BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC121245.5 + phase: 0
(72 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABG1_MOUSE (Q64343) ATP-binding cassette, sub-family G, member 1... 51 5e-07
ABG1_HUMAN (P45844) ATP-binding cassette, sub-family G, member 1... 51 5e-07
SCRT_DROME (P45843) Scarlet protein 50 1e-06
ADP1_YEAST (P25371) Probable ATP-dependent permease precursor 50 1e-06
SNQ2_YEAST (P32568) SNQ2 protein 49 2e-06
PDRF_YEAST (Q04182) ATP-dependent permease PDR15 49 3e-06
PDRA_YEAST (P51533) ATP-dependent permease PDR10 49 3e-06
WHIT_ANOGA (Q27256) White protein 47 9e-06
YN99_YEAST (P53756) Probable ATP-dependent transporter YNR070W 47 1e-05
YQ5C_CAEEL (Q09466) Putative ABC transporter C16C10.12 in chromo... 46 2e-05
YOH5_YEAST (Q08234) Probable ATP-dependent transporter YOL074C/Y... 45 3e-05
WHIT_ANOAL (Q16928) White protein 45 3e-05
YD84_MYCBO (P63394) Hypothetical ABC transporter ATP-binding pro... 45 3e-05
YD49_MYCTU (P63393) Hypothetical ABC transporter ATP-binding pro... 45 3e-05
CDR4_CANAL (O74676) ABC transporter CDR4 45 4e-05
PDR5_YEAST (P33302) Suppressor of toxicity of sporidesmin 44 6e-05
WHIT_DROME (P10090) White protein 44 8e-05
SUFC_ECOLI (P77499) Probable ATP-dependent transporter sufC 44 8e-05
CGR1_CANGA (O74208) ATP-binding cassette transporter CGR1 (Pleom... 44 8e-05
YPC3_CAEEL (Q11180) Putative ABC transporter C05D10.3 in chromos... 44 1e-04
>ABG1_MOUSE (Q64343) ATP-binding cassette, sub-family G, member 1
(White protein homolog) (ATP-binding cassette
transporter 8)
Length = 666
Score = 51.2 bits (121), Expect = 5e-07
Identities = 23/40 (57%), Positives = 32/40 (79%)
Query: 28 KNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
K G K++L+G++G G+L+AIMGPSG GKSTL++ LAG
Sbjct: 94 KKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG 133
>ABG1_HUMAN (P45844) ATP-binding cassette, sub-family G, member 1
(White protein homolog) (ATP-binding cassette
transporter 8)
Length = 678
Score = 51.2 bits (121), Expect = 5e-07
Identities = 23/40 (57%), Positives = 32/40 (79%)
Query: 28 KNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
K G K++L+G++G G+L+AIMGPSG GKSTL++ LAG
Sbjct: 94 KKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG 133
>SCRT_DROME (P45843) Scarlet protein
Length = 666
Score = 49.7 bits (117), Expect = 1e-06
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 11 GTCLTWKDIWVNTISNGKNGS-KSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
G L W+D+ V T G K I+ TG +PG L+A+MG SG GK+TL+ TLA
Sbjct: 66 GATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLA 122
>ADP1_YEAST (P25371) Probable ATP-dependent permease precursor
Length = 1049
Score = 49.7 bits (117), Expect = 1e-06
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 4 EKEDEVDGTCLTWKDIWVNTISNGKNG-SKSILQGLTGYAKPGQLLAIMGPSGCGKSTLL 62
+ ED+ T L++++I + S +G +++L ++G KPGQ+LAIMG SG GK+TLL
Sbjct: 375 QNEDDTLAT-LSFENITYSVPSINSDGVEETVLNEISGIVKPGQILAIMGGSGAGKTTLL 433
Query: 63 DTLAGTNK 70
D LA K
Sbjct: 434 DILAMKRK 441
>SNQ2_YEAST (P32568) SNQ2 protein
Length = 1501
Score = 48.9 bits (115), Expect = 2e-06
Identities = 24/54 (44%), Positives = 33/54 (60%), Gaps = 2/54 (3%)
Query: 16 WKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGTN 69
WKD+ G G + +L ++GY PG + A+MG SG GK+TLL+TLA N
Sbjct: 855 WKDVCFTIPYEG--GKRMLLDNVSGYCIPGTMTALMGESGAGKTTLLNTLAQRN 906
>PDRF_YEAST (Q04182) ATP-dependent permease PDR15
Length = 1529
Score = 48.5 bits (114), Expect = 3e-06
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 16 WKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
W+D+ + G G + IL + G+ KPG L A+MG SG GK+TLLD LA
