BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122723.6 - phase: 0
(437 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HMG4_HUMAN (O15347) High mobility group protein 4 (HMG-4) (High ... 65 3e-10
HMG1_CHICK (P36194) High mobility group protein 1 (HMG-1) 65 3e-10
HMG4_MOUSE (O54879) High mobility group protein 4 (HMG-4) (High ... 65 4e-10
HMG4_CHICK (P40618) High mobility group protein 4 (HMG-4) (High ... 63 1e-09
AR3A_MOUSE (Q62431) AT-rich interactive domain-containing protei... 59 2e-08
AR3A_HUMAN (Q99856) AT-rich interactive domain-containing protei... 59 2e-08
NH10_YEAST (Q03435) Non-histone protein 10 (High mobility group ... 59 2e-08
HMGH_STRPU (P40644) High mobility group protein 1 homolog 58 4e-08
SSRP_ARATH (Q05153) Structure-specific recognition protein 1 hom... 56 2e-07
HMG2_DROME (Q24537) High mobility group protein DSP1 (Dorsal swi... 56 2e-07
NHP1_BABBO (P40632) High mobility group protein homolog NHP1 56 2e-07
HMGL_TRYBR (P26586) High mobility group protein homolog TDP-1 55 5e-07
HM4L_HUMAN (Q9UJ13) High mobility group protein 4-like (HMG-4L) 54 8e-07
SSRP_CAEEL (P41848) Probable structure-specific recognition prot... 53 1e-06
NHPB_YEAST (P11633) Nonhistone chromosomal protein 6B 53 1e-06
LCP1_HUMAN (O94842) Epidermal Langerhans cell protein LCP1 53 1e-06
HMGT_ONCMY (P07746) High mobility group-T protein (HMG-T) (HMG-T... 53 1e-06
HMG1_RAT (P63159) High mobility group protein 1 (HMG-1) (Amphote... 53 1e-06
HMG1_MOUSE (P63158) High mobility group protein 1 (HMG-1) 53 1e-06
HMG1_HUMAN (P09429) High mobility group protein 1 (HMG-1) 53 1e-06
>HMG4_HUMAN (O15347) High mobility group protein 4 (HMG-4) (High
mobility group protein 2a) (HMG-2a)
Length = 199
Score = 65.5 bits (158), Expect = 3e-10
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 249 KRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEKTVYQEK 307
K++DP PK SG+ F +E ++K N + D+++ +GE+WNNL +SEK Y K
Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITK 144
Query: 308 AIKDKERYQAEMEDYRDKMK 327
A K KE+Y+ ++ DY+ K K
Sbjct: 145 AAKLKEKYEKDVADYKSKGK 164
Score = 43.9 bits (102), Expect = 8e-04
Identities = 25/74 (33%), Positives = 33/74 (43%), Gaps = 3/74 (4%)
Query: 252 DPAHPKPNRSGYNFFFA---EQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKA 308
DP PK S Y FF E+H + + S+ E W + EK+ + E A
Sbjct: 4 DPKKPKGKTSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKFDEMA 63
Query: 309 IKDKERYQAEMEDY 322
DK RY EM+DY
Sbjct: 64 KADKVRYDREMKDY 77
>HMG1_CHICK (P36194) High mobility group protein 1 (HMG-1)
Length = 200
Score = 65.5 bits (158), Expect = 3e-10
Identities = 31/80 (38%), Positives = 49/80 (60%), Gaps = 1/80 (1%)
Query: 249 KRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEKTVYQEK 307
K++DP PK SG+ F +E ++K N + D+++ +GE+WNNL + EK Y K
Sbjct: 84 KKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNK 143
Query: 308 AIKDKERYQAEMEDYRDKMK 327
A K KE+Y+ ++ DY+ K K
Sbjct: 144 AAKLKEKYEKDVADYKSKGK 163
Score = 42.7 bits (99), Expect = 0.002
