BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122163.2 + phase: 0
(428 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
APC_RAT (P70478) Adenomatous polyposis coli protein (APC protein) 42 0.004
PCX_DROME (P18490) Pecanex protein 40 0.011
CA11_MOUSE (P11087) Collagen alpha 1(I) chain precursor 39 0.020
APC_HUMAN (P25054) Adenomatous polyposis coli protein (APC protein) 39 0.033
CA11_BOVIN (P02453) Collagen alpha 1(I) chain (Fragments) 38 0.057
SGG_DROME (P18431) Protein kinase shaggy (EC 2.7.1.37) (Protein ... 37 0.074
CA25_HUMAN (P05997) Collagen alpha 2(V) chain precursor 37 0.074
PM1_SOYBN (Q01417) 18 kDa seed maturation protein 37 0.097
APMU_PIG (P12021) Apomucin (Mucin core protein) (Fragment) 37 0.097
PG46_MYCTU (P71933) Hypothetical PE-PGRS family protein PE_PGRS46 36 0.22
LIE2_STREX (P83913) Leupeptin-inactivating enzyme 2 precursor (E... 35 0.37
APC_MOUSE (Q61315) Adenomatous polyposis coli protein (APC prote... 35 0.37
CYS4_DICDI (P54639) Cysteine proteinase 4 precursor (EC 3.4.22.-) 35 0.48
SER1_GALME (O96614) Sericin-1 (Silk gum protein 1) (Fragment) 34 0.63
NTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3 pre... 34 0.63
IE18_PRVKA (P33479) Immediate-early protein IE180 34 0.63
FIB1_PETMA (P02674) Fibrinogen alpha-1 chain precursor [Contains... 34 0.63
CA13_BOVIN (P04258) Collagen alpha 1(III) chain 34 0.63
VATA_PYRAE (Q8ZYR1) V-type ATP synthase alpha chain (EC 3.6.3.14... 34 0.82
CA11_HUMAN (P02452) Collagen alpha 1(I) chain precursor 34 0.82
>APC_RAT (P70478) Adenomatous polyposis coli protein (APC protein)
Length = 2842
Score = 41.6 bits (96), Expect = 0.004
Identities = 33/127 (25%), Positives = 48/127 (36%), Gaps = 3/127 (2%)
Query: 19 RPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGPAR- 77
+P E P T + + + P +SG P P S P S + S P R
Sbjct: 2275 KPAVKSELSPITRQTSHISGSNKGPSRSGSRDSTPSRPTQQPLSRPMQSPGRNSISPGRN 2334
Query: 78 --SRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGSGPVGASRRSGQLEQS 135
S PN + T S KS+GSG ++ G S S G S+ + + +S
Sbjct: 2335 GISTPNKLSQLPRTSSPSTASTKSSGSGKMSYTSPGRQLSQQNLSKQTGLSKNASSIPRS 2394
Query: 136 GSMGKAV 142
S K +
Sbjct: 2395 ESASKGL 2401
>PCX_DROME (P18490) Pecanex protein
Length = 2483
Score = 40.0 bits (92), Expect = 0.011
Identities = 40/138 (28%), Positives = 54/138 (38%), Gaps = 7/138 (5%)
Query: 2 GTRIPSHQLSSGLYVSGRPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPK 61
G P+ SSG S RPE R ++P G GE GK L P +
Sbjct: 1993 GASGPTRATSSGGVRSRRPEVGSSRGRDHERRATLPIASGGA--GGEPGKDLTAPQTQVE 2050
Query: 62 SHPSSSSSQLSTGPARSRPNSG-QVGKNITGSGTLSRKSTGSGPIALQPTGLITSG---- 116
PS S++LS+ G +G IT G RK+ G + TG +S
