202
Query: 684 PEPGTQP-PATQFPTSQP 700
P P PATQ PT QP
Sbjct: 203 PVKAPSPSPATQPPTKQP 220
Score = 32.0 bits (71), Expect = 6.0
Identities = 16/46 (34%), Positives = 21/46 (44%), Gaps = 2/46 (4%)
Query: 663 SRCKAEGHNKSTCKLPPPPP--QPEPGTQPPATQFPTSQPTSDHAP 706
S CK ++S + P PPP QP P PP + P+ P P
Sbjct: 154 SPCKPSPPDQSAKQPPQPPPAKQPSPPPPPPPVKAPSPSPAKQPPP 199
>PCS1_MOUSE (Q8K212) Phosphofurin acidic cluster sorting protein 1
(PACS-1)
Length = 961
Score = 36.2 bits (82), Expect = 0.32
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 682 PQPEPGTQPPATQFPT----SQPTSDHAPTTQVSATQASASQVSTTQFVAAKVSSGT 734
PQ +P QPP Q PT +Q TS + T SA AS+S ST+ +A V+SG+
Sbjct: 29 PQQQPQQQPPQPQQPTPPKLAQATSSSSST---SAAAASSSSSSTSTSMAVAVASGS 82
>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor
Length = 307
Score = 35.8 bits (81), Expect = 0.42
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 681 PPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQFVAAKVSS 732
PP + TQPP T TS+PT+ TTQ+ T + ++ +TT+ K ++
Sbjct: 57 PPTQQSTTQPPCT---TSKPTTPKQTTTQLPCTTPTTTKATTTKPTTTKATT 105
Score = 33.1 bits (74), Expect = 2.7
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 674 TCKLPPPPPQPE---PGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQ 724
T P P Q P T P T+ T++PT+ A TT+ + T+ + ++ +TTQ
Sbjct: 69 TTSKPTTPKQTTTQLPCTTPTTTKATTTKPTTTKATTTKATTTKPTTTKQTTTQ 122
Score = 31.6 bits (70), Expect = 7.9
Identities = 26/119 (21%), Positives = 49/119 (40%), Gaps = 8/119 (6%)
Query: 619 TEYTDLQPPPIKRQPGRPKKNRRK------DVDEKRDEQQLKKAKYGMKCSRCKAEGHNK 672
T+ + QPP +P PK+ + + + K + K +
Sbjct: 59 TQQSTTQPPCTTSKPTTPKQTTTQLPCTTPTTTKATTTKPTTTKATTTKATTTKPTTTKQ 118
Query: 673 STCKLP--PPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQFVAAK 729
+T +LP P + TQ P T T++PT+ TT+ + T+ + ++ +TT+ K
Sbjct: 119 TTTQLPCTTPTTTKQTTTQLPCTTPTTTKPTTTKPTTTKPTTTKPTTTKPTTTKPTTTK 177
>GP38_MOUSE (Q62011) Glycoprotein 38 precursor (GP38) (OTS-8)
Length = 172
Score = 35.8 bits (81), Expect = 0.42
Identities = 26/63 (41%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 669 GHNKSTCKLPPPPPQPEPGTQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQFVAA 728
G N+ST K P P Q E GT+PP + TS TSDH S T +V T+ V
Sbjct: 58 GLNESTGKAPLVPTQRERGTKPPLEELSTS-ATSDHDHREHESTTTV---KVVTSHSVDK 113
Query: 729 KVS 731
K S
Sbjct: 114 KTS 116
>ERF_HUMAN (P50548) ETS-domain transcription factor ERF (Ets2
repressor factor)
Length = 548
Score = 35.8 bits (81), Expect = 0.42
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 626 PPPIKRQPGRPKKNRRKDVDEKRDEQQLKKAKYGMKCSRCKAEGHNKSTCKLPPPPPQPE 685
PP IK +P ++ +V + DE + +G T + PP PP+PE
Sbjct: 422 PPQIKVEPISEGESEEVEVTDISDEDE--------------EDGEVFKTPRAPPAPPKPE 467
Query: 686 PGTQPPATQ 694
PG P A+Q
Sbjct: 468 PGEAPGASQ 476
>SEPL_HUMAN (Q14242) P-selectin glycoprotein ligand 1 precursor
(PSGL-1) (Selectin P ligand) (CD162 antigen)
Length = 412
Score = 35.4 bits (80), Expect = 0.55
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 688 TQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQ 724
TQP AT+ T+QP A TT ++AT+A ++++ T+
Sbjct: 124 TQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATE 160
Score = 33.5 bits (75), Expect = 2.1
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 688 TQPPATQFPTSQPTSDHAPTTQVSATQASASQVSTTQ 724
T P AT+ T+QPT+ A TT ++A +A +++ S T+
Sbjct: 234 TAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATE 270
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia
protein 4 (Trithorax homolog 2)
Length = 2715
Score = 35.4 bits (80), Expect = 0.55
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 632 QPGRP--KKNRRK--DVDEKRDEQQLKKAKYGMKCSRCKAE----GHNKSTCKLPPPP-- 681
Q G P KK +K D +E++ E++ K + K R AE K KLPPPP
Sbjct: 348 QGGSPCWKKQEQKLDDEEEEKKEEEEKDKEGEEKEERAVAEEMMPAAEKEEAKLPPPPLT 407
Query: 682 --------PQPEPGTQPPATQFPTSQPTSDHAP 706
P P P T PP P P P
Sbjct: 408 PPAPSPPPPLPPPSTSPPPPLCPPPPPPVSPPP 440
Score = 32.7 bits (73), Expect = 3.5
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 674 TCKLPPPPPQPEPGTQPPATQFPTSQPTSDHAP 706
T +LPPPPP P P PPA P + TS P
Sbjct: 615 TRELPPPPPAPPP---PPAPSPPPAPATSSRRP 644
>GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4)
(Endo-1,4-beta-glucanase E1) (Cellulase E1)
(Endocellulase E1)
Length = 562
Score = 35.4 bits (80), Expect = 0.55
Identities = 28/97 (28%), Positives = 39/97 (39%), Gaps = 6/97 (6%)
Query: 647 KRDEQQLKKAKYG----MKCSRCKAEGHNKSTCKLPPPPPQPEPGTQPPATQFPTSQPTS 702
K D Q + K G +K S G + S P P P P P A++ PT PT
Sbjct: 374 KDDWQTVDTVKDGYLAPIKSSIFDPVGASASPSSQPSPSVSPSPSPSPSASRTPTPTPTP 433
Query: 703 DHAPTTQVSATQASASQVSTTQFVAAKVSSGTQSVAA 739
+PT ++ T S T A +SG + A+
Sbjct: 434 TASPTPTLTPTATPTPTASPTPSPTA--ASGARCTAS 468
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.342 0.148 0.499
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,791,725
Number of Sequences: 164201
Number of extensions: 3246904
Number of successful extensions: 28506
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 26180
Number of HSP's gapped (non-prelim): 1322
length of query: 739
length of database: 59,974,054
effective HSP length: 118
effective length of query: 621
effective length of database: 40,598,336
effective search space: 25211566656
effective search space used: 25211566656
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 70 (31.6 bits)
Medicago: description of AC122730.8