BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122169.6 + phase: 0
(622 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GYRB_BACHD (O50627) DNA gyrase subunit B (EC 5.99.1.3) 630 e-180
GYRB_STAAN (P66937) DNA gyrase subunit B (EC 5.99.1.3) 625 e-179
GYRB_STAAM (P66936) DNA gyrase subunit B (EC 5.99.1.3) 625 e-179
GYRB_BACSU (P05652) DNA gyrase subunit B (EC 5.99.1.3) 625 e-178
GYRB_STAAW (P20832) DNA gyrase subunit B (EC 5.99.1.3) 624 e-178
GYRB_CLOAB (P94604) DNA gyrase subunit B (EC 5.99.1.3) 623 e-178
GYRB_STAEP (Q8CQK4) DNA gyrase subunit B (EC 5.99.1.3) 620 e-177
GYRB_THEMA (P77993) DNA gyrase subunit B (EC 5.99.1.3) (Topoisom... 610 e-174
GYRB_BACAN (Q9X3Y6) DNA gyrase subunit B (EC 5.99.1.3) 604 e-172
GYRB_HALSQ (P21558) DNA gyrase subunit B (EC 5.99.1.3) 584 e-166
GYRB_STRPN (P48373) DNA gyrase subunit B (EC 5.99.1.3) 583 e-166
GYRB_BORBU (P33769) DNA gyrase subunit B (EC 5.99.1.3) 583 e-166
GYRB_TREDE (O87545) DNA gyrase subunit B (EC 5.99.1.3) 566 e-161
GYRB_ARCFU (O29720) DNA gyrase subunit B (EC 5.99.1.3) 558 e-158
GYRB_TREPA (O08399) DNA gyrase subunit B (EC 5.99.1.3) 558 e-158
GYRB_BORHE (Q9ZFK1) DNA gyrase subunit B (EC 5.99.1.3) 553 e-157
GYBS_STRSH (P50075) DNA gyrase subunit B, novobiocin-sensitive (... 551 e-156
GYBR_STRSH (P50074) DNA gyrase subunit B, novobiocin-resistant (... 547 e-155
GYRB_STRCO (P35886) DNA gyrase subunit B (EC 5.99.1.3) 544 e-154
PARE_STRPN (Q59961) Topoisomerase IV subunit B (EC 5.99.1.-) 535 e-151
>GYRB_BACHD (O50627) DNA gyrase subunit B (EC 5.99.1.3)
Length = 637
Score = 630 bits (1624), Expect = e-180
Identities = 324/616 (52%), Positives = 425/616 (68%), Gaps = 12/616 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGST RGLHHLV+EI+DN++DEA AGF +I VV+ D+S+++ DNGRGIP +H
Sbjct: 28 MYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVVIEEDNSITVTDNGRGIPVGIHEK 87
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
+ A+E ++T+LHAGGKFGG GY VSGGLHGVG SVVNALS LEV V REG + Q
Sbjct: 88 MGRPAVEVIMTVLHAGGKFGG--GGYKVSGGLHGVGASVVNALSTMLEVEVHREGKVHYQ 145
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
+ RG P L + DR GT+I F PD ++FT FEY+T+A R+RELAFLN
Sbjct: 146 KFHRGVPAADLEVI----GTTDRTGTKIHFKPDGDIFTETTVFEYDTLASRLRELAFLNK 201
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDV-LSFRKEIDGITVDIA 239
L I K + E+ +S+E+ Y GG+A +V+ LN ++ +H+ + E G+ V+IA
Sbjct: 202 GLRI---KITDMREEEKSDEFHYEGGIASFVEHLNRTRETLHETPIHIEGEKQGVYVEIA 258
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
+Q+ D ++ I +AN+I T +GGTH G K LTR +N +K + KE D L+GE
Sbjct: 259 VQY-NDGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARKHNLFKESDPNLTGED 317
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
VREGLT ++SVK+P+P+FEGQTKT+LGN E R + D E+ + +L HP V ++ K
Sbjct: 318 VREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSRFLIEHPQVARKLVDK 377
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
L A +A AAK+AREL R+KS L SSLPGKLADCSS + EI+IVEGDSAGGSAKQ
Sbjct: 378 GLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISEIYIVEGDSAGGSAKQ 437
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GRDR FQAILPLRGKILN+E+ + N EI+ +I LG G+ G+DF + RYHKII
Sbjct: 438 GRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGI-GDDFDIEKARYHKII 496
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKK 539
I+TDADVDGAHIRTL+LTFFYRY R L + GY+Y+ PPLYKV +GK + Y Y +A+L++
Sbjct: 497 IMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKDIQYAYGDAELQE 556
Query: 540 LKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGA 599
+ S A +QR+KGLGEM P QLWETTMDP QR + ++T+EDA +A+ +F LMG
Sbjct: 557 ILSQLPDKAKPGIQRYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKADEIFEILMGD 616
Query: 600 RVDVRKELIQNAANMI 615
RV+ R++ IQ A +
Sbjct: 617 RVEPRRDFIQENARYV 632
>GYRB_STAAN (P66937) DNA gyrase subunit B (EC 5.99.1.3)
Length = 643
Score = 625 bits (1613), Expect = e-179
Identities = 327/619 (52%), Positives = 428/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGST RGLHHLV+EI+DN++DEA AG+A+KI+VV+ D+ + + DNGRGIP D+
Sbjct: 33 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVVIEKDNWIKVTDNGRGIPVDIQEK 92
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
+ A+E +LT+LHAGGKFGG GY VSGGLHGVG SVVNALS+ LEV V R Y Q
Sbjct: 93 MGRPAVEVILTVLHAGGKFGG--GGYKVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 150
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y +G P L V D+ GT I+F D E+FT + Y T+ RIRELAFLN
Sbjct: 151 AYKKGVPQFDLKEV----GTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 206
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDV-LSFRKEIDGITVDIA 239
+ I LR E D E V+ + Y Y GG+ YV+ LN +K+ +HD + + D I V+IA
Sbjct: 207 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 265
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
+Q+ Y+ +L YAN+I T +GGTH DG K +LTR LNS G SK++KE+ LSGE
Sbjct: 266 IQY-NSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGED 324
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
REG+T ++S+K +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +V+ K
Sbjct: 325 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 384
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+ARE+ R+KS L +SLPGKLADCSS +PE+CEIF+VEGDSAGGS K
Sbjct: 385 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 444
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GRD R QAILPLRGKILN+E+ + N EI+ +I G G+ G DF RYHKI+
Sbjct: 445 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI-GGDFDLAKARYHKIV 503
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKK 539
I+TDADVDGAHIRTLLLTFFYR+ R L + GY+Y+ PPLYK+T+GKQ +Y Y++ +L K
Sbjct: 504 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 563
Query: 540 LKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGA 599
LKS P +++ R+KGLGEM QLWETTM+PE R L ++ +EDA EA+ F LMG
Sbjct: 564 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 623
Query: 600 RVDVRKELIQNAANMIDLD 618
V+ R++ I++ A +LD
Sbjct: 624 VVENRRQFIEDNAVYANLD 642
>GYRB_STAAM (P66936) DNA gyrase subunit B (EC 5.99.1.3)
Length = 643
Score = 625 bits (1613), Expect = e-179