Sbjct: 2051 HEPSPRSTKLSSSSGSLGLGMGVGLGNIITTPGDYPRKTKGPICLTAVDTGTSSSAAEGK 2110
Query: 117 PVGSGPVGASRRSGQLEQ 134
P GSG V + G + +
Sbjct: 2111 PAGSGTVAGTGVGGVIRK 2128
>CA11_MOUSE (P11087) Collagen alpha 1(I) chain precursor
Length = 1453
Score = 39.3 bits (90), Expect = 0.020
Identities = 38/131 (29%), Positives = 51/131 (38%), Gaps = 8/131 (6%)
Query: 17 SGRPEQPKERQPP-TMASRSVPYTGGDPKKSGEL------GKMLDIPVLDPKSHPSSSSS 69
+G+P +P ER PP +R +P T G P G G D PK P S
Sbjct: 224 AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGE 283
Query: 70 QLSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVG-SGPVGASRR 128
+ G R G+ G+ +R + G+ A P +GP G G VGA
Sbjct: 284 NGAPGQMGPRGLPGERGRPGPPGTAGARGNDGAVGAAGPPGPTGPTGPPGFPGAVGAKGE 343
Query: 129 SGQLEQSGSMG 139
+G GS G
Sbjct: 344 AGPQGARGSEG 354
Score = 31.2 bits (69), Expect = 5.3
Identities = 33/127 (25%), Positives = 46/127 (35%), Gaps = 12/127 (9%)
Query: 16 VSGRPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGP 75
V G P Q ER P +P G+P K G G + P P + +G
Sbjct: 949 VVGLPGQRGERGFP-----GLPGPSGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGR 1003
Query: 76 ARSRPNSGQVGKNITGSGTLSRKSTG-SGPIALQPTGLITSGPVGSGPVGASRRSGQLEQ 134
S G G++ R TG +GP P GPVG + ++G +
Sbjct: 1004 EGSPGAEGSPGRDGAPGAKGDRGETGPAGPPG------APGAPGAPGPVGPAGKNGDRGE 1057
Query: 135 SGSMGKA 141
+G G A
Sbjct: 1058 TGPAGPA 1064
>APC_HUMAN (P25054) Adenomatous polyposis coli protein (APC protein)
Length = 2843
Score = 38.5 bits (88), Expect = 0.033
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 6/132 (4%)
Query: 17 SGRPEQPKERQPPTMASRSVPYTGGD---PKKSGELGKMLDIPVLDPKSHPSSSSSQLST 73
S R +P + + +R GG P +SG P P S P S + S
Sbjct: 2270 SPRGAKPSVKSELSPVARQTSQIGGSSKAPSRSGSRDSTPSRPAQQPLSRPIQSPGRNSI 2329
Query: 74 GPAR---SRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGSGPVGASRRSG 130
P R S PN + T S KS+GSG ++ G S + G S+ +
Sbjct: 2330 SPGRNGISPPNKLSQLPRTSSPSTASTKSSGSGKMSYTSPGRQMSQQNLTKQTGLSKNAS 2389
Query: 131 QLEQSGSMGKAV 142
+ +S S K +
Sbjct: 2390 SIPRSESASKGL 2401
>CA11_BOVIN (P02453) Collagen alpha 1(I) chain (Fragments)
Length = 779
Score = 37.7 bits (86), Expect = 0.057
Identities = 39/136 (28%), Positives = 51/136 (36%), Gaps = 15/136 (11%)
Query: 17 SGRPEQPKERQPP-TMASRSVPYTGGDPKKSGEL------GKMLDIPVLDPKSHPSSSSS 69
+G+P +P ER PP +R +P T G P G G D PK P S
Sbjct: 73 AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGE 132
Query: 70 QLSTGPARSRPNSGQVG-KNITGS-GTLSRKSTGSGPIALQPTGLITSGPVGS----GPV 123
+ G R G G K G G + P A+ P G G G+ GP
Sbjct: 133 NGAPGQMGPRGLPGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG--KDGEAGAQGPPGPA 190
Query: 124 GASRRSGQLEQSGSMG 139
G + G+ +GS G
Sbjct: 191 GPAGERGEQGPAGSPG 206
