BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122725.8 - phase: 0 /pseudo
(297 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RRF_ARATH (Q9M1X0) Ribosome recycling factor, chloroplast precur... 305 9e-83
RRF_DAUCA (P37706) Ribosome recycling factor, chloroplast precur... 303 3e-82
RRF_SPIOL (P82231) Ribosome recycling factor, chloroplast precur... 300 3e-81
RRF_ANASP (Q8YXK4) Ribosome recycling factor (Ribosome releasing... 205 1e-52
RRF_SYNEL (Q8DM64) Ribosome recycling factor (Ribosome releasing... 194 2e-49
RRF_SYNY3 (P74456) Ribosome recycling factor (Ribosome releasing... 192 1e-48
RRF_PROMM (Q7V6C1) Ribosome recycling factor (Ribosome releasing... 188 2e-47
RRF_GLOVI (Q7NNX0) Ribosome recycling factor (Ribosome releasing... 188 2e-47
RRF_BDEBA (P61302) Ribosome recycling factor (Ribosome releasing... 185 1e-46
RRF_STRMU (Q8DSY2) Ribosome recycling factor (Ribosome releasing... 180 4e-45
RRF_PROMP (Q7V2F9) Ribosome recycling factor (Ribosome releasing... 180 4e-45
RRF_LISMO (Q8Y7G7) Ribosome recycling factor (Ribosome releasing... 180 4e-45
RRF_BACHD (Q9KA66) Ribosome recycling factor 180 4e-45
RRF_LACLA (Q9CE39) Ribosome recycling factor (Ribosome releasing... 179 6e-45
RRF_LISIN (Q92C40) Ribosome recycling factor (Ribosome releasing... 179 7e-45
RRF_BACSU (P81101) Ribosome recycling factor (Ribosome releasing... 179 7e-45
RRF_STRPY (P82556) Ribosome recycling factor (Ribosome releasing... 177 3e-44
RRF_STRP8 (Q8P274) Ribosome recycling factor (Ribosome releasing... 177 3e-44
RRF_STRA5 (P66741) Ribosome recycling factor (Ribosome releasing... 176 5e-44
RRF_STRA3 (P66740) Ribosome recycling factor (Ribosome releasing... 176 5e-44
>RRF_ARATH (Q9M1X0) Ribosome recycling factor, chloroplast precursor
(Ribosome releasing factor, chloroplast) (RRF) (CpFrr)
(RRFHCP)
Length = 275
Score = 305 bits (781), Expect = 9e-83
Identities = 152/193 (78%), Positives = 181/193 (93%)
Query: 98 VRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPV 157
+R+ATIEEIEAEK++IE DVKS+ME+T++ ++T+F+SIRTGR+ +MLDKIEVEYYGSPV
Sbjct: 80 IRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPV 139
Query: 158 SLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDR 217
SLK+IAQISTPD SSLL+ PYDKSSLKAIEKAIVNSD+G+TPNNDG+VIRLS+P LTSDR
Sbjct: 140 SLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDR 199
Query: 218 RKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIK 277
RKEL+K+V+KQ EEGKVALRNIRRDALK+Y+KLEK+KKLSEDNVKDLSSDLQKL D Y+K
Sbjct: 200 RKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLSSDLQKLIDVYMK 259
Query: 278 KVDALYKQKEKVL 290
K++ LYKQKEK L
Sbjct: 260 KIEELYKQKEKEL 272
>RRF_DAUCA (P37706) Ribosome recycling factor, chloroplast precursor
(Ribosome releasing factor, chloroplast) (Nuclear
located protein D2) (Fragment)
Length = 227
Score = 303 bits (777), Expect = 3e-82
Identities = 151/197 (76%), Positives = 181/197 (91%)
Query: 94 RKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYY 153
R G ++ AT+EEIEAEK+ IE VK RME+T++NVK +F+SIRT R+ P MLDKI+VEYY
Sbjct: 28 RTGTLKCATMEEIEAEKSLIEKSVKERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYY 87
Query: 154 GSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQL 213
G+P SLK+IAQISTPD+SSLLV+PYDKSSLK IEKAIVNSD+G+TPNNDG+VIRLSIPQL
Sbjct: 88 GTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQL 147
Query: 214 TSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTD 273
T+DRRKEL+KIV+KQ EEGKVALRNIRRDA+K+Y+KLEK+KKLSEDNVKDLSSDLQK+ D
Sbjct: 148 TADRRKELSKIVAKQAEEGKVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLSSDLQKVID 207
Query: 274 DYIKKVDALYKQKEKVL 290
+YIKKVD+++KQKEK L
Sbjct: 208 EYIKKVDSIFKQKEKEL 224