Identities = 327/619 (52%), Positives = 428/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGST RGLHHLV+EI+DN++DEA AG+A+KI+VV+ D+ + + DNGRGIP D+
Sbjct: 33 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVVIEKDNWIKVTDNGRGIPVDIQEK 92
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
+ A+E +LT+LHAGGKFGG GY VSGGLHGVG SVVNALS+ LEV V R Y Q
Sbjct: 93 MGRPAVEVILTVLHAGGKFGG--GGYKVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 150
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y +G P L V D+ GT I+F D E+FT + Y T+ RIRELAFLN
Sbjct: 151 AYKKGVPQFDLKEV----GTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 206
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDV-LSFRKEIDGITVDIA 239
+ I LR E D E V+ + Y Y GG+ YV+ LN +K+ +HD + + D I V+IA
Sbjct: 207 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 265
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
+Q+ Y+ +L YAN+I T +GGTH DG K +LTR LNS G SK++KE+ LSGE
Sbjct: 266 IQY-NSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGED 324
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
REG+T ++S+K +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +V+ K
Sbjct: 325 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 384
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+ARE+ R+KS L +SLPGKLADCSS +PE+CEIF+VEGDSAGGS K
Sbjct: 385 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 444
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GRD R QAILPLRGKILN+E+ + N EI+ +I G G+ G DF RYHKI+
Sbjct: 445 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI-GGDFDLAKARYHKIV 503
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKK 539
I+TDADVDGAHIRTLLLTFFYR+ R L + GY+Y+ PPLYK+T+GKQ +Y Y++ +L K
Sbjct: 504 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 563
Query: 540 LKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGA 599
LKS P +++ R+KGLGEM QLWETTM+PE R L ++ +EDA EA+ F LMG
Sbjct: 564 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 623
Query: 600 RVDVRKELIQNAANMIDLD 618
V+ R++ I++ A +LD
Sbjct: 624 VVENRRQFIEDNAVYANLD 642
>GYRB_BACSU (P05652) DNA gyrase subunit B (EC 5.99.1.3)
Length = 638
Score = 625 bits (1612), Expect = e-178
Identities = 316/620 (50%), Positives = 427/620 (67%), Gaps = 12/620 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGST +GLHHLV+EI+DN++DEA AG+ + I++ + D+S+++ DNGRGIP +H
Sbjct: 28 MYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDINIQIEKDNSITVVDNGRGIPVGIHEK 87
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
+ A+E ++T+LHAGGKF G SGY VSGGLHGVG SVVNALS L+VTV R+G + Q
Sbjct: 88 MGRPAVEVIMTVLHAGGKFDG--SGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQ 145
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
TY RG PVT L + D GT F PD E+F+ E++Y+ +A R+RELAFL
Sbjct: 146 TYKRGVPVTDLEII----GETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTK 201
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDV-LSFRKEIDGITVDIA 239
+ I + ED + + NEY Y GG+ YV++LN K+ VH+ + E DGITV++A
Sbjct: 202 GVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVA 259
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
LQ+ D+Y+ I + N+I T +GGTH G K LTR +N +K +IKE D LSG+
Sbjct: 260 LQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDD 318
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
VREGLT ++S+K P+P+FEGQTKT+LGN E R + D + ++ +PD ++ K
Sbjct: 319 VREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDK 378
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
L A +A +AAK+AREL R+KS L S+LPGKLADCSS +P E++IVEGDSAGGSAKQ
Sbjct: 379 GLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQ 438
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GRDR FQAILPLRGKILN+E+ + N E++++I LG G+ GEDF + RYHK++
Sbjct: 439 GRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYHKVV 497
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKK 539
I+TDADVDGAHIRTLLLTFFYRY R + + GY+Y+ PPLYKV +GK+V Y Y++ +L++
Sbjct: 498 IMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEE 557
Query: 540 LKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGA 599
L + +QR+KGLGEM QLWETTMDP R L ++T+EDA +A+ F LMG
Sbjct: 558 LLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGD 617
Query: 600 RVDVRKELIQ-NAANMIDLD 618
+V+ R+ I+ NA + +LD
Sbjct: 618 KVEPRRNFIEANARYVKNLD 637
>GYRB_STAAW (P20832) DNA gyrase subunit B (EC 5.99.1.3)
Length = 643
Score = 624 bits (1609), Expect = e-178
Identities = 326/619 (52%), Positives = 428/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGST RGLHHLV+EI+DN++DEA AG+A++I+VV+ D+ + + DNGRGIP D+
Sbjct: 33 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 92
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
+ A+E +LT+LHAGGKFGG GY VSGGLHGVG SVVNALS+ LEV V R Y Q
Sbjct: 93 MGRPAVEVILTVLHAGGKFGG--GGYKVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 150
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y +G P L V D+ GT I+F D E+FT + Y T+ RIRELAFLN
Sbjct: 151 AYKKGVPQFDLKEV----GTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 206
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDV-LSFRKEIDGITVDIA 239
+ I LR E D E V+ + Y Y GG+ YV+ LN +K+ +HD + + D I V+IA
Sbjct: 207 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 265
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
+Q+ Y+ +L YAN+I T +GGTH DG K +LTR LNS G SK++KE+ LSGE
Sbjct: 266 IQY-NSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGED 324
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
REG+T ++S+K +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +V+ K
Sbjct: 325 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 384
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+ARE+ R+KS L +SLPGKLADCSS +PE+CEIF+VEGDSAGGS K
Sbjct: 385 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 444
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GRD R QAILPLRGKILN+E+ + N EI+ +I G G+ G DF RYHKI+
Sbjct: 445 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI-GGDFDLAKARYHKIV 503
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKK 539
I+TDADVDGAHIRTLLLTFFYR+ R L + GY+Y+ PPLYK+T+GKQ +Y Y++ +L K