Score = 30.4 bits (67), Expect = 9.1
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 16 VSGRPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGP 75
V G P Q ER P +P G+P K G G + P P + +G
Sbjct: 522 VVGLPGQRGERGFP-----GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGR 576
Query: 76 ARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGSGPVGASRRSGQLEQS 135
+ G G++ + R TG P P GPVG + +SG ++
Sbjct: 577 EGAPGAEGSPGRDGSPGAKGDRGETGPAGAPGPP-----GAPGAPGPVGPAGKSGDRGET 631
Query: 136 GSMG 139
G G
Sbjct: 632 GPAG 635
>SGG_DROME (P18431) Protein kinase shaggy (EC 2.7.1.37) (Protein
zeste-white 3)
Length = 1067
Score = 37.4 bits (85), Expect = 0.074
Identities = 25/70 (35%), Positives = 36/70 (50%), Gaps = 4/70 (5%)
Query: 70 QLSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPI---ALQPTGLITSGPVGSGPVGAS 126
Q ++GP +RP++G +I SG+ S STGSG + QP T+ GSG GA+
Sbjct: 935 QNASGPGGNRPSAGGAA-SIAASGSTSVSSTGSGASVEGSAQPQSQGTAAAAGSGSGGAT 993
Query: 127 RRSGQLEQSG 136
+G G
Sbjct: 994 AGTGGASAGG 1003
>CA25_HUMAN (P05997) Collagen alpha 2(V) chain precursor
Length = 1496
Score = 37.4 bits (85), Expect = 0.074
Identities = 38/126 (30%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 16 VSGRPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGP 75
+ G P Q ER P +P G P K G G D P P S+ GP
Sbjct: 991 IVGMPGQRGERGMP-----GLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGP 1045
Query: 76 ARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITS--GPVGSGPVGASRRSGQLE 133
N G G++ G + + P P GL S P GPVGA +GQ
Sbjct: 1046 EGPAGNDGTPGRD----GAVGERGDRGDP---GPAGLPGSQGAPGTPGPVGAPGDAGQRG 1098
Query: 134 QSGSMG 139
GS G
Sbjct: 1099 DPGSRG 1104
>PM1_SOYBN (Q01417) 18 kDa seed maturation protein
Length = 173
Score = 37.0 bits (84), Expect = 0.097
Identities = 32/124 (25%), Positives = 51/124 (40%), Gaps = 19/124 (15%)
Query: 25 ERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGPARSRPNSGQ 84
E+ T+ ++ T DP + EL ++ ++ Q +T +S +G
Sbjct: 27 EKTKATVQEKAERMTARDPVQK-ELATQKKEAKMNQAELDKQAARQHNTAAKQSATTAGH 85
Query: 85 VGKNI----TGSGTLSRKSTGS--------------GPIALQPTGLITSGPVGSGPVGAS 126
+G TG+GT + +TG G QPTG +T G VGS P+G +
Sbjct: 86 MGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAMPGHGTGQPTGHVTEGVVGSHPIGTN 145
Query: 127 RRSG 130
R G
Sbjct: 146 RGPG 149
>APMU_PIG (P12021) Apomucin (Mucin core protein) (Fragment)
Length = 1150
Score = 37.0 bits (84), Expect = 0.097
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 65 SSSSSQLSTGPARSRPNSGQVGKNITGS-GTLSRKSTGSGPIALQPTGLITSGPVGSGPV 123
+S S+ +STGP S P + + G T S G + ++T + G+ + GSG V
Sbjct: 803 TSRSTGISTGPENSTPGTTETGSGTTSSPGGVKTEATTFKGVGTTEAGISSGNSPGSGGV 862
