BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC122162.11 - phase: 0 
         (208 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Y405_ARCFU (O29842) Hypothetical protein AF0405                        31  1.8
YG98_HAEIN (O05083) Putative glycosyl transferase HI1698 (EC 2.-...    30  4.0
VF03_VACCV (P24357) Protein F3                                         30  5.2
VF03_VACCC (P21013) Protein F3                                         30  5.2
YRAP_HAEIN (P45301) Hypothetical protein HI1658 precursor              29  6.8
PYR1_SQUAC (Q91437) CAD protein [Includes: Glutamine-dependent c...    29  6.8
SPAO_SALTY (P40699) Surface presentation of antigens protein spaO      29  8.9

>Y405_ARCFU (O29842) Hypothetical protein AF0405
          Length = 83

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 83  NKMLVESEGRLLLLAINEMFYSFSIDFFKLDEKEKKWVRLMDFDEKEK 130
           N ++V  EG+LLLL  NE    F +D  +  E+E+++    +F+E+E+
Sbjct: 32  NSIMVYQEGKLLLLDTNE---EFDLDELESVEEEEEFEDYDEFEEEEE 76


>YG98_HAEIN (O05083) Putative glycosyl transferase HI1698 (EC
           2.-.-.-)
          Length = 353

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 50  IYAVNQSGETVTVGPDSSVELAAQPLDPGIPGL--NKMLVESEGRLLLLAINEMFYSFSI 107
           I  +  +G T  V  + +  LA Q  D     +  NK   + + ++ + A+N++ YS   
Sbjct: 8   IMNIGSAGGTERVSINVANALAKQGYDVSFISIGGNKPFFQVDEKINIYAMNKLPYSLKK 67

Query: 108 DFFKLDEKEKKWVRLMDFD 126
           D+F + +K ++ V+ +  D
Sbjct: 68  DYFSITKKLRELVKELQLD 86


>VF03_VACCV (P24357) Protein F3
          Length = 480

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 18/70 (25%), Positives = 29/70 (40%), Gaps = 7/70 (10%)

Query: 138 FGDRIFFIGRGCSFSASASDLCIPKGNCVVFIDETVLWIDNKRVFHLDQNQLSCGAKYLN 197
           FG R+F +GR   F   +S       N    ID+ +   DN  +  +D   L  G  Y  
Sbjct: 406 FGRRLFLVGRNAEFYCESS-------NTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRE 458

Query: 198 LFLPPKWIHN 207
            ++    ++N
Sbjct: 459 SYIDTIEVYN 468


>VF03_VACCC (P21013) Protein F3
          Length = 480

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 18/70 (25%), Positives = 29/70 (40%), Gaps = 7/70 (10%)

Query: 138 FGDRIFFIGRGCSFSASASDLCIPKGNCVVFIDETVLWIDNKRVFHLDQNQLSCGAKYLN 197
           FG R+F +GR   F   +S       N    ID+ +   DN  +  +D   L  G  Y  
Sbjct: 406 FGRRLFLVGRNAEFYCESS-------NTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRG 458

Query: 198 LFLPPKWIHN 207
            ++    ++N
Sbjct: 459 SYIDTIEVYN 468


>YRAP_HAEIN (P45301) Hypothetical protein HI1658 precursor
          Length = 193

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 47  KGRIYAVNQSGETVTVG--PDSSVELAAQPLDPGIPGLNKMLVE 88
           +GR+ AV+ +G  + +G  P+S V+  A  L  G+ G+N++  E
Sbjct: 69  EGRVNAVSYNGRVLLIGQVPNSDVKDTATALAKGVEGVNEVYNE 112


>PYR1_SQUAC (Q91437) CAD protein [Includes: Glutamine-dependent
            carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate
            carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC
            3.5.2.3)]
          Length = 2242

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 22/75 (29%), Positives = 33/75 (43%), Gaps = 9/75 (12%)

Query: 64   PDSSVELAAQPLDPGIPGLNKML-----VESEGRLLLLAINEMFYSFSIDFFKLDEKEKK 118
            P S  E  +    PG PGL  ML       SEGRL +  + +  Y      F L  +E  
Sbjct: 1696 PHSVEEKNSDSPPPGYPGLETMLPLLLTAVSEGRLTIDDLVKRLYENPRKIFSLPVQENT 1755

Query: 119  WVRLMDFDEKEKKWV 133
            +V +    + E++W+
Sbjct: 1756 YVEV----DLEQEWI 1766


>SPAO_SALTY (P40699) Surface presentation of antigens protein spaO
          Length = 303

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 20/78 (25%), Positives = 33/78 (41%), Gaps = 14/78 (17%)

Query: 115 KEKKWVRLMDFDEKEKKWVKLRHFGDRIFFIGRGCSFSASASDLCIPKGNCVVFIDETVL 174
           ++  WVRL D +++   W+K   + + +     G + SA A  L +P             
Sbjct: 36  RQGMWVRLSDAEKRWSAWIKPGDWLEHVSPALAGAAVSAGAEHLVVP------------- 82

Query: 175 WI-DNKRVFHLDQNQLSC 191
           W+   +R F L    LSC
Sbjct: 83  WLAATERPFELPVPHLSC 100


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.144    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,381,332
Number of Sequences: 164201
Number of extensions: 1091906
Number of successful extensions: 3421
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3419
Number of HSP's gapped (non-prelim): 9
length of query: 208
length of database: 59,974,054
effective HSP length: 105
effective length of query: 103
effective length of database: 42,732,949
effective search space: 4401493747
effective search space used: 4401493747
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)