Sbjct: 504 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 563
Query: 540 LKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGA 599
LKS P +++ R+KGLGEM QLWETTM+PE R L ++ +EDA EA+ F LMG
Sbjct: 564 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 623
Query: 600 RVDVRKELIQNAANMIDLD 618
V+ R++ I++ A +LD
Sbjct: 624 VVENRRQFIEDNAVYANLD 642
>GYRB_CLOAB (P94604) DNA gyrase subunit B (EC 5.99.1.3)
Length = 637
Score = 623 bits (1607), Expect = e-178
Identities = 333/625 (53%), Positives = 443/625 (70%), Gaps = 23/625 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLVYEI+DN++DEA AG+ S I V +H D+SV+++D+GRG+P +H
Sbjct: 28 MYIGSTGTRGLHHLVYEIVDNSIDEALAGYCSHIKVFIHKDNSVTVSDDGRGMPIGIHHK 87
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
KK +E ++TILHAGGKFGG Y VSGGLHGVG SVVNALSE EV V EG + Q
Sbjct: 88 MKKPTVEVIMTILHAGGKFGG--GAYRVSGGLHGVGASVVNALSETCEVEVKTEGHIWKQ 145
Query: 121 TYSRGKPVTTLNCVMLPFE---NKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAF 177
TY RGK V PFE + D GT+I F PD E+F E++Y+T++ R+RELAF
Sbjct: 146 TYHRGK-------VASPFEKIGDSDEHGTKIYFKPDPEIFEDT-EYDYDTLSQRLRELAF 197
Query: 178 LNPKLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVH-DVLSFRKEIDG-IT 235
LN + I L E +D ++ + Y GGL +V +LN +K+ V + + ID +
Sbjct: 198 LNKGIKIELTDERHDKNEI----FHYEGGLKSFVSYLNRNKEVVFKEPIYVEGSIDSNYS 253
Query: 236 VDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITL 295
V+IALQ+ D Y++ I +AN+I T++GGTH+ G K +LTR +N KK +KE D L
Sbjct: 254 VEIALQY-NDGYNENIFSFANNIHTIEGGTHLAGFKTALTRVINDYAKKFGYLKENDKNL 312
Query: 296 SGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDS 355
SGE +REGLT VVSVK+ P+FEGQTKT+LGN EVR +VD I E ++ YLE +P +
Sbjct: 313 SGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIVDSIISERVSTYLEENPQIGKL 372
Query: 356 VLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGG 415
V+ KAL A +A AAK+ARE+ R+KSVL S+SLPGKLADCSS + E+CEI+IVEGDSAGG
Sbjct: 373 VIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLADCSSKDAEECEIYIVEGDSAGG 432
Query: 416 SAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRY 475
SAKQGR+RRFQAILPLRGKI+N+E++ + +EEI+ + G G+ G+DF LRY
Sbjct: 433 SAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKAMATAFGGGI-GKDFDVSKLRY 491
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEA 535
HKIII+TDADVDGAHIRTL+LTFFYRY L EG++++ PPLYKVT+ ++ +Y Y +
Sbjct: 492 HKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSDK 551
Query: 536 DLKK-LKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFS 594
+L+ L+ + + ++QR+KGLGEM P QLWETTM+PEQR L K+ +EDA A+ +F+
Sbjct: 552 ELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIFT 611
Query: 595 SLMGARVDVRKELI-QNAANMIDLD 618
LMG +VD R++ I +NA +++LD
Sbjct: 612 ILMGDKVDPRRKFIEENATKVVNLD 636
>GYRB_STAEP (Q8CQK4) DNA gyrase subunit B (EC 5.99.1.3)
Length = 643
Score = 620 bits (1600), Expect = e-177
Identities = 327/619 (52%), Positives = 427/619 (68%), Gaps = 11/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGST RGLHHLV+EI+DN++DEA AG+AS I+VV+ D+ + + DNGRGIP D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYASHIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
+ A+E +LT+LHAGGKFGG GY VSGGLHGVG SVVNALS+ LEV V R G Y Q
Sbjct: 94 MGRPAVEVILTVLHAGGKFGG--GGYKVSGGLHGVGSSVVNALSQDLEVYVHRNGTIYHQ 151
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y +G P L + + D+ GT I+F DKE+FT + Y T+ RIRELAFLN
Sbjct: 152 AYKQGVPQFDLKEI----GDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAFLNK 207
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDV-LSFRKEIDGITVDIA 239
+ I L+ D E+V+ + Y Y GG+ YV LN +K+ +HD + + D I V+IA
Sbjct: 208 GIQITLK--DEREEEVREDSYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEVEIA 265
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
LQ+ Y+ +L YAN+I T +GGTH DG K +LTR LNS G +SK+IKE LSGE
Sbjct: 266 LQY-NSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLSGED 324
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
REGLT VVS+K +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V ++ K
Sbjct: 325 TREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRIIVEK 384
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+ARE+ R+KS L SSLPGKLADCSS NPE+ EIF+VEGDSAGGS K
Sbjct: 385 GIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGSTKS 444
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GRD R QAILPLRGKILN+E+ + N EI+ +I G G+ GE F RYHKI+
Sbjct: 445 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYHKIV 503
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKK 539
I+TDADVDGAHIRTLLLTFFYR+ R L + GY+Y+ PPLYK+T+GKQ +Y +++ +L K
Sbjct: 504 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDK 563
Query: 540 LKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGA 599
LK P+ +++ R+KGLGEM QLWETTM+PE R + ++ +EDA +A+ F LMG
Sbjct: 564 LKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGD 623
Query: 600 RVDVRKELIQNAANMIDLD 618
V+ R++ I++ A +LD
Sbjct: 624 VVENRRQFIEDNAVYANLD 642
>GYRB_THEMA (P77993) DNA gyrase subunit B (EC 5.99.1.3)
(Topoisomerase II subunit B)
Length = 636
Score = 610 bits (1574), Expect = e-174
Identities = 320/630 (50%), Positives = 440/630 (69%), Gaps = 25/630 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLVYE++DN+VDEA AG+ I V LH D SV + DNGRGIP D+HP
Sbjct: 24 MYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTLHEDGSVEVEDNGRGIPVDIHPE 83
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
+SALE V T+LHAGGKF Y +SGGLHGVG+SVVNALSE LEV V R+G Y Q
Sbjct: 84 EGRSALEVVFTVLHAGGKFS--KDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQ 141
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y RGKPVT + + D+ GT ++F PD +F+ EF+ + + R+RE+AFL P
Sbjct: 142 RYERGKPVTPVEVI----GETDKHGTIVRFKPDPLIFSET-EFDPDILEHRLREIAFLVP 196
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEI--------D 232
L I N +K + + GG+ EYV++LN KKA+HDV+ ++ D
Sbjct: 197 GLKIEFEDRINGEKKT----FKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKNGED 252
Query: 233 GITVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKD 292
+ V+IA Q+ D+YS+ I+ +AN+I+TVDGGTH+ K++LTR +N GKK +K KD