>RRF_SPIOL (P82231) Ribosome recycling factor, chloroplast precursor
(Ribosome releasing factor, chloroplast) (RRF) (CpFrr)
(RRFHCP)
Length = 271
Score = 300 bits (768), Expect = 3e-81
Identities = 147/197 (74%), Positives = 180/197 (90%)
Query: 94 RKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYY 153
R G R AT+EE+EAEK+ IE + K RME+T++ +++NF+S+RT RA+P+MLD+IEVEYY
Sbjct: 72 RAGTFRCATMEEVEAEKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYY 131
Query: 154 GSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQL 213
G+PVSLK+IAQISTPDASSLL+SPYDKSSLKAIEKAIV S +G++PNNDGEVIRLS+P L
Sbjct: 132 GTPVSLKSIAQISTPDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPL 191
Query: 214 TSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTD 273
TSDRRKEL K+VSK EEGKVA+RNIRRDALK+YEKLEK+KKLSEDNVKDLS+DLQKLTD
Sbjct: 192 TSDRRKELAKVVSKLAEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTD 251
Query: 274 DYIKKVDALYKQKEKVL 290
+Y+KKV+++YKQKE+ L
Sbjct: 252 EYMKKVESIYKQKEQEL 268
>RRF_ANASP (Q8YXK4) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 182
Score = 205 bits (522), Expect = 1e-52
Identities = 100/173 (57%), Positives = 134/173 (76%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
+ +S+M+ T++ + F++IRTGRA S+LDK+ V+YYGSP LK++A ISTPDA+++L+
Sbjct: 5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
PYDKSSL +EKAI SDVG+TP+NDG VIRL+IP LTSDRRKEL KI +K EEG+VA
Sbjct: 65 QPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGRVA 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
+RNIRRDA+ + KLEK+ ++SED KD LQKLT+ Y ++D L +KEK
Sbjct: 125 IRNIRRDAVDSIRKLEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLVEKEK 177
>RRF_SYNEL (Q8DM64) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 182
Score = 194 bits (494), Expect = 2e-49
Identities = 93/173 (53%), Positives = 134/173 (76%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
DV+ RM+++++ + +F+SIRTGRA ++LD++ V+YYG+ L+++A +STPDA+++L+
Sbjct: 5 DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
PYD+S+L +IEKAI SD+G+TPNNDG +RL+IP LT++RRKEL K +K E GKVA
Sbjct: 65 QPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVA 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
+RNIRRDA+ +K K +L+ED VKDL +QKLTD YI K+DAL +KEK
Sbjct: 125 IRNIRRDAIDHIKKAGKAGELTEDEVKDLQEKVQKLTDKYIGKIDALLAEKEK 177
>RRF_SYNY3 (P74456) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 182
Score = 192 bits (487), Expect = 1e-48
Identities = 91/173 (52%), Positives = 129/173 (73%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
++K M+++++ + +F++IRTGRA S+LD+I VEYYG+ LK++A I TPDAS++++
Sbjct: 5 ELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
P+D S+ IEKAI SD+G+TPNNDG+VIRL+IP LT++RRKEL K+ K EEGKVA
Sbjct: 65 QPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVA 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
+RNIRRDA+ K EK+ +SED +DL ++QKLTD K++D L KEK
Sbjct: 125 IRNIRRDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDELLAAKEK 177
>RRF_PROMM (Q7V6C1) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 182
Score = 188 bits (477), Expect = 2e-47
Identities = 86/172 (50%), Positives = 127/172 (73%)
Query: 116 DVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLV 175
++K M ++++ + NF++IRTGRA PS+LD+I VEYYG+ LK++A ISTPD+ ++ +
Sbjct: 5 ELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAI 64
Query: 176 SPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVA 235
P+D S+ IEKAI SD+G+TPNNDG++IR+++P LT +RRKE K+ ++ EEGKVA
Sbjct: 65 QPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAARYAEEGKVA 124
Query: 236 LRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKE 287
LRNIRRDA+ +KLEKD +LS+D D +QKLTD +I +++ +KE