Sbjct: 886 WRDLCYDVPIKG--GQRRILNNVDGWVKPGTLTALMGASGAGKTTLLDCLA 934
Score = 30.8 bits (68), Expect = 0.67
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGTN 69
IL+ + G PG+LL ++G G G +TLL +++ +
Sbjct: 185 ILKPMDGCLNPGELLVVLGRPGSGCTTLLKSISSNS 220
>PDRA_YEAST (P51533) ATP-dependent permease PDR10
Length = 1564
Score = 48.5 bits (114), Expect = 3e-06
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 28 KNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
KNG + IL + G+ KPG L A++G SG GK+TLLD LA
Sbjct: 935 KNGKRRILDNVDGWVKPGTLTALIGASGAGKTTLLDCLA 973
Score = 31.2 bits (69), Expect = 0.51
Identities = 14/42 (33%), Positives = 24/42 (56%)
Query: 25 SNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
S + IL+ + G PG+LL ++G G G +TLL +++
Sbjct: 186 SEDNDSGFQILKPMDGCINPGELLVVLGRPGAGCTTLLKSIS 227
>WHIT_ANOGA (Q27256) White protein
Length = 695
Score = 47.0 bits (110), Expect = 9e-06
Identities = 22/38 (57%), Positives = 29/38 (75%)
Query: 29 NGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
N K +L+ +TG AK G+LLA+MG SG GK+TLL+ LA
Sbjct: 110 NPRKHLLKNVTGVAKSGELLAVMGSSGAGKTTLLNALA 147
>YN99_YEAST (P53756) Probable ATP-dependent transporter YNR070W
Length = 1333
Score = 46.6 bits (109), Expect = 1e-05
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 4/54 (7%)
Query: 19 IWVN---TISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGTN 69
IW N TI + +G + +L ++GY PG L A++G SG GK+TLL+TLA N
Sbjct: 730 IWKNVSFTIPHS-SGQRKLLDSVSGYCVPGTLTALIGESGAGKTTLLNTLAQRN 782
Score = 33.1 bits (74), Expect = 0.13
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 10 DGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
D CL W I +N K IL+ ++ AK G+++ ++G G G ++ L + AG
Sbjct: 21 DILCLPWTIIKGIRERKNRNKMKIILKNVSLLAKSGEMVLVLGRPGAGCTSFLKSAAG 78
>YQ5C_CAEEL (Q09466) Putative ABC transporter C16C10.12 in
chromosome III
Length = 610
Score = 45.8 bits (107), Expect = 2e-05
Identities = 23/57 (40%), Positives = 36/57 (62%), Gaps = 1/57 (1%)
Query: 14 LTWKDIWVNTISN-GKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGTN 69
+TW++I V T K +L ++G AKPG+++A+MG SG GK+TL++ L N
Sbjct: 35 VTWENIEVKTRKKLFSKKQKQLLNRVSGIAKPGEMVALMGASGAGKTTLMNVLMCRN 91
>YOH5_YEAST (Q08234) Probable ATP-dependent transporter
YOL074C/YOL075C
Length = 1294
Score = 45.4 bits (106), Expect = 3e-05
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 25 SNGKNGS-----KSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGTNK 70
SN K G+ K ILQ + KPG + AIMGPSG GKS+LL+ ++G K
Sbjct: 695 SNWKEGNFHHETKEILQSVNAIFKPGMINAIMGPSGSGKSSLLNLISGRLK 745
Score = 30.8 bits (68), Expect = 0.67
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 45 GQLLAIMGPSGCGKSTLLDTLA 66
G ++A+MG SG GK+TLL+ LA
Sbjct: 55 GSVMAVMGGSGSGKTTLLNVLA 76
>WHIT_ANOAL (Q16928) White protein
Length = 709
Score = 45.4 bits (106), Expect = 3e-05
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 29 NGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
N K +L+ +TG A+ G+LLA+MG SG GK+TLL+ LA
Sbjct: 113 NPRKHLLKNVTGVARSGELLAVMGSSGAGKTTLLNELA 150
>YD84_MYCBO (P63394) Hypothetical ABC transporter ATP-binding
protein Mb1384
Length = 579
Score = 45.1 bits (105), Expect = 3e-05
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 15 TWKD------IWVNTISNGKNG-SKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
TW+D I + ++ G +G S +L G++ +PG AI+GPSGCGKST+L +AG
Sbjct: 322 TWRDGAVVPRIEFDDVAFGYDGGSGPVLDGVSFCLQPGTTTAIVGPSGCGKSTILALIAG 381
Query: 68 TNK 70
++
Sbjct: 382 LHQ 384
>YD49_MYCTU (P63393) Hypothetical ABC transporter ATP-binding
protein Rv1349/MT1392
Length = 579
Score = 45.1 bits (105), Expect = 3e-05
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 15 TWKD------IWVNTISNGKNG-SKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
