BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122162.7 - phase: 0 
         (377 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YO62_CAEEL (P34601) Hypothetical protein ZK1098.2 in chromosome III    33  0.91
PFTA_SCHPO (O60052) Protein farnesyltransferase/geranylgeranyltr...    31  4.5
RR4_TAKLE (P59150) Chloroplast 30S ribosomal protein S4                30  7.7

>YO62_CAEEL (P34601) Hypothetical protein ZK1098.2 in chromosome III
          Length = 626

 Score = 33.5 bits (75), Expect = 0.91
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 10  ELLQLISQKLDTVLCLLRFRSVCSTWRSSSIPNHKHKNSSPLNIPQFPEPNFDPFNIRNI 69
           E+L    QK+D V C   F    S      + NHK++   PLN P   +P  DP  + N+
Sbjct: 63  EILNENGQKIDLVQCKNCF-GFLSARTGGHMKNHKNQRCKPLNGPPEKKPKLDPQVVGNL 121


>PFTA_SCHPO (O60052) Protein
           farnesyltransferase/geranylgeranyltransferase type I
           alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX
           farnesyltransferase alpha subunit) (Ras proteins
           prenyltransferase alpha) (FTase-alpha) (Type I protein
           geranyl-geranyltransf
          Length = 294

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 13/42 (30%), Positives = 21/42 (49%)

Query: 99  WLIRIGPDFKGKTQLWHPFSSGQNLSSDFNNVLDFNKLSFRV 140
           WL  I  DF+   Q+WH      +L+ ++   L+F K  F +
Sbjct: 99  WLDEIAEDFQKNYQVWHHRQKILSLTKNYERELEFTKKMFEI 140


>RR4_TAKLE (P59150) Chloroplast 30S ribosomal protein S4
          Length = 202

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 22/82 (26%), Positives = 37/82 (44%), Gaps = 1/82 (1%)

Query: 11  LLQLISQKLDTVLCLLRFRSVCSTWRSSSIPNHKHKNSSPLNIPQFPEPNFDPFNIRNII 70
           LLQL+  +LD  +  L         R      H   N++ ++IP +     D   IRN +
Sbjct: 84  LLQLLEMRLDNTIFRLGMAPTIPGARQLVNHGHISMNNNIIDIPSYNREPGDIITIRNKL 143

Query: 71  KSKYITSRLITHTIFLIKPPQH 92
           +S+ + S+ I +    +K P H
Sbjct: 144 ESRSMISKNI-NLFQKLKMPSH 164


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.324    0.140    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,832,293
Number of Sequences: 164201
Number of extensions: 2198651
Number of successful extensions: 3946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3945
Number of HSP's gapped (non-prelim): 3
length of query: 377
length of database: 59,974,054
effective HSP length: 112
effective length of query: 265
effective length of database: 41,583,542
effective search space: 11019638630
effective search space used: 11019638630
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (30.4 bits)