BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122729.3 + phase: 0 
         (404 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

R8L2_ARATH (Q9MAG6) Probable disease resistance RPP8-like protein 2    41  0.005
NEBU_HUMAN (P20929) Nebulin                                            33  1.7
CIN5_RAT (P15389) Sodium channel protein type V alpha subunit (V...    32  2.2
BXD_CLOBO (P19321) Botulinum neurotoxin type D precursor (EC 3.4...    32  2.2
VP3_ROTS1 (P15736) Inner core protein VP3                              32  3.8
RS8E_METMA (Q8PVC6) 30S ribosomal protein S8e                          31  4.9
CYOA_BUCAI (P57544) Ubiquinol oxidase polypeptide II precursor (...    31  6.4
CTR9_YEAST (P89105) CTR9 protein                                       30  8.4

>R8L2_ARATH (Q9MAG6) Probable disease resistance RPP8-like protein 2
          Length = 1271

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 68/300 (22%), Positives = 119/300 (39%), Gaps = 48/300 (16%)

Query: 43   EILYRL-PVKSLLVLKCVSKSLNSLISDPKFVKHHLHLSQTRPYHL--LIRNSELLLVDS 99
            +I++ L P KS+   +CVS+S++     P   +  L  S +RP  L  L  N +LL   S
Sbjct: 913  DIIFELVPAKSIARFRCVSESIH---RRPDVTEQSLTKSMSRPRLLFALEVNKDLLFFSS 969

Query: 100  RLPSVTAIIPDTTHNFRLNPSDNH--------------PIMIDSCDGIICFENRNDNHVD 145
              P               NP DN               P  I +  G + F  +      
Sbjct: 970  PQPQ--------------NPYDNSSLVATPYKRFPKYLPTRICTTLGGLVFLQKWLRKKT 1015

Query: 146  LVVWNPCTGKFKILPPLENIPNGKTHTLYSIGYDRFVDNYKVVAFSCHRQINKSYKYCNS 205
             V+ NP +G +  LP ++    G+++     G+D     +KV+  +  R    +      
Sbjct: 1016 RVICNPVSGDYITLPKVKATGVGESY----FGFDPITKQFKVLCMTWSRYGTPN----TH 1067

Query: 206  QVRVHTLGTNFWRRIPNFPSNIMGLPNGYVGKFVSGTINWAIENQKNYDSWVILSLDLGN 265
            QV     G   WR I +    I+     +    ++G + +  + +++  S  I+  D   
Sbjct: 1068 QVLTLETGKRLWRTIQD---PILPHYRSFDRICINGVLYYGADFEESQSS-KIVCFDFRF 1123

Query: 266  ESYQEISRPDFGLDDPVHIFTLGVSKDCLCVLVYTET-LLGIWVMKDYGNKNSWTKLFAV 324
            E +  I+  D G+    + +TL   K  L    Y+    L +WV++D  N + W+K   +
Sbjct: 1124 EKFSFINIADEGMFRGSYKWTLFNYKGKLGAHQYSRNGELVLWVLEDAEN-HKWSKSICI 1182


>NEBU_HUMAN (P20929) Nebulin
          Length = 6669

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 115  FRLNPSD-NHPIMIDSCDGIICFENRN--DNHVDLVVWNPCTGKFKILPPLENIPNGKTH 171
            +R +PS+     + DS D ++  +N +  + H+  + WN    K  ++P   +I   K +
Sbjct: 2204 YRQHPSNFQFKKLTDSMDMVLAKQNAHTMNKHLYTIDWNKDKTKIHVMPDTPDILQAKQN 2263

Query: 172  -TLYSI-------------GYDRFVDNYKVVAFSCHRQINKSYKY 202
             TLYS              GYD  VD   V      R I   YKY
Sbjct: 2264 QTLYSQKLYKLGWEEALKKGYDLPVDAISVQLAKASRDIASDYKY 2308


>CIN5_RAT (P15389) Sodium channel protein type V alpha subunit
            (Voltage-gated sodium channel alpha subunit Nav1.5)
            (Sodium channel protein, cardiac muscle alpha-subunit)
          Length = 2019

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 274  PDFGLD--DPVHIFTLGVSKDCLCVLVYTETLLG-IW--VMKDYGN--KNSWTKLFAVPY 326
            PD G D  DP   FT G  + C C +V T    G +W  + K      ++SW + F +  
Sbjct: 1157 PDLGEDVKDPEDCFTEGCVRRCPCCMVDTTQSPGKVWWRLRKTCYRIVEHSWFETFIIFM 1216

Query: 327  AKVGYHGFGFVDLHYISEEDDQVFLHFCSKVYVY 360
              +      F D++    +  +V L +  K++ Y
Sbjct: 1217 ILLSSGALAFEDIYLEERKTIKVLLEYADKMFTY 1250


>BXD_CLOBO (P19321) Botulinum neurotoxin type D precursor (EC
            3.4.24.69) (BoNT/D) (Bontoxilysin D)
          Length = 1276

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 41/205 (20%), Positives = 86/205 (41%), Gaps = 22/205 (10%)

