BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC121245.1 - phase: 0 /pseudo
         (660 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

JIP_CAEEL (P34609) JNK-interacting protein (JIP) (JNK MAP kinase...    32  5.3
RBMT_HUMAN (Q9NW13) RNA-binding protein 28 (RNA binding motif pr...    31  9.1
MOAA_METMA (Q8PX29) Probable molybdenum cofactor biosynthesis pr...    31  9.1
GLC8_YEAST (P41818) GLC8 protein                                       31  9.1
DAT1_MOUSE (Q8C9B9) Death associated transcription factor 1 (Dea...    31  9.1

>JIP_CAEEL (P34609) JNK-interacting protein (JIP) (JNK MAP kinase
           scaffold protein) (Uncoordinated protein 16)
          Length = 1157

 Score = 32.0 bits (71), Expect = 5.3
 Identities = 21/93 (22%), Positives = 43/93 (45%), Gaps = 3/93 (3%)

Query: 151 ITQATSKQMSKRDSLRPYMNIIDKMLVQMLNEDPSFKPQGGRLGESDMDYDTDEKSMASL 210
           + +  S+ M  RD       + +KM  Q+   +   K    +L E + + + D+  MA  
Sbjct: 364 VDELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEEDDVPMAMR 423

Query: 211 RRRLRRAREQYYRYRSEYTKFVLEALELEDTVK 243
           +R  R   ++    R+ Y +   + +ELE+++K
Sbjct: 424 KRFTRSEMQRVLMDRNAYKE---KLMELEESIK 453


>RBMT_HUMAN (Q9NW13) RNA-binding protein 28 (RNA binding motif
           protein 28)
          Length = 758

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 22/79 (27%), Positives = 35/79 (43%), Gaps = 2/79 (2%)

Query: 65  ALFGLILLITLNKFWSGSVRGFAMACSNTFGLVTGAFLLGFGMSEIPKGIWLNADWAIQQ 124
           A FG +L + + +   G +RGF         L  G  L G  M EI KG  +  DWA+ +
Sbjct: 134 AQFGAVLEVNIPRKPDGKMRGFGFVQFKNL-LEAGKALKGMNMKEI-KGRTVAVDWAVAK 191

Query: 125 KFLSHKVAKMAVKLDDAHQ 143
                  +  A+  + +H+
Sbjct: 192 DKYKDTQSVSAIGEEKSHE 210


>MOAA_METMA (Q8PX29) Probable molybdenum cofactor biosynthesis
           protein A
          Length = 334

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 21/77 (27%), Positives = 37/77 (47%), Gaps = 13/77 (16%)

Query: 163 DSLRPYMNIIDKMLVQMLNEDPSFKPQGGRLGESDMDYDTDEKSMASLRRRLRRAREQYY 222
           D +RPY   +   L++++N DP        L +  +D  T EKS+        RA E   
Sbjct: 195 DFIRPYKGKVILQLIELMNIDP-------ELSKYTIDSKTLEKSLE------ERASEVRV 241

Query: 223 RYRSEYTKFVLEALELE 239
           R+     K++++ +E+E
Sbjct: 242 RHLHHRKKYMIDGVEVE 258


>GLC8_YEAST (P41818) GLC8 protein
          Length = 229

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 23/87 (26%), Positives = 41/87 (46%), Gaps = 12/87 (13%)

Query: 173 DKMLVQMLNED--------PSFKPQGGRLGESDMDYDTDEKSMASLRRRLRRAREQYYRY 224
           DK   Q+ N+D        P F+ +  +  + + + + DE S  +  ++    R+++Y  
Sbjct: 143 DKKPCQVANDDIDDLSLGEPEFEIKENKQPDFETNDENDEDSPEARHKKFEEMRKKHYDV 202

Query: 225 RSEYTKFVLEALELEDTVKNYDRRDST 251
           R+ + K   EAL+ ED     D  DST
Sbjct: 203 RAIFNKKSREALKDEDE----DEDDST 225


>DAT1_MOUSE (Q8C9B9) Death associated transcription factor 1 (Death
           inducer-obliterator-1) (DIO-1)
          Length = 614

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 16/36 (44%), Positives = 21/36 (57%)

Query: 185 SFKPQGGRLGESDMDYDTDEKSMASLRRRLRRAREQ 220
           S K +GG   E   D D+D  ++  L+ RLRR REQ
Sbjct: 136 SEKAKGGEEEEDTSDSDSDGLTLKELQNRLRRKREQ 171


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.348    0.152    0.521 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,928,679
Number of Sequences: 164201
Number of extensions: 2642512
Number of successful extensions: 11612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11611
Number of HSP's gapped (non-prelim): 5
length of query: 660
length of database: 59,974,054
effective HSP length: 117
effective length of query: 543
effective length of database: 40,762,537
effective search space: 22134057591
effective search space used: 22134057591
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 69 (31.2 bits)