Query: 124 GASRRSGQLEQS-GSMGKAVYGSAVTSLGEEVKVGFRVS 161
+S+ E S + + + TS+ +E+ +VS
Sbjct: 863 TSSQEGTSREASETTTAPRISATGSTSVSKEITASPKVS 901
>PG46_MYCTU (P71933) Hypothetical PE-PGRS family protein PE_PGRS46
Length = 778
Score = 35.8 bits (81), Expect = 0.22
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 41 GDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGPARSRPNSGQVGKNITGSGTLSRKST 100
G P +G LG M +++ +G A + +G G N G+++ +T
Sbjct: 337 GGPAVAGVLGGM------PGAGGNGGNANWFGSGGAGGQGGTGLAGTNGVNPGSIANPNT 390
Query: 101 GSGPIALQPTGLITSGPVGSGPVGASRRSGQLEQSGSMGKAVYGS 145
G+ G T G G GP G +G + G +G+++ G+
Sbjct: 391 GANGTDNSGNGNQTGGNGGPGPAGGVGEAGGVGGQGGLGESLDGN 435
>LIE2_STREX (P83913) Leupeptin-inactivating enzyme 2 precursor (EC
3.4.24.-) (LIE2)
Length = 1090
Score = 35.0 bits (79), Expect = 0.37
Identities = 35/96 (36%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 58 LDPKSHPSSSSSQLSTGPARSRPNSGQVGKNITGSGTLSRKSTGS----GPIALQPTGLI 113
L P S S SSS LS S G +TGSGT+S ST S G + P L+
Sbjct: 959 LSPTSVQSGSSSALSVQVGASTA-PGTYTLTVTGSGTVSHTSTYSLTVTGGGSCTPRQLV 1017
Query: 114 TSGPVGSGPVGASRRSGQLEQSGSMGKAVYGSAVTS 149
T+G SG S +GQ ++ S A G A S
Sbjct: 1018 TNGGFESGSSPWSATAGQTLETLSNLNANSGYAEKS 1053
>APC_MOUSE (Q61315) Adenomatous polyposis coli protein (APC protein)
(mAPC)
Length = 2845
Score = 35.0 bits (79), Expect = 0.37
Identities = 30/127 (23%), Positives = 46/127 (35%), Gaps = 3/127 (2%)
Query: 19 RPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGPAR- 77
+P E P T + + + +SG P P S P S + S P R
Sbjct: 2275 KPAGKSELSPITRQTSQISGSNKGSSRSGSRDSTPSRPTQQPLSRPMQSPGRNSISPGRN 2334
Query: 78 --SRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGSGPVGASRRSGQLEQS 135
S PN + T S KS+GSG ++ G S + S+ + + +S
Sbjct: 2335 GISPPNKLSQLPRTSSPSTASTKSSGSGKMSYTSPGRQLSQQNLTKQASLSKNASSIPRS 2394
Query: 136 GSMGKAV 142
S K +
Sbjct: 2395 ESASKGL 2401
>CYS4_DICDI (P54639) Cysteine proteinase 4 precursor (EC 3.4.22.-)
Length = 442
Score = 34.7 bits (78), Expect = 0.48
Identities = 39/122 (31%), Positives = 47/122 (37%), Gaps = 10/122 (8%)
Query: 33 SRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGPARSRPNSGQVGKNITGS 92
S S TGG S GK SSSSS T A S + Q G S
Sbjct: 299 SSSSSSTGGKTSSSSSSGKASS----SSSGKASSSSSSGKTSSAASSTSGSQSGSQ---S 351
Query: 93 GTLSRKSTGSGPIALQPTGLITSGPVGSGP---VGASRRSGQLEQSGSMGKAVYGSAVTS 149
G+ S +STGS +G ++ GSG G+ SG +E S V S TS
Sbjct: 352 GSQSGQSTGSQSGQTSASGQASASGSGSGSGSGSGSGSGSGAVEASSGNYWIVKNSWGTS 411
Query: 150 LG 151
G
Sbjct: 412 WG 413
Score = 32.3 bits (72), Expect = 2.4
Identities = 35/119 (29%), Positives = 48/119 (39%), Gaps = 4/119 (3%)
Query: 36 VPYTGGDPKKSGEL-GKMLDIPVLDPKSHPSSSSSQLSTGPARSRPNSGQVGKNITGSGT 94
