BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC122162.9 - phase: 0
(380 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSPJ_VIBCH (P45776) General secretion pathway protein J precurso... 32 2.7
YDHK_SALTY (Q8ZPN4) Hypothetical protein ydhK 31 4.6
SYD_MYCPN (P75068) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar... 30 7.8
GYRA_MYCLE (Q57532) DNA gyrase subunit A (EC 5.99.1.3) [Contains... 30 7.8
GUAA_SYNPX (Q7UA53) GMP synthase [glutamine-hydrolyzing] (EC 6.3... 30 7.8
>GSPJ_VIBCH (P45776) General secretion pathway protein J precursor
(Cholera toxin secretion protein epsJ)
Length = 221
Score = 32.0 bits (71), Expect = 2.7
Identities = 20/73 (27%), Positives = 38/73 (51%), Gaps = 10/73 (13%)
Query: 246 DSPGGNKMLVESEGRLLLLGIEESSNYFSIDFFELDEKKKKWVRLMDFDEKEKKWVKLRN 305
D+P G + L+ LL G+E+ +++ F+ E K+WV E K ++L++
Sbjct: 144 DTPAGQQGLISP----LLTGVED----WAVQFYLQGEWSKEWVPTNALPEAVKVTLRLKD 195
Query: 306 FG--DRVFFIGRG 316
+G +R++ G G
Sbjct: 196 YGEIERIYLTGGG 208
>YDHK_SALTY (Q8ZPN4) Hypothetical protein ydhK
Length = 679
Score = 31.2 bits (69), Expect = 4.6
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 65 YNDNEISSSSNHHPSQLEEKQTLIPRRPWLIRF 97
+N++E S + HH SQL Q + RR WL+R+
Sbjct: 541 HNESEFESLTYHHVSQLSNSQDALARR-WLLRW 572
>SYD_MYCPN (P75068) Aspartyl-tRNA synthetase (EC 6.1.1.12)
(Aspartate--tRNA ligase) (AspRS)
Length = 557
Score = 30.4 bits (67), Expect = 7.8
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 203 KMSSLYGDTCVFKGQLYAVHQSGQTVTIGPDSSVELAAQPLGHDSP-GGNKMLVESEGRL 261
++ +LY D FK +G ++ D + L QPL D P G +LV + +
Sbjct: 318 QLPNLYLDEVSFKALRKLAKDNGVSLEFYSDKASSLK-QPL--DLPLAGTILLVAHKSKT 374
Query: 262 ---LLLGIEESSNYFSIDFFELDEKKKKWV---RLMDFDEKEKKWVKLRN 305
LG + + ++ + ++ W+ L +FDEKE+KWV N
Sbjct: 375 QAWTALGAIRNELKYHLNLVKPNQYSFCWIVDFPLYEFDEKEQKWVSAHN 424
>GYRA_MYCLE (Q57532) DNA gyrase subunit A (EC 5.99.1.3) [Contains: Mle
gyrA intein]
Length = 1273
Score = 30.4 bits (67), Expect = 7.8
Identities = 17/64 (26%), Positives = 29/64 (44%), Gaps = 3/64 (4%)
Query: 212 CVFKGQLYAVHQSGQTVTIGPDSSVELAAQPLGHDSPGGNKMLVESEGRLLLLGIEESSN 271
C G L V +GQ++ S+ + A +P+G + G M ++ RLL L +
Sbjct: 1086 CAADGDLLLVSANGQSIRF---SATDEALRPMGRATSGVQGMRFNADDRLLSLNVVREDT 1142
Query: 272 YFSI 275
Y +
Sbjct: 1143 YLLV 1146
>GUAA_SYNPX (Q7UA53) GMP synthase [glutamine-hydrolyzing] (EC
6.3.5.2) (Glutamine amidotransferase) (GMP synthetase)
Length = 528
Score = 30.4 bits (67), Expect = 7.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 4 ADWSQLPKDLLTLISQRIDTEI 25
ADWS+LP DL+ IS RI E+
Sbjct: 486 ADWSRLPYDLMETISNRIVNEV 507
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,505,356
Number of Sequences: 164201
Number of extensions: 2150339
Number of successful extensions: 5130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5127
Number of HSP's gapped (non-prelim): 6
length of query: 380
length of database: 59,974,054
effective HSP length: 112
effective length of query: 268
effective length of database: 41,583,542
effective search space: 11144389256
effective search space used: 11144389256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC122162.9