Sbjct: 125 LRNIRRDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIEKYLAEKE 176
>RRF_GLOVI (Q7NNX0) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 182
Score = 188 bits (477), Expect = 2e-47
Identities = 89/168 (52%), Positives = 127/168 (74%)
Query: 121 MERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDK 180
M + ++ NF++IRTGRA+ S+LD+I VEYYG P LKT+A I+TPDAS++L+ PYD
Sbjct: 10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDP 69
Query: 181 SSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIR 240
SSL+ IEK I+ SD+G+ P+NDG+ IRL+IP LT++RRK+L K++ EEG+VA+RNIR
Sbjct: 70 SSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAVRNIR 129
Query: 241 RDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
R A+ K EKD K+SED + L ++QKLTD I++++ L++ KEK
Sbjct: 130 RHAIDEVRKEEKDAKVSEDEARRLQDEVQKLTDKSIQQIEKLFEAKEK 177
>RRF_BDEBA (P61302) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 186
Score = 185 bits (470), Expect = 1e-46
Identities = 90/180 (50%), Positives = 129/180 (71%)
Query: 111 ASIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDA 170
A ++ + +++ME+TL+++ +RTGRA SMLD I V YYG+P L +A ISTPDA
Sbjct: 4 ADVKKNAQAKMEKTLNSLSEELKKVRTGRAQVSMLDGIRVNYYGTPSPLSQVASISTPDA 63
Query: 171 SSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVE 230
S L++P++ + LK IE+AI+ S++GM P NDG+VIRL +P LT +RRK+L K V K E
Sbjct: 64 KSFLIAPWEVAILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKKIAE 123
Query: 231 EGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKVL 290
E +VA+R RRDA +KL+KDK +SED K +D+QK+TDD+IKKVD + ++KEK +
Sbjct: 124 EARVAVRMARRDANDEVKKLQKDKAVSEDEGKKAEADIQKVTDDFIKKVDQVAEEKEKAI 183
>RRF_STRMU (Q8DSY2) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 185
Score = 180 bits (456), Expect = 4e-45
Identities = 94/179 (52%), Positives = 122/179 (67%)
Query: 112 SIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDAS 171
+I K R E++ ++ F SIR GRA S+LD+IEVEYYG P L +A I+ P+A
Sbjct: 4 AIVEKAKERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEAR 63
Query: 172 SLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEE 231
LLVSP+DKSSLK IE AI SD+G+ P NDG VIRL IP LT + RKEL K V K E
Sbjct: 64 VLLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGEN 123
Query: 232 GKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKVL 290
KVA+RNIRRDA+ +K EK K+++ED +K L D+QK+TD+ +K +D++ KEK L
Sbjct: 124 AKVAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSMTANKEKEL 182
>RRF_PROMP (Q7V2F9) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 182
Score = 180 bits (456), Expect = 4e-45
Identities = 87/175 (49%), Positives = 128/175 (72%)
Query: 114 ENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSL 173
E +++S M ++++ + NF++IRTGRA S+LD+I VEYYG+ +K++A IST D+ ++
Sbjct: 3 EQEIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASISTIDSQTI 62
Query: 174 LVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGK 233
+ P+D SSL+ IEKAI SD+G+TPNNDG+VIR+++P LT +RRKE K+ SK EEGK
Sbjct: 63 SIQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGK 122
Query: 234 VALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
VALRNIRRDA+ +K EK+ +S+D +D ++QK TD YI ++ +KEK
Sbjct: 123 VALRNIRRDAVDKEKKDEKEGLISKDVSRDNQLEIQKFTDKYISLIETKLSEKEK 177
>RRF_LISMO (Q8Y7G7) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 185
Score = 180 bits (456), Expect = 4e-45
Identities = 87/170 (51%), Positives = 123/170 (72%)
Query: 118 KSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSP 177
K +ME+ + +IR GRA S+LD++ V+YYG+ + +A IS P+A LL++P
Sbjct: 10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITP 69
Query: 178 YDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALR 237