Sbjct: 253 EVIVEIAFQYT-DSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK-KD 310
Query: 293 ITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDV 352
+ GE VREGLT V+SV V NPEFEGQTK++LGN EV++ V ++++E L + + +P++
Sbjct: 311 DSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDANPEL 370
Query: 353 LDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDS 412
+ ++LSK ++ +A AAKRARE+VR+K+VL++++LPGKLADCSS++ E E+FIVEGDS
Sbjct: 371 VKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSSTHREKTELFIVEGDS 430
Query: 413 AGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDA 472
AGGSAKQ RDR FQA+LP+RGKILN+E+ + KNE+I ++I+ +G G+ G+DF +
Sbjct: 431 AGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDFDESK 489
Query: 473 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCY 532
LRY +III+TDAD+DGAHIRTLLLT FYRY R L ++G +Y+ +PPLY++ G++ Y Y
Sbjct: 490 LRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVY 549
Query: 533 DEADLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIV 592
+ +L + K +QR+KGLGEM P QLWETTM+PE R + ++T+EDA EA+ +
Sbjct: 550 SDQELAEYKEKL-QGKRIEIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRL 608
Query: 593 FSSLMGARVDVRKELIQNAANMIDLDQLDI 622
F LMG R+E I+ A + + +LDI
Sbjct: 609 FEILMGNDPSSRREFIERHA--LKVKELDI 636
>GYRB_BACAN (Q9X3Y6) DNA gyrase subunit B (EC 5.99.1.3)
Length = 640
Score = 604 bits (1557), Expect = e-172
Identities = 307/616 (49%), Positives = 422/616 (67%), Gaps = 12/616 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGST +GLHHLV+EI+DN++DEA AG+ +I+V + D+S+ + DNGRGIP +
Sbjct: 31 MYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIEEDNSIRVTDNGRGIPVGIQEK 90
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
+ A+E ++T+LHAGGKFGG GY VSGGLHGVG SVVNALS LEV V REG + Q
Sbjct: 91 MGRPAVEVIMTVLHAGGKFGG--GGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQ 148
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y RG PV L + + D+ GT +F PD E+F +E++T+A R+RELAFLN
Sbjct: 149 KYERGIPVADLKVI----GDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNR 204
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRK-EIDGITVDIA 239
+ + + ++ E Q E+ Y GG+ YV+ LN K+ +H+ + + DGI V+++
Sbjct: 205 NIKLTI---EDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVS 261
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
LQ+ E Y++ I + N+I T +GGTH G K +LTR +N G+K+ ++K+ D L+GE
Sbjct: 262 LQYNE-GYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGED 320
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
VREGLT +VS+K PNP+FEGQTKT+LGN E R + + E ++L +P+V ++ K
Sbjct: 321 VREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEK 380
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
A +A +AAK+AREL R+KS L SSLPGKLADCSS +P EI+IVEGDSAGGSAKQ
Sbjct: 381 GTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQ 440
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GRDR FQAILPL+GKI+N+E+ + N+E++ +I +G + G DF + RYHK+I
Sbjct: 441 GRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI-GGDFDIEKARYHKVI 499
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKK 539
I+TDADVDGAHIRTLLLTFFYRY R + + GYIY+ PPL+KV +GK++ Y Y+E +L+K
Sbjct: 500 IMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEK 559
Query: 540 LKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGA 599
+ + +QR+KGLGEM P QLWETTMDPE R L +++++DA EA+ F LMG
Sbjct: 560 ILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGD 619
Query: 600 RVDVRKELIQNAANMI 615
+V+ R+ IQ A +
Sbjct: 620 KVEPRRNFIQENAKYV 635
>GYRB_HALSQ (P21558) DNA gyrase subunit B (EC 5.99.1.3)
Length = 639
Score = 584 bits (1505), Expect = e-166
Identities = 312/624 (50%), Positives = 420/624 (67%), Gaps = 13/624 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGST RGLHHLVYE++DN++DEA AG I+V LH D SVS+ DNGRGIP H
Sbjct: 27 MYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVALHEDGSVSVTDNGRGIPVGTHEQ 86
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
+ ALE ++T+LHAGGKF N Y VSGGLHGVG++VVNALS LEV V +G +T
Sbjct: 87 YDRPALEVIMTVLHAGGKFD--NKSYQVSGGLHGVGVTVVNALSSELEVEVKHDGAVWTH 144
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
+ G+P + E + GT I+FWPD +F T EF++ T+ R+RELAFLN
Sbjct: 145 RFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT-EFDFKTLENRLRELAFLNS 203
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHD-VLSFRKEIDGITVDIA 239
+ I+L E D +S+ + + GG+ E+V++LN K A+HD V+ + E +GI V+IA
Sbjct: 204 GVEISLSDERTD----ESSTFLFEGGIREFVEYLNETKTALHDDVIYYDDESEGIEVEIA 259
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKD-ITLSGE 298
+Q D +I +AN+I T +GGTH+ G K +LTR +N ++ + D L GE
Sbjct: 260 MQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYANSHDMLDDLDGDNLRGE 318
Query: 299 HVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLS 358
VREGLT V+SVK P+P+FEGQTKT+LGN EVR +V+ + L + E +PD +++S
Sbjct: 319 DVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQLGTFFEENPDTATAIIS 378
Query: 359 KALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAK 418
KA+ A +A AAK+A EL R+KS L S+SLPGKLADC S +P + E+FIVEGDSAGGSAK
Sbjct: 379 KAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPSESELFIVEGDSAGGSAK 438
Query: 419 QGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKI 478
QGRDR+FQAILPL+GKILN+E+ + +N+EI+ LI +G GV G++F + RY ++
Sbjct: 439 QGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAIGGGV-GDEFDIEKARYQRL 497
Query: 479 IILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLK 538
I++TDADVDGAHIRTLLLT YR+ R L + GY+Y PPLY+V + DEA+
Sbjct: 498 ILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEAERD 557
Query: 539 KLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMG 598
++ +QRFKGLGEM P QLW+TTM+PE R+LK++TVEDAA A+ +F+ LMG
Sbjct: 558 RIIEEECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMG 617
Query: 599 ARVDVRKELIQNAANMIDLDQLDI 622
V RK+ I++ AN D + +DI
Sbjct: 618 DAVGPRKQFIKDHAN--DAEWVDI 639
>GYRB_STRPN (P48373) DNA gyrase subunit B (EC 5.99.1.3)
Length = 648
Score = 583 bits (1504), Expect = e-166
Identities = 308/625 (49%), Positives = 423/625 (67%), Gaps = 17/625 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGST GLHHLV+EI+DN++DEA AGFAS I V + DDS+++ D+GRGIP D+