V Y G SG GK K+ SSSS + S+ + +S GK + + +
Sbjct: 282 VGYGSGSSSSSGSSSGKSSSSSSTGGKTSSSSSSGKASSSSSGKASSSSSSGKTSSAASS 341
Query: 95 LSRKSTG--SGPIALQPTGLITSGPVGSGPVGASRRSGQLEQSGSMGKAVYGSAVTSLG 151
S +G SG + Q TG + SG AS SG SGS + G+ S G
Sbjct: 342 TSGSQSGSQSGSQSGQSTGSQSGQTSASGQASAS-GSGSGSGSGSGSGSGSGAVEASSG 399
>SER1_GALME (O96614) Sericin-1 (Silk gum protein 1) (Fragment)
Length = 115
Score = 34.3 bits (77), Expect = 0.63
Identities = 29/87 (33%), Positives = 42/87 (47%), Gaps = 1/87 (1%)
Query: 66 SSSSQLSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGS-GPVG 124
SS S S+G + S +SG G + + + S S+GS + +SG GS G G
Sbjct: 5 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 64
Query: 125 ASRRSGQLEQSGSMGKAVYGSAVTSLG 151
+S SG SGS G + S+ +S G
Sbjct: 65 SSGSSGSSGSSGSSGSSGSSSSSSSNG 91
Score = 32.0 bits (71), Expect = 3.1
Identities = 26/77 (33%), Positives = 37/77 (47%), Gaps = 1/77 (1%)
Query: 66 SSSSQLSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGS-GPVG 124
SS S S+G + S +SG G + + + S S+GS + +SG GS G G
Sbjct: 2 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 61
Query: 125 ASRRSGQLEQSGSMGKA 141
+S SG SGS G +
Sbjct: 62 SSGSSGSSGSSGSSGSS 78
Score = 31.6 bits (70), Expect = 4.1
Identities = 28/93 (30%), Positives = 41/93 (43%), Gaps = 1/93 (1%)
Query: 66 SSSSQLSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGS-GPVG 124
SS S S+G + S +SG G + + + S S+GS + +SG GS G G
Sbjct: 11 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 70
Query: 125 ASRRSGQLEQSGSMGKAVYGSAVTSLGEEVKVG 157
+S SG SGS + + +S G G
Sbjct: 71 SSGSSGSSGSSGSSSSSSSNGSGSSSGSSQSSG 103
Score = 31.2 bits (69), Expect = 5.3
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 66 SSSSQLSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGS-GPVG 124
SS S S+G + S +SG G + + + S S+GS + +SG GS G G
Sbjct: 17 SSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSGSSG 76
Query: 125 ASRRSGQLEQSGSMGKAVYGSAVTSLGEE 153
+S SG S S G + S G +
Sbjct: 77 SSGSSGSSSSSSSNGSGSSSGSSQSSGSQ 105
>NTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3
precursor (Notch 3)
Length = 2318
Score = 34.3 bits (77), Expect = 0.63
Identities = 26/94 (27%), Positives = 38/94 (39%), Gaps = 5/94 (5%)
Query: 18 GRPEQPKERQPPTMAS--RSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGP 75
G P P+ER PP +A+ Y + S + L +P P PS S + P
Sbjct: 2199 GAPVSPQERPPPYLAAPGHGEEYPAAGTRSSPTKARFLRVPSEHPYLTPSPESPEHWASP 2258
Query: 76 ARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQP 109
+ P S + T S + +T SG + QP
Sbjct: 2259 S---PPSLSDWSDSTPSPATATNATASGALPAQP 2289
>IE18_PRVKA (P33479) Immediate-early protein IE180
Length = 1446
Score = 34.3 bits (77), Expect = 0.63