Query: 194  RQINKSYK---YCNSQVRVHTLGTNFWRRIPNFPSNIMGLPNGYVGKFVSGTINWAIENQ 250
            + +N+ YK   +  S+   HT  TN W  +    +NIMG    Y+   +  +      ++
Sbjct: 976  QDVNRKYKSLIFDYSESLSHTGYTNKWFFV-TITNNIMGYMKLYINGELKQSQKIEDLDE 1034

Query: 251  KNYDSWVILSLDLGNESYQEISRPDFGLDDPVHIFTLGVSKDCLCVLVYTETLLGIWVMK 310
               D  ++  +D   +  Q +   DF      +IF+  +S + + ++   + L    V+K
Sbjct: 1035 VKLDKTIVFGIDENIDENQMLWIRDF------NIFSKELSNEDINIVYEGQILRN--VIK 1086

Query: 311  DY-GNKNSW-TKLFAVPYAKVGYHGFGFVDLHYISEEDDQVFLHFCSKVYVYNYKNSTVK 368
            DY GN   + T+ + +           ++D +   E +  V + +  +  +Y     T+K
Sbjct: 1087 DYWGNPLKFDTEYYII--------NDNYIDRYIAPESNVLVLVQYPDRSKLYTGNPITIK 1138

Query: 369  TLDIQGQPSILYNSSRVYFESLYDS 393
            ++  +   S + N   +    LY+S
Sbjct: 1139 SVSDKNPYSRILNGDNIILHMLYNS 1163


>VP3_ROTS1 (P15736) Inner core protein VP3
          Length = 835

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 29/132 (21%), Positives = 54/132 (39%), Gaps = 17/132 (12%)

Query: 149 WNPCTGKFKILPPLENIPNGKTHTLYSIGYDRFVDNYKVVAFSCHRQINKSYKYCNSQVR 208
           ++ C G F +   L + P G  H     G D++   YK+  F+ H  I++     + Q+R
Sbjct: 525 YDGCLGLFGLSISLASKPTGNNHLFILSGTDKY---YKLDQFANHTSISRR----SHQIR 577

Query: 209 VHTLGTNF----WRRIPNFPSNIMG--LPNGYVGKFVSGTINWAIENQKNYDSWVIL--- 259
                T++    +R + N   N++G  + N   G   +  I +      +   W+ L   
Sbjct: 578 FSESATSYSGYIFRDLSNNNFNLIGTNIENSVSGHIYNALIYYRYNYSFDLKRWIYLHSI 637

Query: 260 -SLDLGNESYQE 270
             +D+    Y E
Sbjct: 638 DKVDIEGGKYYE 649


>RS8E_METMA (Q8PVC6) 30S ribosomal protein S8e
          Length = 125

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 2/44 (4%)

Query: 209 VHTLGTNFWRRIPNFPSNIMGLPNGYVGKFVSGTINWAIENQKN 252
           VHT+G N  R++    SN+  + N   GK V+ TI   I+N  N
Sbjct: 44  VHTMGGN--RKVRLLQSNVANITNPKDGKTVTATIETVIDNTAN 85


>CYOA_BUCAI (P57544) Ubiquinol oxidase polypeptide II precursor (EC
           1.10.3.-) (Cytochrome o subunit 2) (Oxidase BO(3)
           subunit 2) (Cytochrome o ubiquinol oxidase subunit 2)
          Length = 296

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 2/59 (3%)

Query: 332 HGFGFVDLHYISEEDDQVFLHFCSKVYVYNYKNSTVKTLDIQGQPSILYNSSRVYFESL 390
           HGF  +    IS   +  FL +  KV   + K +T+KT DI   P+   N S  YF S+
Sbjct: 204 HGFSNMKFTAISVLKNSTFLDWVKKVQASSIKLNTMKTFDIISIPN--ENYSIEYFSSV 260


>CTR9_YEAST (P89105) CTR9 protein
          Length = 1077

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 29/95 (30%), Positives = 42/95 (43%), Gaps = 4/95 (4%)

Query: 2   RQPLTHSKRKHRHNVVSTTVRKQNSSDPFGLFALLWLDLFLEILYRLPVKSLLVLKCVSK 61
           R P    K KH +       +K    DPF +FA   L +      RL   +L +L+ V  
Sbjct: 668 RNPKEQEKSKHSYLKAIQLYQKVLQVDPFNIFAAQGLAIIFAESKRLG-PALEILRKVRD 726

Query: 62  SLNSLISDPKFVKHHLHLSQTRPYHLLIRNSELLL 96
           SL++   D +    H +L + R Y   I N EL+L
Sbjct: 727 SLDN--EDVQLNLAHCYL-EMREYGKAIENYELVL 758


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,816,314
Number of Sequences: 164201
Number of extensions: 2347099
Number of successful extensions: 4286
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4284
Number of HSP's gapped (non-prelim): 15
length of query: 404
length of database: 59,974,054
effective HSP length: 113
effective length of query: 291
effective length of database: 41,419,341
effective search space: 12053028231
effective search space used: 12053028231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)