Identities = 25/74 (33%), Positives = 33/74 (43%), Gaps = 4/74 (5%)
Query: 252 DPAHPKPNRSGYNFFFA---EQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKA 308
DP PK S Y FF E+H + + + S+ E W + EK + E A
Sbjct: 4 DPKKPKGKMSAYAFFVQTCREEHKKNPEVPVNF-AEFSKKCSERWKTMSSKEKAKFDEMA 62
Query: 309 IKDKERYQAEMEDY 322
DK RY EM+DY
Sbjct: 63 KADKVRYDREMKDY 76
>HMG4_MOUSE (O54879) High mobility group protein 4 (HMG-4) (High
mobility group protein 2a) (HMG-2a)
Length = 199
Score = 64.7 bits (156), Expect = 4e-10
Identities = 31/80 (38%), Positives = 50/80 (61%), Gaps = 1/80 (1%)
Query: 249 KRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEKTVYQEK 307
K++DP PK SG+ F +E ++K N + D+++ +GE+WNNL ++EK Y K
Sbjct: 85 KKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTK 144
Query: 308 AIKDKERYQAEMEDYRDKMK 327
A K KE+Y+ ++ DY+ K K
Sbjct: 145 AAKLKEKYEKDVADYKSKGK 164
Score = 45.1 bits (105), Expect = 4e-04
Identities = 25/74 (33%), Positives = 33/74 (43%), Gaps = 3/74 (4%)
Query: 252 DPAHPKPNRSGYNFFFA---EQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKA 308
DP PK S Y FF E+H + + S+ E W + EK+ + E A
Sbjct: 4 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMA 63
Query: 309 IKDKERYQAEMEDY 322
DK RY EM+DY
Sbjct: 64 KADKVRYDREMKDY 77
>HMG4_CHICK (P40618) High mobility group protein 4 (HMG-4) (High
mobility group protein 2a) (HMG-2a)
Length = 201
Score = 63.2 bits (152), Expect = 1e-09
Identities = 30/80 (37%), Positives = 48/80 (59%), Gaps = 1/80 (1%)
Query: 249 KRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEKTVYQEK 307
K++DP PK S + F +E ++K N + D+++ +GE+WNNL + EK Y K
Sbjct: 85 KKKDPNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNK 144
Query: 308 AIKDKERYQAEMEDYRDKMK 327
A K KE+Y+ ++ DY+ K K
Sbjct: 145 AAKLKEKYEKDVADYKSKGK 164
Score = 44.7 bits (104), Expect = 5e-04
Identities = 25/74 (33%), Positives = 32/74 (42%), Gaps = 3/74 (4%)
Query: 252 DPAHPKPNRSGYNFFFA---EQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKA 308
DP PK S Y FF E+H + + S+ E W + EK + E A
Sbjct: 4 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMA 63
Query: 309 IKDKERYQAEMEDY 322
DK RY EM+DY
Sbjct: 64 KADKVRYDREMKDY 77
>AR3A_MOUSE (Q62431) AT-rich interactive domain-containing protein
3A (ARID domain-containing protein 3A) (Dead ringer
like-1 protein) (B-cell regulator of IgH transcription)
(Bright)
Length = 601
Score = 59.3 bits (142), Expect = 2e-08
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 24 SYPEPLAKYDDVVANPKL--FMLTLEKLHASMGTKF-MVPIIGGKELDLCRLFIEVTSRG 80
++ E + ++ A+PK F+ L GT +PI+ + LDL L++ VT +G
Sbjct: 229 TFEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKG 288
Query: 81 GIEKLMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYE 123
G+ +++ ++ W+E+T + P++ T+A+F LR Y LY YE
Sbjct: 289 GLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 331
>AR3A_HUMAN (Q99856) AT-rich interactive domain-containing protein
3A (ARID domain-containing protein 3A) (B-cell regulator
of IgH transcription) (Bright) (E2F binding protein 1)
Length = 593
Score = 59.3 bits (142), Expect = 2e-08