Identities = 45/176 (25%), Positives = 62/176 (34%), Gaps = 47/176 (26%)
Query: 23 PKERQPPTMASRSVPYTGGDPKKSGELGK--------MLDIPV----LDPK--------- 61
P P S P GG P G+ G+ +LD P LDP+
Sbjct: 228 PASPASPAAGPVSAPGGGGAPSAGGDRGRHHHQHREPLLDEPAAARRLDPRPLGARSPVS 287
Query: 62 SHPSSSSSQLST--------GPARSRPNSGQVG-----------KNITGSGTLSR----- 97
S+P+S+S+ +T GP + G G + G G L R
Sbjct: 288 SNPNSNSNSTTTVAVETVARGPEKDEDGLGLAGDGGAPPQRQPRRRRAGEGALRRGRGFS 347
Query: 98 KSTGSGPIALQPTGLITSGPVGSGPVGASRRSGQLEQSGSMGKAVYGSAVTSLGEE 153
S+ SG + S P P A+RRS S S + S+ +S GEE
Sbjct: 348 SSSSSGSDSDLSPARSPSAP--RAPAAAARRSASSSSSSSSSSSSSSSSSSSEGEE 401
>FIB1_PETMA (P02674) Fibrinogen alpha-1 chain precursor [Contains:
Fibrinopeptide A] (Fragment)
Length = 966
Score = 34.3 bits (77), Expect = 0.63
Identities = 29/88 (32%), Positives = 41/88 (45%), Gaps = 10/88 (11%)
Query: 61 KSHPSSSSSQ---LSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGP 117
++ P++ S+Q STG R+ PN+G G+G + +TGSG TG T
Sbjct: 657 RTEPNTGSAQGGSWSTG-GRTEPNTGSGQGGSWGTGGRTEPNTGSGQGGSWSTGGRTEPN 715
Query: 118 VGSGPVGASRRSGQLE------QSGSMG 139
GSG G+ G+ E Q GS G
Sbjct: 716 TGSGQGGSWGTGGRTEPNTGSAQGGSWG 743
Score = 32.7 bits (73), Expect = 1.8
Identities = 27/81 (33%), Positives = 35/81 (42%), Gaps = 7/81 (8%)
Query: 65 SSSSSQLSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGSGPVG 124
S+ STG R+ PN+G G+G + +TGSG TG T GSG G
Sbjct: 412 SAQGGSWSTG-GRTEPNTGSGQGGSWGTGGRTEPNTGSGQGGSWGTGGRTEPNTGSGQGG 470
Query: 125 ASRRSGQLE------QSGSMG 139
+ G+ E Q GS G
Sbjct: 471 SWGTGGRTEPNTGSAQGGSWG 491
Score = 32.0 bits (71), Expect = 3.1
Identities = 24/83 (28%), Positives = 38/83 (44%), Gaps = 4/83 (4%)
Query: 61 KSHPSSSSSQ---LSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGP 117
++ P++ S+Q TG R+ PN+G +G + +TGSG TG T
Sbjct: 639 RTEPNTGSAQGGSWGTG-GRTEPNTGSAQGGSWSTGGRTEPNTGSGQGGSWGTGGRTEPN 697
Query: 118 VGSGPVGASRRSGQLEQSGSMGK 140
GSG G+ G+ E + G+
Sbjct: 698 TGSGQGGSWSTGGRTEPNTGSGQ 720
Score = 30.8 bits (68), Expect = 7.0
Identities = 27/88 (30%), Positives = 39/88 (43%), Gaps = 10/88 (11%)
Query: 61 KSHPSSSSSQ---LSTGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGP 117
++ P++ S+Q STG R+ PN+G G+G + +TGS TG T
Sbjct: 513 RTEPNTGSAQGGSWSTG-GRTEPNTGSAKGGSWGTGGRTEPNTGSAKGGSWSTGGRTEPN 571
Query: 118 VGSGPVGASRRSGQLE------QSGSMG 139
GS G+ G+ E Q GS G
Sbjct: 572 TGSAKGGSWGTGGRTEPNTGSAQGGSWG 599
>CA13_BOVIN (P04258) Collagen alpha 1(III) chain
Length = 1049
Score = 34.3 bits (77), Expect = 0.63
Identities = 40/131 (30%), Positives = 45/131 (33%), Gaps = 13/131 (9%)
Query: 11 SSGLYVSGRPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQ 70
SSG V G P + R P P G P GE G + P+ P Q