YDK+ L IEKAI+ SD+G+TPNNDG V+RLSIPQLT +RRKEL K V K+ EE KVA+R
Sbjct: 70 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 238 NIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKE 287
NIRR+A + +KLEK+ ++ED+++ D+QKLTD+ IK +D++ K KE
Sbjct: 130 NIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKE 179
>RRF_BACHD (Q9KA66) Ribosome recycling factor
Length = 184
Score = 180 bits (456), Expect = 4e-45
Identities = 86/174 (49%), Positives = 126/174 (71%)
Query: 115 NDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLL 174
ND + RM + + + + +R GRA P+MLD+I VEYYG+ L +A IS P+A L+
Sbjct: 6 NDAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLV 65
Query: 175 VSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKV 234
+ P+DKSS+ IE+AI SD+G+TP+NDG VIR++IP LT +RR++LTK+V K EE KV
Sbjct: 66 IQPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKV 125
Query: 235 ALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
A+RNIRRDA +K +KD +L+ED+++ ++ D+QKLTD YI+++D + KEK
Sbjct: 126 AVRNIRRDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEK 179
>RRF_LACLA (Q9CE39) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 185
Score = 179 bits (455), Expect = 6e-45
Identities = 88/178 (49%), Positives = 128/178 (71%)
Query: 113 IENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASS 172
I + RM+++L +++ + IR GRA S+LD+++V YYG+P L +A I+ P+A
Sbjct: 5 IVTTAQDRMKQSLGSLQRDLGHIRAGRANASLLDRVQVVYYGAPTPLNQLASITIPEARV 64
Query: 173 LLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEG 232
L+V+P+DKS LK IEKA+ SD+G+TP NDG VIRL IP LT +RR+EL K + K +E
Sbjct: 65 LMVTPFDKSILKDIEKALYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESA 124
Query: 233 KVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKVL 290
KVA+RNIRRDA+ +K EK K+++ED++KDL +++QK+TDD +K+ D L KEK L
Sbjct: 125 KVAIRNIRRDAMDTAKKSEKAKEITEDDLKDLENNIQKVTDDAVKEADRLASIKEKEL 182
>RRF_LISIN (Q92C40) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 185
Score = 179 bits (454), Expect = 7e-45
Identities = 87/170 (51%), Positives = 123/170 (72%)
Query: 118 KSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSP 177
K +ME+ + +IR GRA S+LD++ V+YYG+ + +A IS P+A LL++P
Sbjct: 10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITP 69
Query: 178 YDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALR 237
YDK+ L IEKAI+ SD+G+TPNNDG V+RLSIPQLT +RRKEL K V K+ EE KVA+R
Sbjct: 70 YDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVR 129
Query: 238 NIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKE 287
NIRR+A + +KLEK+ ++ED+++ D+QKLTD+ IK +D++ K KE
Sbjct: 130 NIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITKDKE 179
>RRF_BACSU (P81101) Ribosome recycling factor (Ribosome releasing
factor) (RRF) (Vegetative protein 12B) (VEG12B)
Length = 184
Score = 179 bits (454), Expect = 7e-45
Identities = 81/171 (47%), Positives = 126/171 (73%)
Query: 118 KSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSP 177
K +ME+ + + +++R GRA PS+LDK+ VEYYG+ L ++ I+ P+A L+++P
Sbjct: 9 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITP 68
Query: 178 YDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALR 237
YDK+++ IEKAI+ +D+G+TP +DG +IR++IP LT +RRKEL K+V K EE KVA+R
Sbjct: 69 YDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVR 128
Query: 238 NIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEK 288
N+RRDA +KLEK+ ++ED ++ + D+QKLTD+Y+ K+D++ K KEK
Sbjct: 129 NVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEK 179
>RRF_STRPY (P82556) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 185
Score = 177 bits (449), Expect = 3e-44
Identities = 89/179 (49%), Positives = 125/179 (69%)