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 24 SYPEPLAKYDDVVANPKL--FMLTLEKLHASMGTKF-MVPIIGGKELDLCRLFIEVTSRG 80
+Y E + ++ +PK F+ L GT +PI+ + LDL L++ VT +G
Sbjct: 224 TYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKG 283
Query: 81 GIEKLMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYE 123
G+ +++ ++ W+E+T + P++ T+A+F LR Y LY YE
Sbjct: 284 GLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 326
>NH10_YEAST (Q03435) Non-histone protein 10 (High mobility group
protein 2)
Length = 203
Score = 58.9 bits (141), Expect = 2e-08
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 239 RRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKE 298
R+ + K+ ++K RDP PK + Y + R++ Q D++R + E W NL E
Sbjct: 77 RKSKTKRHKVKERDPNMPKRPTNAYLLYCEMNKERIR---QNGSLDVTRDLAEGWKNLNE 133
Query: 299 SEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDNAGPLQQRF---PEGDSALV 350
++ Y + +D+ERYQ EME Y K+ D+ +Q+ EG S V
Sbjct: 134 QDRKPYYKLYSEDRERYQMEMEIYNKKISNIDADDDKEENEQKIKNNEEGSSTKV 188
>HMGH_STRPU (P40644) High mobility group protein 1 homolog
Length = 200
Score = 58.2 bits (139), Expect = 4e-08
Identities = 46/165 (27%), Positives = 74/165 (43%), Gaps = 27/165 (16%)
Query: 212 KGVLYESPQSIKINNNNIASA---ALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFA 268
KGV +E K+ + + G + +RRRR+K DP PK N S + F
Sbjct: 59 KGVFHEKSMRDKVRYDREMQSYKPPKGEKNKRRRRRK------DPDAPKRNLSAFFIFSG 112
Query: 269 EQHARLKLLNQTMDK-DISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMK 327
E A +K ++ DI++ + W + EK + + A KDKERY M +Y+ K K
Sbjct: 113 ENRAAIKSVHPNWSVGDIAKELAVRWRAMTAGEKIPFDKGAAKDKERYIKAMAEYKAKAK 172
Query: 328 TSIVTDNAGPLQQRFPEGDSALVDVDIKMHDSCQTPEESSSGESD 372
P++++ E S+ S + ++SSS +SD
Sbjct: 173 ---------PMKRQVKESSSS--------SSSDSSSDDSSSDDSD 200
Score = 44.3 bits (103), Expect = 6e-04
Identities = 23/78 (29%), Positives = 39/78 (49%), Gaps = 3/78 (3%)
Query: 249 KRRDPAHPKPNRSGYNFFFAE---QHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQ 305
K RD + P+ S Y +F + +H + + + S+ W L+E K V+
Sbjct: 4 KDRDSSKPRGRMSAYAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWKALEEKGKGVFH 63
Query: 306 EKAIKDKERYQAEMEDYR 323
EK+++DK RY EM+ Y+
Sbjct: 64 EKSMRDKVRYDREMQSYK 81
>SSRP_ARATH (Q05153) Structure-specific recognition protein 1
homolog (HMG protein)
Length = 646
Score = 56.2 bits (134), Expect = 2e-07
Identities = 32/124 (25%), Positives = 64/124 (50%), Gaps = 9/124 (7%)
Query: 220 QSIKINNNNIASAALGVQRRRRR--------RKKSEIKRRDPAHPKPNRSGYNFFFAEQH 271
+SIK AS++ G+ +R+ ++K K++DP PK SG+ FF +
Sbjct: 518 KSIKKEPKKEASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAMSGFMFFSQMER 577
Query: 272 ARLKLLNQTMD-KDISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSI 330
+K + + ++ +++G+ W + +K Y+ KA DK+RY+ E+ DY++ ++
Sbjct: 578 DNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPMNV 637
Query: 331 VTDN 334
+ N
Sbjct: 638 DSGN 641
>HMG2_DROME (Q24537) High mobility group protein DSP1 (Dorsal switch
protein 1)
Length = 393
Score = 56.2 bits (134), Expect = 2e-07