Sbjct: 592 SSG--VDGAPGKDGPRGPT--GPIGPPGPAGQPGDKGESGAPGVPGIAGPRGGPGERGEQ 647
Query: 71 LSTGPARSRPNSGQVGK-NITGS-GTLSRKSTGSGPIALQPTGLITSGPVGSGPVGASRR 128
GPA GQ G+ G G K G P A P G GSGP G
Sbjct: 648 GPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPPGAAGPAG-------GSGPAGPPGP 700
Query: 129 SGQLEQSGSMG 139
G + GS G
Sbjct: 701 QGVKGERGSPG 711
>VATA_PYRAE (Q8ZYR1) V-type ATP synthase alpha chain (EC 3.6.3.14)
(V-type ATPase subunit A)
Length = 593
Score = 33.9 bits (76), Expect = 0.82
Identities = 25/77 (32%), Positives = 34/77 (43%), Gaps = 6/77 (7%)
Query: 339 ELSPNFLGWLADRKLSTDDRIMRLKEGHIKEGSTVSVM---GVVRRHENVLMIVPPTEPV 395
E +P + W+AD K DD I R+K K G M VRR +PP EP+
Sbjct: 157 EHAPGVVEWIADGKYKVDDVIARVK---TKRGVVEVKMWHKWPVRRPRPFKEKLPPVEPL 213
Query: 396 STGCQWMRCLLPTGVEG 412
TG + + + P G
Sbjct: 214 ITGVRTVDTMFPIAKGG 230
>CA11_HUMAN (P02452) Collagen alpha 1(I) chain precursor
Length = 1464
Score = 33.9 bits (76), Expect = 0.82
Identities = 43/149 (28%), Positives = 55/149 (36%), Gaps = 44/149 (29%)
Query: 17 SGRPEQPKERQPP-TMASRSVPYTGGDPKKSGELG------KMLDIPVLDPKSHPSS--- 66
+G+P +P ER PP +R +P T G P G G D PK P S
Sbjct: 235 AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGE 294
Query: 67 --SSSQL-------------STGPARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTG 111
+ Q+ + GPA +R N G G +GP PTG
Sbjct: 295 NGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATG--------------AAGPPG--PTG 338
Query: 112 LITSGPVG-SGPVGASRRSGQLEQSGSMG 139
+GP G G VGA +G GS G
Sbjct: 339 --PAGPPGFPGAVGAKGEAGPQGPRGSEG 365
Score = 31.2 bits (69), Expect = 5.3
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 10/126 (7%)
Query: 16 VSGRPEQPKERQPPTMASRSVPYTGGDPKKSGELGKMLDIPVLDPKSHPSSSSSQLSTGP 75
V G P Q ER P +P G+P K G G + P P + +G
Sbjct: 960 VVGLPGQRGERGFP-----GLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGR 1014
Query: 76 ARSRPNSGQVGKNITGSGTLSRKSTGSGPIALQPTGLITSGPVGSGPVGASRRSGQLEQS 135
+ G G++ + R TG P G P GPVG + +SG ++
Sbjct: 1015 EGAPGAEGSPGRDGSPGAKGDRGETGPAG----PPGA-PGAPGAPGPVGPAGKSGDRGET 1069
Query: 136 GSMGKA 141
G G A
Sbjct: 1070 GPAGPA 1075
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,089,720
Number of Sequences: 164201
Number of extensions: 2380058
Number of successful extensions: 7717
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 7529
Number of HSP's gapped (non-prelim): 223
length of query: 428
length of database: 59,974,054
effective HSP length: 113
effective length of query: 315
effective length of database: 41,419,341
effective search space: 13047092415
effective search space used: 13047092415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Medicago: description of AC122163.2