BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122166.12 - phase: 0 /pseudo
         (170 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MXIK_SHIFL (Q06082) MxiK protein                                       30  2.1
YP2B_STAAU (P12052) Hypothetical 27.0 kDa protein (ORFD)               29  4.6
RRPO_LVX (P27327) RNA replication protein (ORF 1) [Contains: RNA...    29  6.0

>MXIK_SHIFL (Q06082) MxiK protein
          Length = 175

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 15  AWRLLRDRLPTKSNLVYRGVIPSEA-GLCVSG*GVLESAQHLFLSCSYFALLWSLVRDWI 73
           A+ + R+RL   S L+  GVI SE   L ++   +    + L    + F   W+L+    
Sbjct: 19  AFYINRNRLNLPSELLENGVIRSEINNLIINKYDLNCDIEPLSGVTAMFVANWNLLPAVA 78

Query: 74  GFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQL---IWLLCAW-----VLWTERNNMCFN 125
            F+G   + L +H    +   GG  + Q    +    W L AW     V   ER N+ FN
Sbjct: 79  YFIGSQESRLINHSEMVISYYGGKISKQGEAAIRSGFWHLIAWKENISVGIYERINLLFN 138


>YP2B_STAAU (P12052) Hypothetical 27.0 kDa protein (ORFD)
          Length = 229

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/49 (32%), Positives = 29/49 (58%), Gaps = 8/49 (16%)

Query: 62  FALLWSLVRDWIGFVGVDTNVLSDHFVQFVHSTGGSKASQSFLQLIWLL 110
           FAL+ ++ RD++GF+ VD  VL +     +      KAS+ F+ ++W +
Sbjct: 163 FALIMTIGRDFMGFLHVD--VLQNAIASKI------KASEGFISVLWYI 203


>RRPO_LVX (P27327) RNA replication protein (ORF 1) [Contains:
           RNA-directed RNA polymerase (EC 2.7.7.48); Probable
           helicase] (Fragment)
          Length = 162

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 4/48 (8%)

Query: 15  AWRLLRDRLPTKSNLVYRGVIPSE----AGLCVSG*GVLESAQHLFLS 58
           ++RL+ DR+  KS  V    +P E     G CV+  G+++  + LF S
Sbjct: 53  SFRLIADRIELKSKEVTHTQVPGEYATFCGWCVTPKGIIKEPRKLFAS 100


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.331    0.143    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,285,033
Number of Sequences: 164201
Number of extensions: 807173
Number of successful extensions: 1615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1615
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 59,974,054
effective HSP length: 102
effective length of query: 68
effective length of database: 43,225,552
effective search space: 2939337536
effective search space used: 2939337536
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 62 (28.5 bits)