Sbjct: 33 MYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVFIEPDDSITVVDDGRGIPVDIQEK 92
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
T + A+ETV T+LHAGGKFGG GY VSGGLHGVG SVVNALS L+V V + G + Q
Sbjct: 93 TGRPAVETVFTVLHAGGKFGG--GGYKVSGGLHGVGSSVVNALSTQLDVHVHKNGKIHYQ 150
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y RG V L V + D+ GT + F PD ++FT F+++ + RI+ELAFLN
Sbjct: 151 EYRRGHVVADLEIV----GDTDKTGTTVHFTPDPKIFTETTIFDFDKLNKRIQELAFLNR 206
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRK-EIDGITVDIA 239
L I++ + E Q+ Y Y GG+A YV+++N +K + D + E+D ITV++A
Sbjct: 207 GLQISITDKRQGLE--QTKHYHYEGGIASYVEYINENKDVIFDTPIYTDGEMDDITVEVA 264
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
+Q+ Y + ++ +AN+I T +GGTH G + +LTR +N +K+K++K+ + L+GE
Sbjct: 265 MQYTT-GYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGED 323
Query: 300 VREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSK 359
VREGLT V+SVK PNP+FEGQTKT+LGN EV K+ ++ E +++L +P + ++ K
Sbjct: 324 VREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRIVEK 383
Query: 360 ALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQ 419
+ A KA +AAKRARE+ R+KS L S+LPGKLADCSS+NP + E+FIVEGDSAGGSAK
Sbjct: 384 GILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKS 443
Query: 420 GRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKII 479
GR+R FQAILP+RGKILN+E+ + NEEI++L +G G G +F RY K++
Sbjct: 444 GRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKARYQKLV 502
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQV-HYCYDEADLK 538
++TDADVDGAHIRTLLLT YRY + + + GY+Y+ PP+Y V G ++ Y AD +
Sbjct: 503 LMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGADQE 562
Query: 539 -KLKSSFA----PNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVF 593
KL+ + A +QR+KGLGEM QLWETTMDPE RL+ +++V+DAAEA+ +F
Sbjct: 563 IKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEADKIF 622
Query: 594 SSLMGARVDVRKELIQNAANMIDLD 618
LMG RV+ R+E I+ A LD
Sbjct: 623 DMLMGDRVEPRREFIEENAVYSTLD 647
>GYRB_BORBU (P33769) DNA gyrase subunit B (EC 5.99.1.3)
Length = 639
Score = 583 bits (1502), Expect = e-166
Identities = 308/626 (49%), Positives = 433/626 (68%), Gaps = 23/626 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGS GLHHLVYE++DN++DEA AGF +IDV+++ D+++++ DNGRGIPTD+H
Sbjct: 28 MYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIINLDNTITVIDNGRGIPTDIHEE 87
Query: 61 TKKSALETVLTILHAGGKFGGINSG-YSVSGGLHGVGLSVVNALSEALEVTVWREGLEYT 119
SALE VLT LH+GGKF N G Y VSGGLHGVG+SVVNALS LEV V R+G +
Sbjct: 88 EGISALELVLTKLHSGGKF---NKGTYKVSGGLHGVGISVVNALSSFLEVYVNRDGKIFR 144
Query: 120 QTYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLN 179
QT+S+G P + + V GT++ F D E+F T +++ ++ + R++ELAFLN
Sbjct: 145 QTFSKGIPTSKVEVV----GESSVTGTKVTFLADSEIFET-LDYNFDVLEKRLKELAFLN 199
Query: 180 PKLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEIDG----IT 235
K+ I++ ED K +S+++++ GG+ +V +L D KA + IDG +
Sbjct: 200 DKIYISI--EDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPYY---IDGFINDVI 254
Query: 236 VDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITL 295
V++ L+W E +YSD IL + N+I T +GGTH+ G ++ LT+ +N K SK+ K+ L
Sbjct: 255 VNVGLKWTE-SYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSKISKKDIPNL 313
Query: 296 SGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDS 355
+G+ +EGLT V+SVKVP P+FEGQTK++LGN E+RK+V+ + E+L E + L+P +D+
Sbjct: 314 TGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEIINLNPLEIDT 373
Query: 356 VLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGG 415
+L KA+ A +A AA++ARE R+K+ S +LPGKLADC+S NP + EI+IVEGDSAGG
Sbjct: 374 ILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIYIVEGDSAGG 433
Query: 416 SAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRY 475
SAK GR+R FQAILPL GK+LN+E+ E + N+++ +I LG GV G+ F LRY
Sbjct: 434 SAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGV-GKTFDITKLRY 492
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEA 535
HKIII+ DADVDG+HIRTLLL FF+RY R L + GYIY+ +PPLYK+ +++Y Y+E
Sbjct: 493 HKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEK 552
Query: 536 DLKKLKSSFAP--NASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVF 593
+ +K S S ++QR+KGLGEM P QLWETTMDP +R ++ + ++DA EA +F
Sbjct: 553 EKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIF 612
Query: 594 SSLMGARVDVRKELI-QNAANMIDLD 618
+LMG V+ RKE I QNA N+I+LD
Sbjct: 613 VTLMGDLVEPRKEFIEQNALNVINLD 638
>GYRB_TREDE (O87545) DNA gyrase subunit B (EC 5.99.1.3)
Length = 638
Score = 567 bits (1460), Expect = e-161
Identities = 298/623 (47%), Positives = 423/623 (67%), Gaps = 16/623 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGP GLHHLVYE++DN +DEA AGF KI VVL +D V + DNGRGIP D+HPT
Sbjct: 26 MYIGSTGPDGLHHLVYEVVDNCIDEAMAGFCDKILVVLEPNDIVRVEDNGRGIPVDIHPT 85
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
K SALE VLT LHAGGKF Y VSGGLHGVG+SVVNALS +E V+++G E+
Sbjct: 86 EKISALELVLTRLHAGGKFD--KGSYKVSGGLHGVGVSVVNALSVWMEAKVYKDGFEHYA 143
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
+ +G + + + ++ GT I++ D +FT + + +A R+RELAFLN
Sbjct: 144 KFEKGSILEPVKKI----GETEKSGTVIRWAVDPSIFTETTVYNFEVLATRLRELAFLNS 199
Query: 181 KLTIALRKED-NDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRK-EIDGITVDI 238
K++I +R E + P++V + + GG++++V +LN K+ F + E + I ++
Sbjct: 200 KISITMRDERLSTPKEVT---FAFEGGISQFVSYLNESKQVFPKSPVFIEGEKNDILCEV 256
Query: 239 ALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKK-SKVIK--EKDITL 295
A+Q+ D Y++ +L + N I T +GGTH++G K +LTR +N KK K++K +K+ L
Sbjct: 257 AIQY-NDGYNENLLSFVNDINTREGGTHLEGFKTALTRVMNDFLKKYPKLVKKMDKEEKL 315
Query: 296 SGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDS 355
+GE VR GLT +VSVKVP P+FEGQTKT+LGN +VR +VD + E LT + E +P+ ++
Sbjct: 316 TGEDVRAGLTAIVSVKVPEPQFEGQTKTKLGNSDVRGIVDSFVNEKLTLFFEQNPNEVEK 375
Query: 356 VLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGG 415
VL K + A +AA+RA+E R+KS L S LPGKLADCS +PE CE++IVEGDSAGG
Sbjct: 376 VLEKCVAEAAARIAARRAKEATRRKSGLDSFGLPGKLADCSLKDPESCEVYIVEGDSAGG 435
Query: 416 SAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRY 475