Query: 112 SIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDAS 171
+I K R ++ ++ ++SIR GRA S+LD+I+V+YYG+P L +A I+ P+A
Sbjct: 4 AIIETAKERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEAR 63
Query: 172 SLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEE 231
LL+SP+DKSS+K IE+A+ SD+G+TP NDG VIRL IP LT + RKEL K V K E
Sbjct: 64 VLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGEN 123
Query: 232 GKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKVL 290
K+A+RNIRRDA+ +K EK K+++ED +K L D+QK TDD IK++D + +KEK L
Sbjct: 124 AKIAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKEL 182
>RRF_STRP8 (Q8P274) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 185
Score = 177 bits (449), Expect = 3e-44
Identities = 89/179 (49%), Positives = 125/179 (69%)
Query: 112 SIENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDAS 171
+I K R ++ ++ ++SIR GRA S+LD+I+V+YYG+P L +A I+ P+A
Sbjct: 4 AIIETAKERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEAR 63
Query: 172 SLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEE 231
LL+SP+DKSS+K IE+A+ SD+G+TP NDG VIRL IP LT + RKEL K V K E
Sbjct: 64 VLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGEN 123
Query: 232 GKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKVL 290
K+A+RNIRRDA+ +K EK K+++ED +K L D+QK TDD IK++D + +KEK L
Sbjct: 124 AKIAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEIDRMTAEKEKEL 182
>RRF_STRA5 (P66741) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 185
Score = 176 bits (447), Expect = 5e-44
Identities = 87/178 (48%), Positives = 123/178 (68%)
Query: 113 IENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASS 172
I + R E++ ++ F+ IR GRA S+LD+I+VEYYG+P L +A I+ P+A
Sbjct: 5 IVTKAQERFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARV 64
Query: 173 LLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEG 232
LL+SP+DKSS+K IE+AI SD+G+ P NDG VIRL IP LT + R++L K V K E
Sbjct: 65 LLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 233 KVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKVL 290
K+A+RNIRRDA+ +K EK+K+++ED++K L D+QK TDD +K +D + KEK L
Sbjct: 125 KIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTANKEKEL 182
>RRF_STRA3 (P66740) Ribosome recycling factor (Ribosome releasing
factor) (RRF)
Length = 185
Score = 176 bits (447), Expect = 5e-44
Identities = 87/178 (48%), Positives = 123/178 (68%)
Query: 113 IENDVKSRMERTLDNVKTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASS 172
I + R E++ ++ F+ IR GRA S+LD+I+VEYYG+P L +A I+ P+A
Sbjct: 5 IVTKAQERFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARV 64
Query: 173 LLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEG 232
LL+SP+DKSS+K IE+AI SD+G+ P NDG VIRL IP LT + R++L K V K E
Sbjct: 65 LLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENA 124
Query: 233 KVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKVL 290
K+A+RNIRRDA+ +K EK+K+++ED++K L D+QK TDD +K +D + KEK L
Sbjct: 125 KIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTANKEKEL 182
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.133 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,470,456
Number of Sequences: 164201
Number of extensions: 1166061
Number of successful extensions: 6113
Number of sequences better than 10.0: 268
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 5799
Number of HSP's gapped (non-prelim): 391
length of query: 297
length of database: 59,974,054
effective HSP length: 109
effective length of query: 188
effective length of database: 42,076,145
effective search space: 7910315260
effective search space used: 7910315260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC122725.8