TW+D I + ++ G +G S +L G++ +PG AI+GPSGCGKST+L +AG
Sbjct: 322 TWRDGAVVPRIEFDDVAFGYDGGSGPVLDGVSFCLQPGTTTAIVGPSGCGKSTILALIAG 381
Query: 68 TNK 70
++
Sbjct: 382 LHQ 384
>CDR4_CANAL (O74676) ABC transporter CDR4
Length = 1490
Score = 44.7 bits (104), Expect = 4e-05
Identities = 23/64 (35%), Positives = 38/64 (58%), Gaps = 2/64 (3%)
Query: 3 REKEDEVDGTCLTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLL 62
++K + G W+D+ K+ + IL ++G+ KPGQ+ A+MG SG GK+TLL
Sbjct: 835 QDKMLQSGGDTFFWRDLTYQV--KIKSEDRVILDHVSGWVKPGQVTALMGASGAGKTTLL 892
Query: 63 DTLA 66
+ L+
Sbjct: 893 NALS 896
Score = 33.5 bits (75), Expect = 0.10
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
IL+ + G KPG+L ++G G G ST L T+A
Sbjct: 172 ILKPMDGLIKPGELTVVLGRPGAGCSTFLKTIA 204
>PDR5_YEAST (P33302) Suppressor of toxicity of sporidesmin
Length = 1511
Score = 44.3 bits (103), Expect = 6e-05
Identities = 21/39 (53%), Positives = 27/39 (68%)
Query: 28 KNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
K ++ IL + G+ KPG L A+MG SG GK+TLLD LA
Sbjct: 881 KAETRRILNNVDGWVKPGTLTALMGASGAGKTTLLDCLA 919
Score = 30.4 bits (67), Expect = 0.87
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 34 ILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
IL+ + G PG+LL ++G G G +TLL +++
Sbjct: 175 ILKPMDGCLNPGELLVVLGRPGSGCTTLLKSIS 207
>WHIT_DROME (P10090) White protein
Length = 687
Score = 43.9 bits (102), Expect = 8e-05
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 32 KSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
K +L+ + G A PG+LLA+MG SG GK+TLL+ LA
Sbjct: 110 KHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALA 144
>SUFC_ECOLI (P77499) Probable ATP-dependent transporter sufC
Length = 248
Score = 43.9 bits (102), Expect = 8e-05
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 32 KSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAG 67
K+IL+GL+ PG++ AIMGP+G GKSTL TLAG
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 49
>CGR1_CANGA (O74208) ATP-binding cassette transporter CGR1
(Pleomorphic drug resistance homolog)
Length = 1542
Score = 43.9 bits (102), Expect = 8e-05
Identities = 21/39 (53%), Positives = 26/39 (65%)
Query: 28 KNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLA 66
K + IL + G+ KPG L A+MG SG GK+TLLD LA
Sbjct: 897 KTEVRRILNNVDGWVKPGTLTALMGASGAGKTTLLDCLA 935
Score = 35.0 bits (79), Expect = 0.035
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 19 IWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGT 68
+W ++ + IL+ + G KPG+LL ++G G G +TLL +++ T
Sbjct: 159 VWRKARPARESDTFRILKPMDGLLKPGELLVVLGRPGSGCTTLLKSISST 208
>YPC3_CAEEL (Q11180) Putative ABC transporter C05D10.3 in
chromosome III
Length = 598
Score = 43.5 bits (101), Expect = 1e-04
Identities = 21/45 (46%), Positives = 29/45 (63%)
Query: 28 KNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGTNKLN 72
K K IL ++G A+ G+LLAI+G SG GK+TL++ L N N
Sbjct: 3 KRRVKEILHNVSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTN 47
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.311 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,709,202
Number of Sequences: 164201
Number of extensions: 322038
Number of successful extensions: 3769
Number of sequences better than 10.0: 999
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 2716
Number of HSP's gapped (non-prelim): 1137
length of query: 72
length of database: 59,974,054
effective HSP length: 48
effective length of query: 24
effective length of database: 52,092,406
effective search space: 1250217744
effective search space used: 1250217744
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC121245.5