SAK+GRD + QAILPL GK+LN+E+ + NE++Q +I LG G+ G+DF + LRY
Sbjct: 436 SAKKGRDSKTQAILPLWGKMLNVEKTRLDKVVNNEKLQPIIATLGTGI-GKDFNIEKLRY 494
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEA 535
HK+II+ DADVDG+HIRTLLLTFF+RY + ++G++Y+ +PPLYK++ K+ Y Y++
Sbjct: 495 HKVIIMADADVDGSHIRTLLLTFFFRYMPQVIEKGHVYLAMPPLYKISHNKKEWYVYNDD 554
Query: 536 DLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSS 595
+ + + +QR+KGLGEM QLWETTMDP +R + ++T+ DA EA+ +FS+
Sbjct: 555 ERDSVLDQIGRGNNAAVQRYKGLGEMDGTQLWETTMDPARRKMMRVTLPDAVEADRIFST 614
Query: 596 LMGARVDVRKELIQNAANMIDLD 618
LMG V+ R++ I+ A +LD
Sbjct: 615 LMGEEVEPRRKFIEENAVYANLD 637
>GYRB_ARCFU (O29720) DNA gyrase subunit B (EC 5.99.1.3)
Length = 632
Score = 558 bits (1438), Expect = e-158
Identities = 307/622 (49%), Positives = 418/622 (66%), Gaps = 19/622 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIG G RGLHHL++E++DNAVDEA AG+ I V LH D S S+ DNGRGIPT+MH
Sbjct: 30 MYIGGVGVRGLHHLLWEVVDNAVDEALAGYCDTIKVSLHKDGSASVEDNGRGIPTEMHEL 89
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
K SALE V+T LHAGGKF Y VSGGLHGVG+SVVNALSE LEV V R G Y Q
Sbjct: 90 GK-SALEIVMTKLHAGGKFS--KKVYRVSGGLHGVGVSVVNALSEWLEVWVKRNGKIYYQ 146
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y RG GT ++F PD+E+F T EF+Y +A R++ELA+LN
Sbjct: 147 KYQRGSRSPEAGHRTEVLGETKEHGTTVRFKPDREIFETT-EFKYEIVAQRLKELAYLNR 205
Query: 181 KLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEIDGITVDIAL 240
L I L E E+ + + G+ V+ LN ++K +H+ + DG++V++A+
Sbjct: 206 GLKIILFDEREGKEET----FHFEDGIIGLVRSLNRNRKPLHEPIYIETTKDGVSVEVAI 261
Query: 241 QWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHV 300
Q+ D+ + I +AN+I T +GG+H+ G +A LTR +N GKK +K ++G +
Sbjct: 262 QFT-DSDVENIQAFANNINTSEGGSHVVGFRAGLTRAVNEYGKKHL---KKFEPVTGVDI 317
Query: 301 REGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKA 360
REGLT V+SVKVP P+FEGQTKT+L N +V+ VV+ ++ + +LE +P +++L+K
Sbjct: 318 REGLTAVISVKVPEPQFEGQTKTKLTNSDVKTVVESAVYSGVLRWLEENPAQAETLLNKF 377
Query: 361 LNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQG 420
+ KA AAKRA+ELV++K+ L ++LPGKLADCSS NPE+ E+FIVEG+SAGGSAKQ
Sbjct: 378 ILNKKAREAAKRAKELVKRKNEL-ITTLPGKLADCSSKNPEERELFIVEGESAGGSAKQA 436
Query: 421 RDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIII 480
RDRRFQAILP++GKI+N+E+ A + KN+EI+ +I +G G+ G+DF RY +III
Sbjct: 437 RDRRFQAILPIKGKIINVEKAGMARVLKNDEIKAIISAIGAGI-GKDFDITKARYRRIII 495
Query: 481 LTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLKKL 540
+TDADVDGAHIRTLLLTFFYRY R L + GY+Y+ PPLY++ +GK+ +Y Y + +LK+
Sbjct: 496 MTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYIAQPPLYQIKKGKKSYYAYSDEELKRT 555
Query: 541 KSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGAR 600
+QR+KGLGEM P QLWETTM+PE R+L ++T+EDA A+ +FS LMG
Sbjct: 556 LEQVGGG---EVQRYKGLGEMNPQQLWETTMNPENRILIQVTLEDAKRADELFSILMGED 612
Query: 601 VDVRKELIQNAANMIDLDQLDI 622
V+ R+ I A+ ++ LDI
Sbjct: 613 VESRRNFIM--AHSKEVKNLDI 632
>GYRB_TREPA (O08399) DNA gyrase subunit B (EC 5.99.1.3)
Length = 637
Score = 558 bits (1437), Expect = e-158
Identities = 301/625 (48%), Positives = 412/625 (65%), Gaps = 20/625 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTGP GLHHLVYE++DN +DEA AG+ +I VVL + V + DNGRGIP D+HP
Sbjct: 25 MYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITVVLEQGNVVRVEDNGRGIPVDVHPH 84
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
SALE VLT LHAGGKF Y VSGGLHGVG+SVVNALS +EVTV+R+G EY Q
Sbjct: 85 EGVSALEVVLTKLHAGGKFD--KKSYKVSGGLHGVGVSVVNALSLWVEVTVYRDGAEYYQ 142
Query: 121 TYSRGKPVTTLNCVMLPFENK---DRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAF 177
++ G P+ P E + +++GT I++ D +F + ++++ + R+RELAF
Sbjct: 143 KFNVGMPLA-------PVEKRGVSEKRGTIIRWQADPSIFKETVAYDFDVLLTRLRELAF 195
Query: 178 LNPKLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHD-VLSFRKEIDGITV 236
LN + I LR E K E+ + GG+ +V +LN K V + L + V
Sbjct: 196 LNSTVVIQLRDERLATAK--QVEFAFEGGIRHFVSYLNRGKSVVPERPLYIEGSKSDVLV 253
Query: 237 DIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKS-KVIK--EKDI 293
++ALQ+ D Y++ + + N I T +GGTH++G K++LTR N KKS K+ K E++
Sbjct: 254 EVALQY-HDGYTENVQSFVNDINTREGGTHLEGFKSALTRVANDFLKKSPKLAKKIEREE 312
Query: 294 TLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVL 353
L GE VR GLT V+SVK+P P+FEGQTKT+LGN EVR +VD + E LT Y E +P VL
Sbjct: 313 KLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIVDSLVGERLTLYFEQNPGVL 372
Query: 354 DSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSA 413
+L K++ +A LAA+RA+E R+KS + S LPGKLADCS +P CE++IVEGDSA
Sbjct: 373 TKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLPGKLADCSLKDPAKCEVYIVEGDSA 432
Query: 414 GGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDAL 473
GGSAK+GRD + QAILPL GK+LN+E+ + NE++Q +I LG GV G+DF +
Sbjct: 433 GGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQPIIATLGTGV-GKDFDLTRI 491
Query: 474 RYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYD 533
RYHK+II+ DADVDG+HIRTLLLTFF+RY + + GY+Y+ +PPLY++ K+ Y Y
Sbjct: 492 RYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLAMPPLYRIAWSKKELYVYS 551
Query: 534 EADLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVF 593
+ + + S + +QR+KGLGEM QLWETTM+P +R + ++ + DA EA+ VF
Sbjct: 552 DTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWETTMNPVRRKMMQVVLSDAVEADRVF 611
Query: 594 SSLMGARVDVRKELIQNAANMIDLD 618
S+LMG V+ R++ I+ A LD
Sbjct: 612 STLMGEDVEPRRKFIEENAIYARLD 636
>GYRB_BORHE (Q9ZFK1) DNA gyrase subunit B (EC 5.99.1.3)
Length = 634
Score = 553 bits (1426), Expect = e-157
Identities = 294/623 (47%), Positives = 424/623 (67%), Gaps = 17/623 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGS GLHHLVYE++DN++DEA AGF KI+VV+++D+SV++ DNGRGIPTD+H
Sbjct: 23 MYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVINSDNSVTVNDNGRGIPTDVHEE 82
Query: 61 TKKSALETVLTILHAGGKFGGINSG-YSVSGGLHGVGLSVVNALSEALEVTVWREGLEYT 119
SALE VLT LH+GGKF N G Y VSGGLHGVG+SVVNALS L V V R+G +
Sbjct: 83 EGISALELVLTKLHSGGKF---NKGTYKVSGGLHGVGISVVNALSSFLAVIVSRDGKLFK 139
Query: 120 QTYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLN 179