Identities = 36/140 (25%), Positives = 66/140 (46%), Gaps = 6/140 (4%)
Query: 241 RRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDK-DISRMIGELWNNLKES 299
R +K+ +IK DP PK + S + +F ++ ++K LN DI++ +G W+++
Sbjct: 258 RGKKRKQIK--DPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPE 315
Query: 300 EKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDNAGPLQQRFPEGDSALVDVDIKMHDS 359
K Y+ A +DK RY+ EM +Y+ K ++ + Q + + L + H
Sbjct: 316 VKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQAQAQKAALLAAAAQQQHQQ 375
Query: 360 CQTPEESSSGESDYVADDIN 379
+ + G+ D DD N
Sbjct: 376 LEEQHDDDDGDGD---DDEN 392
Score = 45.4 bits (106), Expect = 3e-04
Identities = 26/96 (27%), Positives = 48/96 (49%), Gaps = 10/96 (10%)
Query: 237 QRRRRRRKKSEIKRRDP-------AHPKPNRSGYNFFFA---EQHARLKLLNQTMDKDIS 286
Q ++++++++ I P A P+ + Y +F E+H + + + S
Sbjct: 153 QMQQQQQQQNVINSASPMSRVKADAKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFS 212
Query: 287 RMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDY 322
R E W + + EK + E A KDK+RY+AEM++Y
Sbjct: 213 RKCAERWKTMVDKEKKRFHEMAEKDKQRYEAEMQNY 248
>NHP1_BABBO (P40632) High mobility group protein homolog NHP1
Length = 97
Score = 55.8 bits (133), Expect = 2e-07
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 230 ASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDIS--- 286
AS GV+R R+ +K DP PK S Y FF E+ + N + KD++
Sbjct: 4 ASDRTGVRRPRKAKK-------DPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIG 56
Query: 287 RMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDK 325
+MIG WN L + EK Y+ + +D+ RY+ E +Y +
Sbjct: 57 KMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEYAQR 95
>HMGL_TRYBR (P26586) High mobility group protein homolog TDP-1
Length = 271
Score = 54.7 bits (130), Expect = 5e-07
Identities = 29/91 (31%), Positives = 52/91 (56%), Gaps = 2/91 (2%)
Query: 235 GVQRRRRRRKKSEIKRRDPA-HPKPNRSGYNFFFAEQHARLKLLNQTMDKD-ISRMIGEL 292
G + + +K+ K + PA +PKP S Y F A+Q LK N M I + +G++
Sbjct: 96 GAEAPSKTKKEMTEKPKKPADYPKPAVSSYLLFVADQREELKAKNPGMQNTAILQTLGKM 155
Query: 293 WNNLKESEKTVYQEKAIKDKERYQAEMEDYR 323
W++ + K Y++KA +DK R++ E+++Y+
Sbjct: 156 WSDASDDVKEHYRKKAEEDKARFRREVDEYK 186
Score = 45.1 bits (105), Expect = 4e-04
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 250 RRDPAHPKPNRSGYNFF---FAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQE 306
++D PK + + FF F +H+ L ++ ++S+ G W L E+ VY+E
Sbjct: 200 KKDSNAPKRAMTSFMFFSSDFRSKHSDLSIV------EMSKAAGAAWKELGPEERKVYEE 253
Query: 307 KAIKDKERYQAEM 319
A KDKERY+ EM
Sbjct: 254 MAEKDKERYKREM 266
>HM4L_HUMAN (Q9UJ13) High mobility group protein 4-like (HMG-4L)
Length = 183
Score = 53.9 bits (128), Expect = 8e-07
Identities = 29/79 (36%), Positives = 46/79 (57%), Gaps = 2/79 (2%)
Query: 250 RRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEKTVYQEKA 308
+ DP PK SG+ F +E ++K N + D+++ +GE+WNNL +SEK Y K
Sbjct: 76 KNDPNAPKRPLSGFFLFCSEFCPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYVTKV 135
Query: 309 IKDKERYQAEMEDYRDKMK 327
K K +Y+ ++ DY+ K K
Sbjct: 136 AKLK-KYEKDVADYKSKGK 153