QTYSRG P + ++ + + +GT++ F D E+F T +E+++ T++ R+RELAFLN
Sbjct: 140 QTYSRGIPTSEVDIIGV----SSARGTKVTFLADSEIFET-LEYDFETLSKRLRELAFLN 194
Query: 180 PKLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRK-EIDGITVDI 238
K+ I++ ED K + E+++ GG+ +V ++ + K + + F + D + V +
Sbjct: 195 DKIRISI--EDRRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPYFIEGSCDDVIVSV 252
Query: 239 ALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGE 298
L+W E YSD IL + N+I T +GGTH+ G K+ + ++ + SK+ K+ +L+ +
Sbjct: 253 GLKWTE-GYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSKISKKDVPSLTLD 311
Query: 299 HVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLS 358
+EGLT V+S+K+P P+FEGQTK +LGN V+K+V+ + + L + ++ + +D +L+
Sbjct: 312 DFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLKVIDDNLLEVDIILN 371
Query: 359 KALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAK 418
KA+ A +A AA++ARE R+KS S +LPGKLADC+S NP + EI+IVEGDSAGGSAK
Sbjct: 372 KAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPAEREIYIVEGDSAGGSAK 431
Query: 419 QGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKI 478
GRDR QAILPL GK+LN+E+ E + N+++ +I LG GV G+ F + LRYHKI
Sbjct: 432 MGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGV-GKTFYIEKLRYHKI 490
Query: 479 IILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGKQVHYCYDEADLK 538
II+ DADVDG+HIRTLLLTFF+RY R L + G++Y+ +PPLYK+ + HY YD+ + +
Sbjct: 491 IIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKLKYENREHYFYDDLEKE 550
Query: 539 KLKSSF--APNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSL 596
S ++QR+KGLGEM P QLWETTM+P R +K + + DA +A +F +L
Sbjct: 551 AFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTL 610
Query: 597 MGARVDVRKELI-QNAANMIDLD 618
MG V+ R+E I QNA ++++LD
Sbjct: 611 MGDDVEPRREFIEQNALDVVNLD 633
>GYBS_STRSH (P50075) DNA gyrase subunit B, novobiocin-sensitive (EC
5.99.1.3)
Length = 684
Score = 551 bits (1419), Expect = e-156
Identities = 305/651 (46%), Positives = 421/651 (63%), Gaps = 41/651 (6%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLV E++DN+VDEA AG A IDV + AD V + DNGRGIP + P+
Sbjct: 46 MYIGSTGERGLHHLVTEVVDNSVDEALAGHADTIDVTILADGGVRVVDNGRGIPVGIVPS 105
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
K A+E VLT+LHAGGKFGG GYSVSGGLHGVG+SVVNALS + V V +G +TQ
Sbjct: 106 EGKPAVEVVLTVLHAGGKFGG--GGYSVSGGLHGVGVSVVNALSTKVAVEVKTDGYRWTQ 163
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y G P T C E D GT + FW D +VF T E+ + T++ R +E+AFLN
Sbjct: 164 DYKLGVP--TRRCAQN--EATDETGTTVTFWADPDVFETT-EYSFETLSRRFQEMAFLNK 218
Query: 181 KLTIALRKEDNDP-------------------EKVQSNEYFYAGGLAEYVQFLNTDK--- 218
LT+ L E E V+S Y+Y GG+ ++V++LN+ K
Sbjct: 219 GLTLKLTDERESAKAVVGADVAGTDSAETPGEEPVRSVTYYYEGGIVDFVKYLNSRKGDL 278
Query: 219 --KAVHDVLSFRKEIDGITVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTR 276
V D+ + KE ++V+IA+QW YS+ + +AN+I T +GGTH +G +A++T
Sbjct: 279 IHPTVIDIDAEDKE-RMLSVEIAMQW-NSQYSEGVYSFANTIHTHEGGTHEEGFRAAMTG 336
Query: 277 TLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQ 336
+N ++ K ++EKD L+GE +REGLT ++SVK+ P+FEGQTKT+LGN E + V +
Sbjct: 337 LVNRYAREKKFLREKDDNLAGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQK 396
Query: 337 SIQEYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCS 396
+ E+LT++ + HP+ ++ K++ A A +AA++AR+L R+K +L S+SLPGKL+DC
Sbjct: 397 IVHEHLTDWFDRHPNEAADIIRKSIQAATARVAARKARDLTRRKGLLESASLPGKLSDCQ 456
Query: 397 SSNPEDCEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLI 456
S++P CEIFIVEGDSAGGSAK GR+ ++QAILP+RGKILN+E+ + +N E+Q LI
Sbjct: 457 SNDPSKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDKILQNTEVQALI 516
Query: 457 LGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGV 516
G GV EDF + LRYHKII++ DADVDG HI TLLLTF +R+ R L + G++Y+
Sbjct: 517 SAFGTGVH-EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVYLSR 575
Query: 517 PPLYKVTRGK-QVHYCYDEADLKKLKSSFAPNASY----NMQRFKGLGEMMPLQLWETTM 571
PPLYK+ G+ Y Y + + L N ++QRFKGLGEM +L TTM
Sbjct: 576 PPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDSIQRFKGLGEMNAEELRITTM 635
Query: 572 DPEQRLLKKLTVEDAAEANIVFSSLMGARVDVRKELIQNAANMIDLDQLDI 622
D + R+L ++T++DAA+A+ +FS LMG V+ R+ IQ N D+ LDI
Sbjct: 636 DVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQR--NAKDVRFLDI 684
>GYBR_STRSH (P50074) DNA gyrase subunit B, novobiocin-resistant (EC
5.99.1.3)
Length = 677
Score = 547 bits (1410), Expect = e-155
Identities = 302/644 (46%), Positives = 420/644 (64%), Gaps = 34/644 (5%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLV E++DN+VDEA AG A +IDV + AD V + DNGRGIP MHP
Sbjct: 46 MYIGSTGERGLHHLVQELVDNSVDEALAGVADRIDVTVLADGGVRVVDNGRGIPVGMHPV 105
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
K+ A+E VLT+LHAGGKFGG GY VSGGLHGVGLSVVNALS L +W +G +TQ
Sbjct: 106 EKRPAVEVVLTVLHAGGKFGG--GGYGVSGGLHGVGLSVVNALSTRLSAEIWTDGHRWTQ 163
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y G P L E R GT + FW D ++F T E+ + T+A R +E+AFLN
Sbjct: 164 DYRDGAPTAPL----ARHEATSRTGTSLTFWADGDIFETT-EYSFETLARRHQEMAFLNG 218
Query: 181 KLTIALRKE-------------DNDPEKVQSNEYFYAGGLAEYVQFLNTDK--KAVHDVL 225
LT+ L E D+DP ++ Y Y GG+ ++V LN K A V+
Sbjct: 219 GLTLTLTDERSSARATAAVDEADSDPT-AKTVSYRYDGGITDFVVHLNARKGEPAHPSVI 277
Query: 226 SFRKEIDG--ITVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGK 283
+ E ++ +IALQW Y+D++ YAN+I T +GGTH +G + +LT +N +
Sbjct: 278 TIAAEDTERLLSAEIALQW-NGQYTDSVYSYANAIHTHEGGTHEEGFRTALTTVVNRYAR 336
Query: 284 KSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLT 343
+ +++++KD LSGE +REGLT ++SV V P+FEGQTKT+LGN EVR ++ + + E+L
Sbjct: 337 EKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLGNTEVRTLLQKIVHEHLA 396
Query: 344 EYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDC 403
++ + +P+ ++ KA+ A A +AA++AR+L R+K +L +++LPGKL+DC S++P
Sbjct: 397 DWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETAALPGKLSDCQSNDPATS 456
Query: 404 EIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGV 463
EIFIVEGDSAGGSAK GR+ ++QAILP+RGKILN+E+ + +N+E Q LI G GV
Sbjct: 457 EIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKVLQNQENQALISAFGTGV 516
Query: 464 KGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVT 523
EDF LRYHKII++ DADVDG HI TLLLTF +R+ R L +EG++++ PPLYK+
Sbjct: 517 H-EDFDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLVEEGHVHLSRPPLYKIK 575
Query: 524 RGKQ-VHYCYDEAD----LKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLL 578
++ V Y Y + + L++ + ++QRFKGLGEM +L TTMDP+ R+L
Sbjct: 576 WSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKGLGEMNAEELRVTTMDPDHRVL 635
Query: 579 KKLTVEDAAEANIVFSSLMGARVDVRKELIQNAANMIDLDQLDI 622
++T++DAA A+ +FS LMG V+ R+ IQ N D+ LDI
Sbjct: 636 GQVTLDDAAFADDLFSVLMGEDVEARRHFIQR--NAQDVRFLDI 677
>GYRB_STRCO (P35886) DNA gyrase subunit B (EC 5.99.1.3)
Length = 686
Score = 544 bits (1402), Expect = e-154
Identities = 295/645 (45%), Positives = 421/645 (64%), Gaps = 34/645 (5%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGSTG RGLHHLV E++DN+VDEA AG A IDV + D V + DNGRGIP + P+
Sbjct: 53 MYIGSTGERGLHHLVQEVVDNSVDEALAGHADTIDVTILPDGGVRVVDNGRGIPVGIVPS 112
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
K A+E VLT+LHAGGKFGG GY+VSGGLHGVG+SVVNALS + V V +G +TQ
Sbjct: 113 EGKPAVEVVLTVLHAGGKFGG--GGYAVSGGLHGVGVSVVNALSTRVAVEVKTDGYRWTQ 170
Query: 121 TYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLNP 180
Y G P +L E + GT + FW D ++F T ++ + T++ R +E+AFLN
Sbjct: 171 EYKLGVPTASL----ARHEATEETGTTVTFWADGDIFETT-DYSFETLSRRFQEMAFLNK 225
Query: 181 KLTIALRKE--------------DNDPEKVQSNEYFYAGGLAEYVQFLNTDK-KAVHDV- 224
L I L E +++ +V+S Y Y GG+ ++V +LN+ K + VH
Sbjct: 226 GLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGIVDFVTYLNSRKGELVHPTV 285
Query: 225 --LSFRKEIDGITVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLG 282
L + +++++A+QW Y++ + +AN I T +GGTH +G +A+LT +N
Sbjct: 286 IDLEAEDKDKSLSLEVAMQW-NGGYTEGVYSFANIIHTHEGGTHEEGFRAALTSLINKYA 344
Query: 283 KKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYL 342
+ K+++EKD L+G+ +REGLT ++SVK+ P+FEGQTKT+LGN EV+ V + + E+L
Sbjct: 345 RDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEVKTFVQKVVYEHL 404
Query: 343 TEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPED 402
T++L+ +P+ ++ K + A A +AA++AR+L R+K +L S+SLPGKL+DC S++P
Sbjct: 405 TDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRKGLLESASLPGKLSDCQSNDPTK 464
Query: 403 CEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLG 462
CEIFIVEGDSAGGSAK GR+ ++QAILP+RGKILN+E+ + +N+EIQ +I G G
Sbjct: 465 CEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDRILQNQEIQAMISAFGTG 524
Query: 463 VKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKV 522
V EDF + LRYHKII++ DADVDG HI TLLLTF +R+ R L + G++Y+ PPLYK+
Sbjct: 525 VH-EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVESGHVYLSRPPLYKI 583
Query: 523 TRGK-QVHYCYDEADLKKL----KSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRL 577
G+ Y Y + + L + + ++QRFKGLGEM +L TTMD E R+
Sbjct: 584 KWGRDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRV 643
Query: 578 LKKLTVEDAAEANIVFSSLMGARVDVRKELIQNAANMIDLDQLDI 622
L ++T++DAA+A+ +FS LMG V+ R+ IQ N D+ LDI
Sbjct: 644 LGQVTLDDAAQADDLFSVLMGEDVEARRAFIQR--NAKDVRFLDI 686
>PARE_STRPN (Q59961) Topoisomerase IV subunit B (EC 5.99.1.-)
Length = 647
Score = 535 bits (1377), Expect = e-151
Identities = 293/619 (47%), Positives = 412/619 (66%), Gaps = 23/619 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSIADNGRGIPTDMHPT 60
MYIGST GLHHLV+EI+DNAVDEA +GF +IDV ++ D S+++ D+GRG+PT MH
Sbjct: 31 MYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGMHAM 90
Query: 61 TKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQ 120
+ +E + TILHAGGKFG GY SGGLHGVG SVVNALS LEV + R+G Y Q
Sbjct: 91 GIPT-VEVIFTILHAGGKFG--QGGYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQ 147
Query: 121 TYSRG-KPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIEFEYNTIAGRIRELAFLN 179
+ G KPVTTL + K + GT++ F PD +F+T +F+YNTI+ R+ E AFL
Sbjct: 148 RFENGGKPVTTLK--KIGTAPKSKTGTKVTFMPDATIFSTT-DFKYNTISERLNESAFLL 204
Query: 180 PKLTIALRKEDNDPEKVQSNEYFYAGGLAEYVQFLNTDKKAVHDVLSFRKEIDGITVDIA 239
+T++L D ++ E+ Y G+ ++V +LN DK+ + VL F E +G V++A
Sbjct: 205 KNVTLSL----TDKRTNEAIEFHYENGVQDFVSYLNEDKEILTPVLYFEGEDNGFQVEVA 260
Query: 240 LQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEH 299
LQ+ D +SD IL + N++RT DGGTH G+K+++T+ +N +K+ ++KEKD L G
Sbjct: 261 LQY-NDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARKTGLLKEKDKNLEGSD 319
Query: 300 VREGLTCVVSVKVPNP--EFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVL 357
REGL V+S+ VP +FEGQTK +LG+P R VVD + + LT +L + ++ +++
Sbjct: 320 YREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKLTFFLMENGELASNLI 379
Query: 358 SKALNAFKAALAAKRARELVR--QKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGG 415
KA+ A A AA++AR+ R +K+ L GKL S NP E+++VEGDSAGG
Sbjct: 380 RKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGG 439
Query: 416 SAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRY 475
SAKQGRDR+FQAILPLRGK++N + A + KNEEI +I +G GV G DF + Y
Sbjct: 440 SAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEEINTMIYTIGAGV-GADFSIEDANY 498
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVTRGK----QVHYC 531
KIII+TDAD DGAHI+TLLLTFFYRY R L + G++Y+ +PPLYK+++GK +V Y
Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558
Query: 532 YDEADLKKLKSSFAPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANI 591
+ + +L++L+ F A+ +QR+KGLGEM QLWETTM+PE R L ++T+ED A A
Sbjct: 559 WTDGELEELRKQFGKGAT--LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAER 616
Query: 592 VFSSLMGARVDVRKELIQN 610
+ LMG +V+ R++ I++
Sbjct: 617 RVNVLMGDKVEPRRKWIED 635
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,705,563
Number of Sequences: 164201
Number of extensions: 3081539
Number of successful extensions: 9535
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 8709
Number of HSP's gapped (non-prelim): 195
length of query: 622
length of database: 59,974,054
effective HSP length: 116
effective length of query: 506
effective length of database: 40,926,738
effective search space: 20708929428
effective search space used: 20708929428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
Medicago: description of AC122169.6