>SSRP_CAEEL (P41848) Probable structure-specific recognition protein
1 (SSRP1) (Recombination signal sequence recognition
protein)
Length = 697
Score = 53.1 bits (126), Expect = 1e-06
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 3/163 (1%)
Query: 237 QRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNL 296
++R ++ K K +DP PK S Y +F LK ++ D+++ G W +
Sbjct: 537 EKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKEDGDSV-ADVAKKGGAKWKTM 595
Query: 297 KESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDNAGPLQQRFPEGDSALVDVDIK- 355
+K ++EKA +DK RY+ EM++YR S + + + G S+ + +
Sbjct: 596 SSDDKKKWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKSSGPSSSKAISKEY 655
Query: 356 MHDSCQTPEESSSGESDYVADDINMDASSGGARVDSEAFVDSD 398
+ DS + +E + A + S+ G+ E+ DSD
Sbjct: 656 ISDSDDSDDEEPKKKEKKAAPKEESEESNNGSDGSDES-DDSD 697
>NHPB_YEAST (P11633) Nonhistone chromosomal protein 6B
Length = 99
Score = 53.1 bits (126), Expect = 1e-06
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 231 SAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMI 289
+A ++ + +K++ +++DP PK S Y FF E ++ N + + R++
Sbjct: 2 AATKEAKQPKEPKKRTTRRKKDPNAPKRRLSAYMFFANENRDIVRSENPDVTFGQVGRIL 61
Query: 290 GELWNNLKESEKTVYQEKAIKDKERYQAEMEDY 322
GE W L EK Y+ KA DK+RY++E E Y
Sbjct: 62 GERWKALTAEEKQPYESKAQADKKRYESEKELY 94
>LCP1_HUMAN (O94842) Epidermal Langerhans cell protein LCP1
Length = 621
Score = 53.1 bits (126), Expect = 1e-06
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 16/161 (9%)
Query: 236 VQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWN 294
V+ ++++ + K++DP P+ S Y FF + A +K N ++S+++ +W+
Sbjct: 203 VEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWD 262
Query: 295 NLKESEKTVYQEKAIKDKERYQAEMEDYRDKMK-----TSIVTDNAGPLQQRFPEGDSAL 349
+L E +K VY+ K K+ Y + Y+D + ++ D A P Q P A
Sbjct: 263 SLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPSPP-PMAT 321
Query: 350 VDVDIKMHDSCQTPEES-----SSGESDYVADDINMDASSG 385
VD S + P S +S S YVA+ ASSG
Sbjct: 322 VDPASPAPASIEPPALSPSIVVNSTLSSYVAN----QASSG 358
>HMGT_ONCMY (P07746) High mobility group-T protein (HMG-T) (HMG-T1)
(HMG-1)
Length = 204
Score = 53.1 bits (126), Expect = 1e-06
Identities = 30/89 (33%), Positives = 50/89 (55%), Gaps = 3/89 (3%)
Query: 245 KSEIKRR--DPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEK 301
K E K+R DP PK S + F A+ ++K + D+++ +GE WNNL +K
Sbjct: 81 KGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDK 140
Query: 302 TVYQEKAIKDKERYQAEMEDYRDKMKTSI 330
Y++KA + KE+Y+ ++ YR+K K +
Sbjct: 141 VPYEKKASRLKEKYEKDITAYRNKGKVPV 169
Score = 39.7 bits (91), Expect = 0.015
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 251 RDPAHPKPNRSGYNFFFA---EQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEK 307
+DP P+ S Y +F E+H + + S+ E W + EK +++
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 308 AIKDKERYQAEMEDY 322
A DK RY+ EM Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>HMG1_RAT (P63159) High mobility group protein 1 (HMG-1)
(Amphoterin) (Heparin-binding protein p30)
Length = 214
Score = 53.1 bits (126), Expect = 1e-06
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 245 KSEIKRR--DPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEK 301
K E K++ DP PK S + F +E ++K + + D+++ +GE+WNN +K
Sbjct: 81 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
Query: 302 TVYQEKAIKDKERYQAEMEDYRDKMK 327
Y++KA K KE+Y+ ++ YR K K
Sbjct: 141 QPYEKKAAKLKEKYEKDIAAYRAKGK 166
Score = 40.8 bits (94), Expect = 0.007
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 3/74 (4%)
Query: 252 DPAHPKPNRSGYNFFFA---EQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKA 308
DP P+ S Y FF E+H + + S+ E W + EK +++ A
Sbjct: 4 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 309 IKDKERYQAEMEDY 322
DK RY+ EM+ Y
Sbjct: 64 KADKARYEREMKTY 77
>HMG1_MOUSE (P63158) High mobility group protein 1 (HMG-1)
Length = 214
Score = 53.1 bits (126), Expect = 1e-06
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 245 KSEIKRR--DPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEK 301
K E K++ DP PK S + F +E ++K + + D+++ +GE+WNN +K
Sbjct: 81 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
Query: 302 TVYQEKAIKDKERYQAEMEDYRDKMK 327
Y++KA K KE+Y+ ++ YR K K
Sbjct: 141 QPYEKKAAKLKEKYEKDIAAYRAKGK 166
Score = 40.8 bits (94), Expect = 0.007
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 3/74 (4%)
Query: 252 DPAHPKPNRSGYNFFFA---EQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKA 308
DP P+ S Y FF E+H + + S+ E W + EK +++ A
Sbjct: 4 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 309 IKDKERYQAEMEDY 322
DK RY+ EM+ Y
Sbjct: 64 KADKARYEREMKTY 77
>HMG1_HUMAN (P09429) High mobility group protein 1 (HMG-1)
Length = 214
Score = 53.1 bits (126), Expect = 1e-06
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 245 KSEIKRR--DPAHPKPNRSGYNFFFAEQHARLKLLNQTMD-KDISRMIGELWNNLKESEK 301
K E K++ DP PK S + F +E ++K + + D+++ +GE+WNN +K
Sbjct: 81 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
Query: 302 TVYQEKAIKDKERYQAEMEDYRDKMK 327
Y++KA K KE+Y+ ++ YR K K
Sbjct: 141 QPYEKKAAKLKEKYEKDIAAYRAKGK 166
Score = 40.8 bits (94), Expect = 0.007
Identities = 22/74 (29%), Positives = 33/74 (43%), Gaps = 3/74 (4%)
Query: 252 DPAHPKPNRSGYNFFFA---EQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKA 308
DP P+ S Y FF E+H + + S+ E W + EK +++ A
Sbjct: 4 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query: 309 IKDKERYQAEMEDY 322
DK RY+ EM+ Y
Sbjct: 64 KADKARYEREMKTY 77
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,239,465
Number of Sequences: 164201
Number of extensions: 2118417
Number of successful extensions: 5718
Number of sequences better than 10.0: 174
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 5499
Number of HSP's gapped (non-prelim): 255
length of query: 437
length of database: 59,974,054
effective HSP length: 113
effective length of query: 324
effective length of database: 41,419,341
effective search space: 13419866484
effective search space used: 13419866484
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC122723.6